Query gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 107 out of 1080 Neff 5.7 Searched_HMMs 23785 Date Tue May 24 00:15:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780238.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2vqe_K 30S ribosomal protein S 100.0 0 0 312.5 14.8 126 1-128 1-126 (129) 2 3bbn_K Ribosomal protein S11; 100.0 0 0 312.5 10.9 122 8-129 19-140 (140) 3 3ofo_K 30S ribosomal protein S 100.0 1.4E-45 0 299.5 9.9 117 13-129 1-117 (117) 4 2zkq_k 40S ribosomal protein S 100.0 6.7E-44 0 288.2 9.7 116 13-128 23-147 (151) 5 1s1h_K RP59A, 40S ribosomal pr 100.0 9.4E-42 0 275.0 13.8 117 12-128 7-132 (136) 6 1vq8_N 50S ribosomal protein L 97.5 0.00075 3.1E-08 43.1 9.0 100 17-125 31-139 (187) 7 1ovy_A 50S ribosomal protein L 97.0 0.00073 3.1E-08 43.2 4.7 87 19-106 29-119 (120) 8 3bbo_Q Ribosomal protein L18; 96.2 0.0028 1.2E-07 39.6 3.3 87 19-106 66-160 (161) 9 2j01_S 50S ribosomal protein L 95.2 0.028 1.2E-06 33.5 5.1 86 17-106 22-111 (112) 10 2zjr_L 50S ribosomal protein L 94.8 0.014 5.9E-07 35.3 2.7 84 18-106 26-113 (114) 11 3ofq_O 50S ribosomal protein L 93.5 0.0031 1.3E-07 39.3 -2.8 87 19-106 23-115 (116) 12 3jyw_E 60S ribosomal protein L 81.4 0.76 3.2E-05 24.7 2.5 104 12-125 32-172 (237) 13 2zkr_n 60S ribosomal protein L 81.3 3 0.00013 21.1 10.0 100 15-124 45-181 (297) 14 3k92_A NAD-GDH, NAD-specific g 70.1 5.1 0.00021 19.7 4.3 61 54-115 195-255 (424) 15 1gtm_A Glutamate dehydrogenase 69.8 5 0.00021 19.7 4.2 56 56-115 187-247 (419) 16 1bgv_A Glutamate dehydrogenase 67.2 6.2 0.00026 19.2 4.2 63 54-117 204-266 (449) 17 2i5p_O GAPDH 1, glyceraldehyde 62.7 5 0.00021 19.7 3.0 36 77-112 10-46 (342) 18 2bma_A Glutamate dehydrogenase 58.4 5.7 0.00024 19.4 2.7 61 56-117 228-288 (470) 19 2b4r_O Glyceraldehyde-3-phosph 57.5 7.7 0.00032 18.6 3.3 33 80-112 10-43 (345) 20 3cmc_O GAPDH, glyceraldehyde-3 55.4 11 0.00045 17.7 3.7 10 107-116 174-183 (334) 21 2tmg_A Protein (glutamate dehy 52.5 12 0.00052 17.3 6.4 49 67-115 193-244 (415) 22 1v9l_A Glutamate dehydrogenase 50.2 13 0.00057 17.1 4.3 44 76-119 205-248 (421) 23 3kws_A Putative sugar isomeras 48.0 14 0.0006 16.9 3.4 18 67-84 106-123 (287) 24 2dg5_B Gamma-glutamyltranspept 47.3 15 0.00061 16.9 3.3 18 30-47 2-19 (190) 25 2v36_B Gamma-glutamyltranspept 44.5 17 0.00069 16.5 3.3 18 30-47 2-19 (193) 26 3mw9_A GDH 1, glutamate dehydr 40.1 19 0.00081 16.1 3.8 64 55-118 211-281 (501) 27 2i3o_A Gamma-glutamyltransfera 38.5 21 0.00086 16.0 3.1 21 28-48 330-350 (516) 28 3cps_A Glyceraldehyde 3-phosph 37.9 21 0.00088 15.9 3.1 32 81-112 17-49 (354) 29 2qmc_B GGT, gamma-glutamyltran 33.4 25 0.001 15.5 3.3 18 30-47 2-19 (188) 30 2ji4_A Phosphoribosyl pyrophos 33.3 25 0.001 15.5 5.0 59 66-126 287-346 (379) 31 2eq6_A Pyruvate dehydrogenase 32.3 17 0.00073 16.4 1.8 44 64-108 178-228 (464) 32 3g9k_S Capsule biosynthesis pr 32.1 26 0.0011 15.3 3.4 17 93-109 123-139 (177) 33 2jvf_A De novo protein M7; tet 30.1 28 0.0012 15.1 4.1 28 62-89 61-88 (96) 34 1qys_A TOP7; alpha-beta, novel 30.0 28 0.0012 15.1 4.5 28 62-89 59-86 (106) 35 1tuo_A Putative phosphomannomu 27.9 31 0.0013 14.9 5.3 59 57-115 26-87 (464) 36 3h9e_A Glyceraldehyde-3-phosph 24.8 35 0.0015 14.5 3.1 14 76-91 116-129 (346) 37 1vht_A Dephospho-COA kinase; s 23.5 37 0.0016 14.4 4.8 33 77-109 1-33 (218) 38 2cyg_A Beta-1, 3-glucananse; e 23.2 38 0.0016 14.4 4.3 29 73-106 21-49 (312) 39 3em5_A Beta-1,3-glucanase; gly 22.3 39 0.0016 14.2 3.8 11 96-106 40-50 (316) 40 2hxv_A Diaminohydroxyphosphori 21.0 42 0.0017 14.1 4.3 38 71-108 99-136 (360) 41 3iwa_A