HHsearch alignment for GI: 254780238 and conserved domain: CHL00041
>CHL00041 rps11 ribosomal protein S11.
Probab=100.00 E-value=5.1e-43 Score=284.10 Aligned_cols=114 Identities=44% Similarity=0.753 Sum_probs=111.8
Q ss_pred CCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 33430012252189999179877999970899889974044435577543352037899999999999869819999997
Q gi|254780238|r 8 IRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVS 87 (129)
Q Consensus 8 ~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ik 87 (129)
T Consensus 3 ~~kk~k~~~~~Gi~hI~~t~NNTiitlTD~~Gn~l~~~S~G~~gfKg~rK~T~~Aa~~aa~~~~~~a~~~Gi~~v~v~vk 82 (116)
T CHL00041 3 GSRKSKRKIPKGVIHIQASFNNTIVTVTDVRGRVISWSSAGACGFKGRRKGTPFAAQTAAENAIRTVIDQGMKRAEVMIK 82 (116)
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 65555555866799999447988999984999999998077311588876898899999999999999739849999997
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 7998678887787636936999996388988886
Q gi|254780238|r 88 GLGAGRDSALRALRAIGFTIVSICDVTMIAHNGC 121 (129)
Q Consensus 88 G~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGc 121 (129)
T Consensus 83 G~G~GR~~aik~l~~~glkI~~I~D~TpiphNGC 116 (116)
T CHL00041 83 GPGLGRDTALRAIRRSGLKLSSIRDVTPMPHNGC 116 (116)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf 8884589999999878988999998999999998