HHsearch results for GI: 254780238 and protein with PDBid: 2vqe_K
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00 E-value=0 Score=312.54 Aligned_cols=126 Identities=51% Similarity=0.857 Sum_probs=121.6
Q ss_pred CCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 98876443343001225218999917987799997089988997404443557754335203789999999999986981
Q gi|254780238|r 1 MPKSPSRIRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMS 80 (129)
Q Consensus 1 m~~~~~~~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~ 80 (129)
|++... +++.+++++.|++||++|+|||||||||++||+++|+|+|++||+|++|+|||||+++++.++++++++||+
T Consensus 1 m~~~~~--~~~~k~~i~~GivhI~~t~NNTiitlTD~~Gn~i~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~k~~~~Gi~ 78 (129)
T 2vqe_K 1 MAKKPS--KKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQ 78 (129)
T ss_dssp ------------CCCCSEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCC--CCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998776--665431512528999806798999998799999999835731137755476889999999999999981981
Q ss_pred EEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999999779986788877876369369999963889888868888678
Q gi|254780238|r 81 SLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129)
Q Consensus 81 ~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129)
.|+|+++|||+||+++|++|...||+|.+|+|+||+|||||||||+||
T Consensus 79 ~v~V~~kG~G~GR~~aik~l~~~glkI~~I~D~TpiphNGcRp~K~RR 126 (129)
T 2vqe_K 79 SVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 126 (129)
T ss_dssp EEEEEEESCCTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 999999899997299999998789879999989999979989798887