RPSBLAST alignment of GI: 254780237 and protein with PDBid: 1twf
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ... Length = 318
Score = 131 bits (331), Expect = 2e-31
Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 43/260 (16%)
Query: 37 RGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIIL 87
+ N+LRRV+++ + AI +V++ + + H + I D+ +
Sbjct: 23 SNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEY 82
Query: 88 NIKGINLKMSGDSHK----RVTIFKRGPGVVTAGDIQTVND-----------IEVLNPDH 132
+ + V + D+ V++ +
Sbjct: 83 SRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGV 142
Query: 133 VICNLDVDAVVRMELTVSKGHGYVPAK-------------HHRTENDPIGLITIDALYSP 179
+IC L +++ KG AK ++ ++ A P
Sbjct: 143 LICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWP 202
Query: 180 IKKVSYTVESAREGQVLDY----DKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE 235
K + EG DY D M +++ GSI + V LQ ++ +
Sbjct: 203 QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASIL--L 260
Query: 236 EPKKEVKEDINVKSLPFNPA 255
+ ++ +N S N A
Sbjct: 261 ALTQMDQDKVNFASGDNNTA 280