PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1l9u

gi|21466003|pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 314
>gi|21466004|pdb|1L9U|B Chain B, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 314
 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 4/298 (1%)

Query: 23  EEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDL 82
           + ++    + EPL RGF  TLGN LRR+L+SS+ G A+T+V I+ VLHE S+I GV ED+
Sbjct: 16  QGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDV 75

Query: 83  TDIILNIKGINLKMSGDS--HKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVD 140
            +IILN+K + ++          + +   GP  V AGD     D+E++NPD  I  L+  
Sbjct: 76  VEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATLEEG 135

Query: 141 AVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDK 200
             + ME+ V +G GYVPA+ H  ++  I  I +DA++SP+++V++ VE  R GQ  D DK
Sbjct: 136 GKLYMEVRVDRGVGYVPAERHGIKDR-INAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDK 194

Query: 201 LSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP-KKEVKEDINVKSLPFNPALLKK 259
           L++ I TDGS+T  +++  A  IL++ L  F N E       +     K       L   
Sbjct: 195 LTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSKGEKRESAEEDLDLP 254

Query: 260 VEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFL 317
           +EEL LS R  + L+ E I  +  L+     D+  +   G +SL EI+  L   G  L
Sbjct: 255 LEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGERSLEEIRQALAKKGFTL 312