HHSEARCH alignment of GI: 254780237 and SCOP domain: d1pzna1

Alignment

Probab=94.86  E-value=0.018  Score=33.30  Aligned_cols=54  Identities=11%  Similarity=0.172  Sum_probs=46.7

Q ss_pred             HHHC-CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2210-11058889898839837188874498888618898864499999999980
Q gi|254780237|r  260 VEEL-ELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTM  313 (340)
Q Consensus       260 IeeL-eLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~  313 (340)
                      ++++ ........-|..+++.++.+|...+.++|.+++++|++..+.|.+...++
T Consensus         3 L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~   57 (61)
T d1pzna1           3 IEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA   57 (61)
T ss_dssp             SSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             0217997999999999944999999985999999777999999999999999987

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]