RPSBLAST alignment of GI: 254780237 and protein with PDBid: 3h0g

>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 297

 Score =  126 bits (316), Expect = 9e-30
 Identities = 40/253 (15%), Positives = 84/253 (33%), Gaps = 45/253 (17%)

Query: 37  RGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIIL 87
              +  + N+LRRV+++ +   AI  V+I         + + H +  I     ++ +   
Sbjct: 22  TNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPP 81

Query: 88  NIKGINLKMSGDS---------HKRVTIFKRGPGVVTAGDIQTVNDIEVLNP-------- 130
                      D                   G   + A D+   ++  + +P        
Sbjct: 82  VGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSR 141

Query: 131 DHVICNLDVDAVVRMELTVSKGHGYVPAKHH-------------RTENDPIGLITIDALY 177
             +IC L  +  + +     KG     AK               + ++            
Sbjct: 142 GPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAE 201

Query: 178 SPIKKVSYTVESAREGQVLDY----DKLSMTIDTDGSITGEDSVALASRILQDQLGMFIN 233
            P  K +   E  REG+  ++     +  M +++ GSI   + +    RILQ++L + + 
Sbjct: 202 WPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVR 261

Query: 234 F--EEPKKEVKED 244
              EE   ++  +
Sbjct: 262 DLDEEQPTQLSAN 274