FAD-dependent pyridine 21.0 42 0.0017 14.1 3.5 27 80-106 184-218 (472) 42 2nlz_A Cephalosporin acylase; 20.6 43 0.0018 14.0 3.3 23 26-48 355-377 (547) 43 3hja_A GAPDH, glyceraldehyde-3 20.5 43 0.0018 14.0 3.8 37 77-114 17-54 (356) 44 2g82_O GAPDH, glyceraldehyde-3 20.2 43 0.0018 14.0 3.1 18 72-91 104-121 (331) 45 1rm4_O Glyceraldehyde 3-phosph 20.1 44 0.0018 14.0 3.9 14 75-90 112-125 (337) No 1 >2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Probab=100.00 E-value=0 Score=312.54 Aligned_cols=126 Identities=51% Similarity=0.857 Sum_probs=121.6 Q ss_pred CCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 98876443343001225218999917987799997089988997404443557754335203789999999999986981 Q gi|254780238|r 1 MPKSPSRIRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMS 80 (129) Q Consensus 1 m~~~~~~~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~ 80 (129) |++... +++.+++++.|++||++|+|||||||||++||+++|+|+|++||+|++|+|||||+++++.++++++++||+ T Consensus 1 m~~~~~--~~~~k~~i~~GivhI~~t~NNTiitlTD~~Gn~i~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~k~~~~Gi~ 78 (129) T 2vqe_K 1 MAKKPS--KKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQ 78 (129) T ss_dssp ------------CCCCSEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCC T ss_pred CCCCCC--CCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 998776--665431512528999806798999998799999999835731137755476889999999999999981981 Q ss_pred EEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC Q ss_conf 999999779986788877876369369999963889888868888678 Q gi|254780238|r 81 SLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129) Q Consensus 81 ~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129) .|+|+++|||+||+++|++|...||+|.+|+|+||+|||||||||+|| T Consensus 79 ~v~V~~kG~G~GR~~aik~l~~~glkI~~I~D~TpiphNGcRp~K~RR 126 (129) T 2vqe_K 79 SVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 126 (129) T ss_dssp EEEEEEESCCTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGC T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC T ss_conf 999999899997299999998789879999989999979989798887 No 2 >3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=100.00 E-value=0 Score=312.46 Aligned_cols=122 Identities=41% Similarity=0.742 Sum_probs=117.8 Q ss_pred CCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 33430012252189999179877999970899889974044435577543352037899999999999869819999997 Q gi|254780238|r 8 IRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVS 87 (129) Q Consensus 8 ~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ik 87 (129) .+++..+.++.||+||++|+|||||||||++||+++|+|+|++||||++|+|||||+++++.++++++++||+.|+|+++ T Consensus 19 ~~~~~~~~i~~GivhI~~t~NNTiitlTD~~Gn~l~~~S~G~~gfkg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~V~ik 98 (140) T 3bbn_K 19 RKSASARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIK 98 (140) T ss_dssp ----CCCCCCCCEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTTSCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEE T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEE T ss_conf 20343421441599999047988999975999999999456255168765878999999999999999709859999997 Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC Q ss_conf 799867888778763693699999638898888688886789 Q gi|254780238|r 88 GLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI 129 (129) Q Consensus 88 G~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi 129 (129) |||+||+++|++|+..||+|.