HHSEARCH alignment of GI: 254780237 and SCOP domain: d1doqa_

Alignment

Probab=99.79  E-value=5.3e-20  Score=146.80  Aligned_cols=67  Identities=31%  Similarity=0.372  Sum_probs=64.2

Q ss_pred             HHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             1233311122101105888989883983718887449888861889886449999999998083126
Q gi|254780237|r  252 FNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLG  318 (340)
Q Consensus       252 ~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg  318 (340)
                      .++.|.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++||+|.
T Consensus         2 ~~~~L~~~I~~L~LS~R~~N~L~~~gI~tv~dL~~~s~~dLl~i~n~G~ksl~EI~~~L~~~gl~l~   68 (69)
T d1doqa_           2 QEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLK   68 (69)
T ss_dssp             CCSSCCCCHHHHTCCHHHHHHHHHTTCCSHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHCCCSC
T ss_pred             CHHHHCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             2467579098718989999999895995399998788999974889878789999999998679678

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Thermus thermophilus [TaxId: 274]