PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1l9u
gi|21466003|pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 314
>gi|21466004|pdb|1L9U|B Chain B, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 314
Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats.
Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 4/298 (1%)
Query: 23 EEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDL 82
+ ++ + EPL RGF TLGN LRR+L+SS+ G A+T+V I+ VLHE S+I GV ED+
Sbjct: 16 QGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDV 75
Query: 83 TDIILNIKGINLKMSGDS--HKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVD 140
+IILN+K + ++ + + GP V AGD D+E++NPD I L+
Sbjct: 76 VEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEG 135
Query: 141 AVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDK 200
+ ME+ V +G GYVPA+ H ++ I I +DA++SP+++V++ VE R GQ D DK
Sbjct: 136 GKLYMEVRVDRGVGYVPAERHGIKDR-INAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDK 194
Query: 201 LSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP-KKEVKEDINVKSLPFNPALLKK 259
L++ I TDGS+T +++ A IL++ L F N E + K L
Sbjct: 195 LTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSKGEKRESAEEDLDLP 254
Query: 260 VEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFL 317
+EEL LS R + L+ E I + L+ D+ + G +SL EI+ L G L
Sbjct: 255 LEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGERSLEEIRQALAKKGFTL 312