HHsearch alignment for GI: 254780238 and conserved domain: CHL00041

>CHL00041 rps11 ribosomal protein S11.
Probab=100.00  E-value=5.1e-43  Score=284.10  Aligned_cols=114  Identities=44%  Similarity=0.753  Sum_probs=111.8

Q ss_pred             CCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             33430012252189999179877999970899889974044435577543352037899999999999869819999997
Q gi|254780238|r    8 IRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVS   87 (129)
Q Consensus         8 ~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ik   87 (129)
T Consensus         3 ~~kk~k~~~~~Gi~hI~~t~NNTiitlTD~~Gn~l~~~S~G~~gfKg~rK~T~~Aa~~aa~~~~~~a~~~Gi~~v~v~vk   82 (116)
T CHL00041          3 GSRKSKRKIPKGVIHIQASFNNTIVTVTDVRGRVISWSSAGACGFKGRRKGTPFAAQTAAENAIRTVIDQGMKRAEVMIK   82 (116)
T ss_pred             CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             65555555866799999447988999984999999998077311588876898899999999999999739849999997


Q ss_pred             CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf             7998678887787636936999996388988886
Q gi|254780238|r   88 GLGAGRDSALRALRAIGFTIVSICDVTMIAHNGC  121 (129)
Q Consensus        88 G~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGc  121 (129)
T Consensus        83 G~G~GR~~aik~l~~~glkI~~I~D~TpiphNGC  116 (116)
T CHL00041         83 GPGLGRDTALRAIRRSGLKLSSIRDVTPMPHNGC  116 (116)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf             8884589999999878988999998999999998