RPSBLAST alignment of GI: 254780237 and MMDB domain: 3iyd_A_1-48_181-246

>3iyd_A (A:1-48,A:181-246) DNA-directed RNA polymerase subunit alpha; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}Length = 114

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 20/65 (30%), Positives = 43/65 (66%)

Query: 180 IKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKK 239
           +++++Y VE+AR  Q  D DKL + ++T+G+I  E+++  A+ IL +QL  F++  + ++
Sbjct: 48  LERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 107

Query: 240 EVKED 244
              ++
Sbjct: 108 PEVKE 112