RPSBLAST alignment of GI: 254780237 and protein with PDBid: 2a6h

>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* 2gho_A 1hqm_A ... Length = 315

 Score =  297 bits (762), Expect = 2e-81
 Identities = 115/316 (36%), Positives = 167/316 (52%), Gaps = 8/316 (2%)

Query: 6   WQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI 65
               +K         G         + EPL RGF  TLGN LRR+L+SS+ G A+T+V I
Sbjct: 2   LDSKLKAPVFTVRTQG---REYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYI 58

Query: 66  DGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKR--GPGVVTAGDIQTVN 123
           + VLHE S+I GV ED+ +IILN+K + ++    S + VT+  +  GP  V A D   V 
Sbjct: 59  EDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVA 118

Query: 124 DIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKV 183
           D+E++NPD  I  L+    + ME+ V +G GYVPA+ H    D I  I +DA++SP+++V
Sbjct: 119 DVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGI-KDRINAIPVDAVFSPVRRV 177

Query: 184 SYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKEVKE 243
           ++ VE  R GQ  D DKL++ I TDGS+T  +++  A  IL++ L  F N +       E
Sbjct: 178 AFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPE 237

Query: 244 DINVKS--LPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRK 301
           +             L   +EEL LS R  + L+ E I  +  L+     D+  +   G +
Sbjct: 238 EAKEPEAPPEQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGER 297

Query: 302 SLVEIKGVLGTMGLFL 317
           SL EIK  L   G  L
Sbjct: 298 SLEEIKEALEKKGFTL 313