PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1hqm

>gi|13096176|pdb|1HQM|A Chain A, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 313
>gi|13096177|pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 313
 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 108/297 (36%), Positives = 164/297 (55%), Gaps = 3/297 (1%)

Query: 23  EEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDL 82
           + ++    + EPL RGF  TLGN LRR+L+SS+ G A+T+V I+ VLHE S+I GV ED+
Sbjct: 16  QGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDV 75

Query: 83  TDIILNIKGINLKMSGDSHK-RVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDA 141
            +IILN+K + ++      +  + +   GP  V A D     D+E++NPD  I  L+   
Sbjct: 76  VEIILNLKELVVRFLDPRWRTTLILRAEGPKEVRAVDFTPSADVEIMNPDLHIATLEEGG 135

Query: 142 VVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKL 201
            + ME+ V +G GYVPA+ H  ++  I  I +DA++SP+++V++ VE  R GQ  D DKL
Sbjct: 136 KLYMEVRVDRGVGYVPAERHGIKDR-INAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKL 194

Query: 202 SMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP-KKEVKEDINVKSLPFNPALLKKV 260
           ++ I TDGS+T  +++  A  IL++ L  F N E       +     K       L   +
Sbjct: 195 TLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSKGEKRESAEEDLDLPL 254

Query: 261 EELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFL 317
           EEL LS R  + L+ E I  +  L+     D+  +   G +SL EI+  L   G  L
Sbjct: 255 EELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGERSLEEIRQALAKKGFTL 311