HHsearch results for GI: 254780238 and protein with PDBid: 1vq8_N

>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=97.47  E-value=0.00075  Score=43.13  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             CCEEEEEEECCCCEEEEEE--CCCC-CEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--EECC
Q ss_conf             5218999917987799997--0899-889974044435577543--3520378999999999998698199999--9779
Q gi|254780238|r   17 VSGRAHVVSTFNNTRITIT--DPHG-NTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVK--VSGL   89 (129)
Q Consensus        17 ~~GiihI~~t~NNTiitlT--d~~G-n~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~--ikG~   89 (129)
                      .+..+.|+.|.+|+++.+.  |..| .+++.+|+-.+..+|-+.  ....||+.++..+++++++.|+..+.+-  ..|+
T Consensus        31 ~kpRLvVr~SNk~I~aQii~~d~~gd~~l~sasS~el~k~g~k~~~~N~~AAy~~G~llakra~~kgi~~~vfD~G~~~~  110 (187)
T 1vq8_N           31 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSP  110 (187)
T ss_dssp             CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSCC
T ss_pred             CCCEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99769999838938999998438999899999705065404225874789999999999999985056715772277788


Q ss_pred             CC-CH-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             98-67-88877876369369999963889888868888
Q gi|254780238|r   90 GA-GR-DSALRALRAIGFTIVSICDVTMIAHNGCRPRK  125 (129)
Q Consensus        90 G~-GR-~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K  125 (129)
                      -. || .+++++....||+|         ||+--+-|.
T Consensus       111 ~yhgRV~A~akgard~GL~I---------ph~~~~~p~  139 (187)
T 1vq8_N          111 TPGSKVFAIQEGAIDAGLDI---------PHNDDVLAD  139 (187)
T ss_dssp             CTTCHHHHHHHHHHHTTCBC---------CCCGGGSCC
T ss_pred             CCCHHHHHHHHHHHHCCCCC---------CCCCCCCCC
T ss_conf             64379999999999749578---------898875888