+|+|+||+|||||||||+||| T Consensus 99 G~G~GR~~air~L~~~gl~I~~I~D~TpiphNGcRp~K~RRv 140 (140) T 3bbn_K 99 GPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 140 (140) T ss_dssp SCSTTSSHHHHHHHTTTCEEEEEEECCCCCCSCCCCCCCCCC T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC T ss_conf 898646999999986898899999839999899798999899 No 3 >3ofo_K 30S ribosomal protein S11; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_K* 3iy8_K 2wwl_K 3ofp_K 3i1m_K 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 3kc4_K 3or9_K 3ora_K 2qal_K* 1p6g_K 1p87_K ... Probab=100.00 E-value=1.4e-45 Score=299.55 Aligned_cols=117 Identities=52% Similarity=0.912 Sum_probs=115.0 Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC Q ss_conf 01225218999917987799997089988997404443557754335203789999999999986981999999779986 Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG 92 (129) Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G 92 (129) +++++.|++||++|+||||+||||++||+++|+|+|++||||++|+|||||+++++.++++++++||+.|+|+++|+|+| T Consensus 1 ~~~~~~GivhI~~t~NNT~itlTD~~G~~~~~~S~G~~gfKg~kk~t~~Aa~~~a~~~~~~~~~~Gi~~v~v~~kG~G~g 80 (117) T 3ofo_K 1 RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPG 80 (117) T ss_dssp CCCCEEEEEEEEECSSCEEEEEEETTCCCCEEEETGGGSCCGGGTTSHHHHHHHHHHHHTTTGGGCEEEEEEEEESSSTT T ss_pred CCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC T ss_conf 95430279999915898999998799999999947861318876799379999999999999983996999999799887 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC Q ss_conf 7888778763693699999638898888688886789 Q gi|254780238|r 93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI 129 (129) Q Consensus 93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi 129 (129) |++++++|+..|++|.+|+|+||+|||||||||+||| T Consensus 81 r~~~ik~l~~~gikI~~I~D~T~~phnGcRp~K~RRv 117 (117) T 3ofo_K 81 RESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117 (117) T ss_dssp TTHHHHHHHTTTCCCCCEEECCCCCSSCSCCCCCCCC T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC T ss_conf 7999999975898799999899999899897999899 No 4 >2zkq_k 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_K* Probab=100.00 E-value=6.7e-44 Score=288.18 Aligned_cols=116 Identities=32% Similarity=0.490 Sum_probs=109.9 Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC--- Q ss_conf 01225218999917987799997089988997404443557754-33520378999999999998698199999977--- Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSR-KNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG--- 88 (129) Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~k-k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG--- 88 (129) +..+..||+||++|||||||||||++||+++|+|+|.+||++.+ ++||||||++++.+++++.++||+.++|+++| T Consensus 23 ~~~~~~GivhI~as~NNTiitlTD~~Gn~~~~~SsG~~gfk~~~rk~t~~AA~~aa~~~~~k~~~~Gik~v~v~vrG~g~ 102 (151) T 2zkq_k 23 EGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGG 102 (151) T ss_dssp CCCCSBCCEEEEECSSCEEEEEECTTCCEEEEEESTTSSCCTTTTTTSHHHHHHHHHHHHHHTTTTCCCBCCEEEESSCC T ss_pred CCCEEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCC T ss_conf 58617899999905788499997499999999854400145465567326999999999999998496399999984057 Q ss_pred -----CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC Q ss_conf -----9986788877876369369999963889888868888678 Q gi|254780238|r 89 -----LGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129) Q Consensus 89 -----~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129) ||+||+++||+|+..