Probab=99.95 E-value=1.3e-28 Score=202.50 Aligned_cols=93 Identities=42% Similarity=0.661 Sum_probs=88.9
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 67888158999961697566788899999874169830688999887144314664624449999984011417772798
Q gi|254780237|r 21 GQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDS 100 (340)
Q Consensus 21 ~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~~ 100 (340)
.+.+..|++|+++|++||||.|+||++||+|+|+++
T Consensus 14 ~~~~~~y~~~v~~p~erG~g~~~gn~l~~il~ss~~-------------------------------------------- 49 (106)
T d1smya1 14 RTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIP-------------------------------------------- 49 (106)
T ss_dssp EECSSSCEEEEEEEECTTHHHHHHHHHHHHHHHTCE--------------------------------------------
T ss_pred EECCCCEEEEEEECCCCCCCCCCCCCCCEEEHHCCC--------------------------------------------
T ss_conf 625885358985026788622256503023440188--------------------------------------------
Q ss_pred CEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCHHEE
Q ss_conf 27999999447169963351389859988880899977896499999974687632034444655754302124311114
Q gi|254780237|r 101 HKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180 (340)
Q Consensus 101 ~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~FsPV 180 (340)
||
T Consensus 50 ------------------------------------------------------------------------------PV 51 (106)
T d1smya1 50 ------------------------------------------------------------------------------PV 51 (106)
T ss_dssp ------------------------------------------------------------------------------CE
T ss_pred ------------------------------------------------------------------------------HH
T ss_conf ------------------------------------------------------------------------------44
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4223577641168877621899999938961777999999999999888762244
Q gi|254780237|r 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE 235 (340)
Q Consensus 181 ~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~~ 235 (340)
++|||.|+++|+|+++|||||+|||||||||+|++|+++||+||++||.+|++++
T Consensus 52 ~kV~y~Ve~~rvg~~~d~dkL~LeI~TnGsi~P~eAl~~Aa~il~~h~~~f~n~e 106 (106)
T d1smya1 52 RRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ 106 (106)
T ss_dssp EEEEEEEEECCCSSCSCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred HEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5788982010317654236899999958977999999999999999988542899
class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: RBP11-like subunits of RNA polymerase
family: RNA polymerase alpha subunit dimerisation domain
domain: RNA polymerase alpha
species: Thermus thermophilus [TaxId: 274]