RPSBLAST alignment of GI: 254780237 and protein with PDBid: 2pa8

>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D Length = 265

 Score =  132 bits (334), Expect = 8e-32
 Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 44/246 (17%)

Query: 32  AEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDL 82
            + +  G+     NA+RR  M  +   A+  V           + + H ++ I  + E+ 
Sbjct: 13  IDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEA 72

Query: 83  TDIILNIKGINLKMSGDSHKRVTIFKR-----GPGVVTAGDIQTVND-IEVLNPDHVICN 136
            D     +               I+        P ++ + DI++ +  +  ++ D  I  
Sbjct: 73  LDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVL 132

Query: 137 LDVDAVVRMELTVSKGHGYVPAKHHRT---------------------ENDPIGLITI-- 173
           L  +  + +E  +  G+G   AK                            P G+  +  
Sbjct: 133 LGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCEKAVNVCPEGVFELKD 192

Query: 174 ------DALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQ 227
                 + L   + +      +         DK  + I++ GS+  E  +  A + +  +
Sbjct: 193 GKLSVKNELSCTLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRK 252

Query: 228 LGMFIN 233
           +     
Sbjct: 253 IEELEK 258