||+|++|+|+||+|||||||||+|| T Consensus 103 ~~~kgpGpGr~~air~l~~~glkI~~I~D~TpiphNGcRpkK~RR 147 (151) T 2zkq_k 103 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 147 (151) T ss_dssp BTTBCCCTTHHHHHHHHHHHTCCCSCEECCCCCCCSCSCCSCTTC T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC T ss_conf 755789875788998897689389999981989989989899888 No 5 >1s1h_K RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=100.00 E-value=9.4e-42 Score=275.05 Aligned_cols=117 Identities=32% Similarity=0.473 Sum_probs=109.3 Q ss_pred EEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-- Q ss_conf 001225218999917987799997089988997404443557754-33520378999999999998698199999977-- Q gi|254780238|r 12 ERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSR-KNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-- 88 (129) Q Consensus 12 ~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~k-k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-- 88 (129) .+.+.+.|++||++|+|||||||||++||++.|+|+|.++|++.+ ++|+|||+++++.++++++++||+.|+|+++| T Consensus 7 ~~~~~v~GivhI~~t~NNTivtlTD~~Gn~~~~~ssgg~~~k~~rkk~t~~Aa~~aa~~~~~k~~~~Gik~v~V~irG~g 86 (136) T 1s1h_K 7 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCREVGITAVHVKIRATG 86 (136) T ss_dssp -CCCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHHHCHHHHHHHHHHHHHHHHHTTCCEEEEEEESCC T ss_pred CCCCEEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECC T ss_conf 46988999999991479879999759999889996000002357666732599999999999998759529999998236 Q ss_pred ------CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC Q ss_conf ------9986788877876369369999963889888868888678 Q gi|254780238|r 89 ------LGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129) Q Consensus 89 ------~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129) ||+||+++|++|+..||+|.+|+|+||+|||||||||+|| T Consensus 87 ~~r~kgpG~Gr~saik~l~~~glkI~~I~DvTpiphNGcR~~K~RR 132 (136) T 1s1h_K 87 GTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 132 (136) T ss_dssp CCSSSSCCCSHHHHHHHHHHHSSEEEEEEECCCCCSSCSCCCTTCC T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC T ss_conf 7644689873899999998789889999983989989989899888 No 6 >1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Probab=97.47 E-value=0.00075 Score=43.13 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=72.9 Q ss_pred CCEEEEEEECCCCEEEEEE--CCCC-CEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--EECC Q ss_conf 5218999917987799997--0899-889974044435577543--3520378999999999998698199999--9779 Q gi|254780238|r 17 VSGRAHVVSTFNNTRITIT--DPHG-NTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVK--VSGL 89 (129) Q Consensus 17 ~~GiihI~~t~NNTiitlT--d~~G-n~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~--ikG~ 89 (129) .+..+.|+.|.+|+++.+. |..| .+++.+|+-.+..+|-+. ....||+.++..+++++++.|+..+.+- ..|+ T Consensus 31 ~kpRLvVr~SNk~I~aQii~~d~~gd~~l~sasS~el~k~g~k~~~~N~~AAy~~G~llakra~~kgi~~~vfD~G~~~~ 110 (187) T 1vq8_N 31 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSP 110 (187) T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSCC T ss_pred CCCEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99769999838938999998438999899999705065404225874789999999999999985056715772277788 Q ss_pred CC-CH-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC Q ss_conf 98-67-88877876369369999963889888868888 Q gi|254780238|r 90 GA-GR-DSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129) Q Consensus 90 G~-GR-~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129) -. || .+++++....