HHsearch alignment for GI: 254780238 and conserved domain: pfam00861
>pfam00861 Ribosomal_L18p Ribosomal L18p/L5e family. This family includes ribosomal proteins from the large subunit. This family includes L18 from bacteria and L5 from eukaryotes. It has been shown that the amino terminal 93 amino acids of the rat 60S ribosomal protein L5 are necessary and sufficient to bind 5S rRNA in vitro. Suggesting that the entire family has a function in rRNA binding.
Probab=96.98 E-value=0.0057 Score=39.07 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCEEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 5218999917987799997089-9889974044435577----5433520378999999999998698199999977998
Q gi|254780238|r 17 VSGRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSG----SRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGA 91 (129)
Q Consensus 17 ~~GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg----~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~ 91 (129)
T Consensus 22 ~rpRL~V~rSNkhiyaQiIdd~~~~tl~saSt~~k~lkk~~~k~~~~n~~aA~~vG~~ia~ka~~~gi~~v~fDR~g~~y 101 (119)
T pfam00861 22 ERPRLVVRRSNKHIYAQIIDDTKGGTLVSASTLSKELKKYGLKGGGNNTAAAYLVGLLLAKRALKKGIAVVVFDRGGYTY 101 (119)
T ss_pred CCCEEEEEEECCEEEEEEEECCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99889999968948999998689988999973405677734446776499999999999999998799889983899844
Q ss_pred -CH-HHHHHHHHHCCCE
Q ss_conf -67-8887787636936
Q gi|254780238|r 92 -GR-DSALRALRAIGFT 106 (129)
Q Consensus 92 -GR-~~~ik~l~~~glk 106 (129)
T Consensus 102 hGrvka~A~~aRe~Gl~ 118 (119)
T pfam00861 102 HGRVFALAKGAREAGLN 118 (119)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 59999999999983888