HHsearch alignment for GI: 254780238 and conserved domain: TIGR03632
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=100.00 E-value=9.8e-45 Score=294.63 Aligned_cols=108 Identities=56% Similarity=0.957 Sum_probs=107.0
Q ss_pred EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
Q ss_conf 18999917987799997089988997404443557754335203789999999999986981999999779986788877
Q gi|254780238|r 19 GRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALR 98 (129)
Q Consensus 19 GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik 98 (129)
T Consensus 1 Gi~hI~~s~NNTiit~Td~~Gn~~~~~S~G~~gfKg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~V~ikG~G~Gr~~air 80 (108)
T TIGR03632 1 GVAHIHATFNNTIVTITDPQGNVLSWASAGAVGFKGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIR 80 (108)
T ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHH
T ss_conf 98999935787899998799999999947733327765588899999999999999970961999999689974799999
Q ss_pred HHHHCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 8763693699999638898888688886
Q gi|254780238|r 99 ALRAIGFTIVSICDVTMIAHNGCRPRKR 126 (129)
Q Consensus 99 ~l~~~glkI~~I~D~T~ip~nGcRp~K~ 126 (129)
T Consensus 81 ~l~~~glkI~~I~D~TpiphnGcRp~Kk 108 (108)
T TIGR03632 81 ALQAAGLEVTSIKDVTPIPHNGCRPPKR 108 (108)
T ss_pred HHHHCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 9998898899999889999899898989