HHSEARCH alignment of GI: 254780237 and SCOP domain: d1twfc1

Alignment
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.96  E-value=1.6e-05  Score=53.01  Aligned_cols=120  Identities=15%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf             36788815899996169756678889999987416983068899988714431466462444999998401141777279
Q gi|254780237|r   20 LGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGD   99 (340)
Q Consensus        20 ~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~   99 (340)
                      +-+.+++.-+|.+.    |--..++|||||+||+.+|-+++.-+-.....                    +.        
T Consensus         8 i~~~~~~~~~F~l~----~~d~s~ANalRRi~iaeV~t~v~feyDp~N~l--------------------rH--------   55 (135)
T d1twfc1           8 IREASKDNVDFILS----NVDLAMANSLRRVMIAEIAAAIEFEYDPWNKL--------------------KH--------   55 (135)
T ss_dssp             CSCCCSSEECCEEB----SSCHHHHHHHHHHHHHCCEEEEEEEECSSTTS--------------------CC--------
T ss_pred             EEECCCCEEEEEEE----CCCHHHHHHHHHHHHHHHHHHEEEEECCCCCC--------------------CC--------
T ss_conf             99747977999994----78889999999999985023313663354552--------------------44--------


Q ss_pred             CCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEECCCCCHHE
Q ss_conf             82799999944716996335138985998888089997789649999997468763203444465575430212431111
Q gi|254780237|r  100 SHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSP  179 (340)
Q Consensus       100 ~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~iDa~FsP  179 (340)
                                                                           .-|...+. ..+.     +|. +-++|
T Consensus        56 -----------------------------------------------------tdyw~e~~-~~~e-----wP~-s~~~~   75 (135)
T d1twfc1          56 -----------------------------------------------------TDYWYEQD-SAKE-----WPQ-SKNCE   75 (135)
T ss_dssp             -----------------------------------------------------SCCCCSSC-HHHH-----SCC-CGGGT
T ss_pred             -----------------------------------------------------EEECCCCC-CCCC-----CCC-CCCCC
T ss_conf             -----------------------------------------------------13214678-5011-----786-55777


Q ss_pred             EEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             442235776411688776218999999389617779999999999998887622
Q gi|254780237|r  180 IKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFIN  233 (340)
Q Consensus       180 V~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~  233 (340)
                      ...-...-+......  .-++-+|.|+|-|++.|.+-+.+|.++|+.-+.-|..
T Consensus        76 ~e~~~~e~e~fd~~a--kpd~F~f~VEs~G~l~p~~Iv~~ai~iL~~Kl~~l~~  127 (135)
T d1twfc1          76 YEDPPNEGDPFDYKA--QADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILL  127 (135)
T ss_dssp             TSCCCCSSSCCCTTC--CCCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCC--CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             778754345778778--9877999987046789899999999999999999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: RBP11-like subunits of RNA polymerase
family: RNA polymerase alpha subunit dimerisation domain
domain: RPB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]