Probab=99.95 E-value=1.3e-28 Score=202.50 Aligned_cols=93 Identities=42% Similarity=0.661 Sum_probs=88.9 Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC Q ss_conf 67888158999961697566788899999874169830688999887144314664624449999984011417772798 Q gi|254780237|r 21 GQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDS 100 (340) Q Consensus 21 ~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~~ 100 (340) .+.+..|++|+++|++||||.|+||++||+|+|+++ T Consensus 14 ~~~~~~y~~~v~~p~erG~g~~~gn~l~~il~ss~~-------------------------------------------- 49 (106) T d1smya1 14 RTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIP-------------------------------------------- 49 (106) T ss_dssp EECSSSCEEEEEEEECTTHHHHHHHHHHHHHHHTCE-------------------------------------------- T ss_pred EECCCCEEEEEEECCCCCCCCCCCCCCCEEEHHCCC-------------------------------------------- T ss_conf 625885358985026788622256503023440188-------------------------------------------- Q ss_pred CEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCHHEE Q ss_conf 27999999447169963351389859988880899977896499999974687632034444655754302124311114 Q gi|254780237|r 101 HKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180 (340) Q Consensus 101 ~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~FsPV 180 (340) || T Consensus 50 ------------------------------------------------------------------------------PV 51 (106) T d1smya1 50 ------------------------------------------------------------------------------PV 51 (106) T ss_dssp ------------------------------------------------------------------------------CE T ss_pred ------------------------------------------------------------------------------HH T ss_conf ------------------------------------------------------------------------------44 Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 4223577641168877621899999938961777999999999999888762244 Q gi|254780237|r 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE 235 (340) Q Consensus 181 ~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~~ 235 (340) ++|||.|+++|+|+++|||||+|||||||||+|++|+++||+||++||.+|++++ T Consensus 52 ~kV~y~Ve~~rvg~~~d~dkL~LeI~TnGsi~P~eAl~~Aa~il~~h~~~f~n~e 106 (106) T d1smya1 52 RRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ 106 (106) T ss_dssp EEEEEEEEECCCSSCSCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTSCSCC T ss_pred HEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 5788982010317654236899999958977999999999999999988542899
class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: RBP11-like subunits of RNA polymerase
family: RNA polymerase alpha subunit dimerisation domain
domain: RNA polymerase alpha
species: Thermus thermophilus [TaxId: 274]