RPSBLAST alignment of GI: 254780237 and protein with PDBid: 1twf

>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ... Length = 318
 Score =  131 bits (331), Expect = 2e-31
 Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 43/260 (16%)

Query: 37  RGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIIL 87
                 + N+LRRV+++ +   AI +V++         + + H +  I     D+  +  
Sbjct: 23  SNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEY 82

Query: 88  NIKGINLKMSGDSHK----RVTIFKRGPGVVTAGDIQTVND-----------IEVLNPDH 132
           +                  +          V + D+  V++            +      
Sbjct: 83  SRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGV 142

Query: 133 VICNLDVDAVVRMELTVSKGHGYVPAK-------------HHRTENDPIGLITIDALYSP 179
           +IC L     +++     KG     AK              ++ ++         A   P
Sbjct: 143 LICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWP 202

Query: 180 IKKVSYTVESAREGQVLDY----DKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE 235
             K     +   EG   DY    D   M +++ GSI  +  V      LQ ++   +   
Sbjct: 203 QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASIL--L 260

Query: 236 EPKKEVKEDINVKSLPFNPA 255
              +  ++ +N  S   N A
Sbjct: 261 ALTQMDQDKVNFASGDNNTA 280