PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1hqm
>gi|13096176|pdb|1HQM|A Chain A, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 313
>gi|13096177|pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 313
Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats.
Identities = 108/297 (36%), Positives = 164/297 (55%), Gaps = 3/297 (1%)
Query: 23 EEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDL 82
+ ++ + EPL RGF TLGN LRR+L+SS+ G A+T+V I+ VLHE S+I GV ED+
Sbjct: 16 QGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDV 75
Query: 83 TDIILNIKGINLKMSGDSHK-RVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDA 141
+IILN+K + ++ + + + GP V A D D+E++NPD I L+
Sbjct: 76 VEIILNLKELVVRFLDPRWRTTLILRAEGPKEVRAVDFTPSADVEIMNPDLHIATLEEGG 135
Query: 142 VVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKL 201
+ ME+ V +G GYVPA+ H ++ I I +DA++SP+++V++ VE R GQ D DKL
Sbjct: 136 KLYMEVRVDRGVGYVPAERHGIKDR-INAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDKL 194
Query: 202 SMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP-KKEVKEDINVKSLPFNPALLKKV 260
++ I TDGS+T +++ A IL++ L F N E + K L +
Sbjct: 195 TLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSKGEKRESAEEDLDLPL 254
Query: 261 EELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFL 317
EEL LS R + L+ E I + L+ D+ + G +SL EI+ L G L
Sbjct: 255 EELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGERSLEEIRQALAKKGFTL 311