HHsearch results for GI: 254780238 and protein with PDBid: 1vq8_N
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=97.47 E-value=0.00075 Score=43.13 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCEEEEEEECCCCEEEEEE--CCCC-CEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--EECC
Q ss_conf 5218999917987799997--0899-889974044435577543--3520378999999999998698199999--9779
Q gi|254780238|r 17 VSGRAHVVSTFNNTRITIT--DPHG-NTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVK--VSGL 89 (129)
Q Consensus 17 ~~GiihI~~t~NNTiitlT--d~~G-n~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~--ikG~ 89 (129)
.+..+.|+.|.+|+++.+. |..| .+++.+|+-.+..+|-+. ....||+.++..+++++++.|+..+.+- ..|+
T Consensus 31 ~kpRLvVr~SNk~I~aQii~~d~~gd~~l~sasS~el~k~g~k~~~~N~~AAy~~G~llakra~~kgi~~~vfD~G~~~~ 110 (187)
T 1vq8_N 31 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSP 110 (187)
T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSCC
T ss_pred CCCEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99769999838938999998438999899999705065404225874789999999999999985056715772277788
Q ss_pred CC-CH-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 98-67-88877876369369999963889888868888
Q gi|254780238|r 90 GA-GR-DSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129)
Q Consensus 90 G~-GR-~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129)
-. || .+++++....||+| ||+--+-|.
T Consensus 111 ~yhgRV~A~akgard~GL~I---------ph~~~~~p~ 139 (187)
T 1vq8_N 111 TPGSKVFAIQEGAIDAGLDI---------PHNDDVLAD 139 (187)
T ss_dssp CTTCHHHHHHHHHHHTTCBC---------CCCGGGSCC
T ss_pred CCCHHHHHHHHHHHHCCCCC---------CCCCCCCCC
T ss_conf 64379999999999749578---------898875888