HHsearch alignment for GI: 254780238 and conserved domain: PRK09607
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed.
Probab=100.00 E-value=4.9e-44 Score=290.37 Aligned_cols=116 Identities=40% Similarity=0.524 Sum_probs=111.2
Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCC-CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECC--
Q ss_conf 012252189999179877999970899-88997404443557754335203789999999999986981999999779--
Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHG-NTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGL-- 89 (129)
Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~G-n~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~-- 89 (129)
T Consensus 1 krk~~~GivhI~asfNNTivtvTD~~G~~~~~~ssgg~~~k~~~kK~Tp~AAq~aae~~~~~a~~~Gi~~v~V~vkG~G~ 80 (129)
T PRK09607 1 QRKEKWGIAHIYASFNNTIITITDLTGAETIAKVSGGMVVKADRDEPSPYAAMQAAFRAAELAKDKGITGVHIKVRAPGG 80 (129)
T ss_pred CCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 98540489999936898599998599996999947763004888768989999999999999997698589999983787
Q ss_pred ------CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf ------986788877876369369999963889888868888678
Q gi|254780238|r 90 ------GAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129)
Q Consensus 90 ------G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129)
T Consensus 81 ~~~k~pGpGr~~air~l~~~Gl~I~~I~DvTpiPhNGcRp~K~RR 125 (129)
T PRK09607 81 NGSKTPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGTRPPGGRR 125 (129)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 776788842899999998689789898870989989989899877