HHsearch results for GI: 254780238 and protein with PDBid: 2vqe_K

>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00  E-value=0  Score=312.54  Aligned_cols=126  Identities=51%  Similarity=0.857  Sum_probs=121.6

Q ss_pred             CCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             98876443343001225218999917987799997089988997404443557754335203789999999999986981
Q gi|254780238|r    1 MPKSPSRIRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMS   80 (129)
Q Consensus         1 m~~~~~~~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~   80 (129)
                      |++...  +++.+++++.|++||++|+|||||||||++||+++|+|+|++||+|++|+|||||+++++.++++++++||+
T Consensus         1 m~~~~~--~~~~k~~i~~GivhI~~t~NNTiitlTD~~Gn~i~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~k~~~~Gi~   78 (129)
T 2vqe_K            1 MAKKPS--KKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQ   78 (129)
T ss_dssp             ------------CCCCSEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCCC--CCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             998776--665431512528999806798999998799999999835731137755476889999999999999981981


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             999999779986788877876369369999963889888868888678
Q gi|254780238|r   81 SLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR  128 (129)
Q Consensus        81 ~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR  128 (129)
                      .|+|+++|||+||+++|++|...||+|.+|+|+||+|||||||||+||
T Consensus        79 ~v~V~~kG~G~GR~~aik~l~~~glkI~~I~D~TpiphNGcRp~K~RR  126 (129)
T 2vqe_K           79 SVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR  126 (129)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             999999899997299999998789879999989999979989798887