BLAST/PSIBLAST alignment of GI: 254780237 and GI: 13470575 at iteration 1
>gi|13470575|ref|NP_102144.1| DNA-directed RNA polymerase subunit alpha [Mesorhizobium loti MAFF303099] Length = 336
>gi|260468530|ref|ZP_05813697.1| DNA-directed RNA polymerase, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 336
>gi|20139638|sp|Q98N33|RPOA_RHILO RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|14021317|dbj|BAB47930.1| DNA-directed RNA polymerase alpha subunit [Mesorhizobium loti MAFF303099] Length = 336
>gi|259028686|gb|EEW29995.1| DNA-directed RNA polymerase, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 336
 Score =  491 bits (1264), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/339 (69%), Positives = 282/339 (83%), Gaps = 4/339 (1%)

Query: 1   MIQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAI 60
           MIQKNWQELIKPN IE+     +++  T ++AEPL RGF  TLGNALRRVL+SSLRGAA+
Sbjct: 1   MIQKNWQELIKPNKIEF---SSKKKTLTTLVAEPLERGFGLTLGNALRRVLLSSLRGAAV 57

Query: 61  TAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQ 120
           TAVQIDGVLHE SSI GV ED+TDI+LNIK I ++M GD  KR+ + K+GPG V AGDIQ
Sbjct: 58  TAVQIDGVLHEFSSIAGVREDVTDIVLNIKEIAIRMEGDGPKRMVVRKQGPGAVLAGDIQ 117

Query: 121 TVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180
           TV D+E+LNPDHVIC LD  A +RME TV  G GYVPA+ +R E+ PIGLI +D+LYSP+
Sbjct: 118 TVGDVEILNPDHVICTLDEGAEIRMEFTVDTGKGYVPAERNRAEDAPIGLIPVDSLYSPV 177

Query: 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKE 240
           KKVSY VE+ REGQVLDYDKL+MTI+TDGSI+GED+VA A+RILQDQLG+F+NF+EP+KE
Sbjct: 178 KKVSYKVENTREGQVLDYDKLTMTIETDGSISGEDAVAFAARILQDQLGLFVNFDEPQKE 237

Query: 241 VKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGR 300
           V  +  V  L FNPALLKKV+ELELSVRS NCL+ +NIVY+GDLIQ+TEA+MLR  NFGR
Sbjct: 238 VAAEA-VTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296

Query: 301 KSLVEIKGVLGTMGLFLGMNLPDWPPESIEELAKKYEDK 339
           KSL EIK VL  MGL LGM +PDWPPE+IE+LAK+YED+
Sbjct: 297 KSLNEIKEVLAAMGLHLGMEVPDWPPENIEDLAKRYEDQ 335