HHSEARCH alignment of GI: 254780237 and SCOP domain: d1lb2b_

Alignment

Probab=99.91  E-value=7.7e-25  Score=178.14  Aligned_cols=72  Identities=57%  Similarity=1.017  Sum_probs=70.6

Q ss_pred             HHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             233311122101105888989883983718887449888861889886449999999998083126768789
Q gi|254780237|r  253 NPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDW  324 (340)
Q Consensus       253 ~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l~~~  324 (340)
                      ++.|.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++||+|||++++|
T Consensus         1 ~~~L~k~I~~L~lS~R~~N~L~~~gI~tvgdL~~~s~~dLl~~~n~G~KSl~EI~~~L~~~gL~lgm~~~~w   72 (72)
T d1lb2b_           1 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW   72 (72)
T ss_dssp             CCTTTSBGGGGCCCHHHHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHHHHTTCCSSCCCSCC
T ss_pred             CCHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             911208598717889999887482894799998678999976889758689999999998498778879998

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Escherichia coli [TaxId: 562]