RPSBLAST alignment of GI: 254780237 and protein with PDBid: 1bdf

>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1 Length = 235

 Score =  241 bits (617), Expect = 1e-64
 Identities = 99/237 (41%), Positives = 151/237 (63%), Gaps = 7/237 (2%)

Query: 2   IQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAIT 61
           +Q +  E +KP  ++     Q       +  EPL RGF HTLGNALR +L+SS+ G A+T
Sbjct: 1   MQGSVTEFLKPRLVDIE---QVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVT 57

Query: 62  AVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQT 121
            V+IDGVLHE S+ +GV ED+ +I+LN+KG+ +++ G     +T+ K G G VTA DI  
Sbjct: 58  EVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH 117

Query: 122 VNDIEVLNPDHVICNLDV-DAVVRMELTVSKGHGYVPA---KHHRTENDPIGLITIDALY 177
             D+E++ P HVIC+L   +A + M + V +G GYVPA    H   +  PIG + +DA Y
Sbjct: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177

Query: 178 SPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINF 234
           SP+++++Y VE+AR  Q  D DKL + ++T+G+I  E+++  A+ IL +QL  F++ 
Sbjct: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL 234