||+| ||+--+-|. T Consensus 111 ~yhgRV~A~akgard~GL~I---------ph~~~~~p~ 139 (187) T 1vq8_N 111 TPGSKVFAIQEGAIDAGLDI---------PHNDDVLAD 139 (187) T ss_dssp CTTCHHHHHHHHHHHTTCBC---------CCCGGGSCC T ss_pred CCCHHHHHHHHHHHHCCCCC---------CCCCCCCCC T ss_conf 64379999999999749578---------898875888 No 7 >1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Probab=97.00 E-value=0.00073 Score=43.19 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=66.2 Q ss_pred EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH-H Q ss_conf 18999917987799997089-98899740444355775433520378999999999998698199999977-998-67-8 Q gi|254780238|r 19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR-D 94 (129) Q Consensus 19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR-~ 94 (129) ..+.|+-|..|+...|.|.. |.+++.+|+=...++....+.-.||..+++.+++++.+.||..|.. =+| +=+ || . T Consensus 29 pRL~V~rSnkhiyaQlIdd~~~~tl~saSt~~k~~k~~~~~n~~aA~~vG~~ia~~a~~~gi~~v~f-DR~g~~yhGrVk 107 (120) T 1ovy_A 29 PRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVF-DRGGYLYHGRVK 107 (120) T ss_dssp CSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCC-CSTTCSSCSSTH T ss_pred CEEEEEEECCEEEEEEEECCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCCCCHHHHH T ss_conf 6699998178279999957889789996365344344679959999999999999999869988998-379997315999 Q ss_pred HHHHHHHHCCCE Q ss_conf 887787636936 Q gi|254780238|r 95 SALRALRAIGFT 106 (129) Q Consensus 95 ~~ik~l~~~glk 106 (129) ++..++...||+ T Consensus 108 a~ad~aRe~Gl~ 119 (120) T 1ovy_A 108 ALADAAREAGLE 119 (120) T ss_dssp HHHHHHHHHHCC T ss_pred HHHHHHHHCCCC T ss_conf 999999980888 No 8 >3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} Probab=96.20 E-value=0.0028 Score=39.59 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=63.4 Q ss_pred EEEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC- Q ss_conf 1899991798779999708-99889974044435577----5433520378999999999998698199999977-998- Q gi|254780238|r 19 GRAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSG----SRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA- 91 (129) Q Consensus 19 GiihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg----~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~- 91 (129) ..+.|+-|.+|....+.|. +|.++..+|+=...++. ...+.-.||..+++.+++++++.||+.| ++=+| +=. T Consensus 66 PRL~VfrSnkhIYAQiIDD~~~~tL~saSTl~K~lk~~~~~~~~~nieaA~~vG~~iA~kak~kgI~~V-vFDRgg~~YH 144 (161) T 3bbo_Q 66 PRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKV-AFDRGGYPYH 144 (161) T ss_dssp CCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCC-CCCCSSSCSS T ss_pred CEEEEEECCCEEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCC T ss_conf 779999708968999997479928999854311355540347613899999999999999998799889-9817997100 Q ss_pred CH-HHHHHHHHHCCCE Q ss_conf 67-8887787636936 Q gi|254780238|r 92 GR-DSALRALRAIGFT 106 (129) Q Consensus 92 GR-~~~ik~l~~~glk 106 (129) || +++.-++...||+ T Consensus 145 GRVkAlAd~aRe~GL~ 160 (161) T 3bbo_Q 145 GRVKALADAAREKGLQ 160 (161) T ss_dssp STTHHHHHHHTTTTCC T ss_pred CHHHHHHHHHHHCCCC T ss_conf 5999999999984888 No 9 >2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Probab=95.17 E-value=0.028 Score=33.48 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=58.1 Q ss_pred CCEEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH Q ss_conf 5218999917987799997089-98899740444355775433520378999999999998698199999977-998-67 Q gi|254780238|r 17 VSGRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR 93 (129) Q Consensus 17 ~~GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR 93 (129) ....+.|+-|.+|....+.|.. |.++..+|+=...+++ ....||+.+++.+++++.+.||+.|. +=+| +=. || T Consensus 22 ~~pRL~V~rSnkhiyaQiIdd~~~~tl~s~St~~k~~k~---~n~~aA~~vG~~ia~ka~~~gI~~vv-FDR~g~~yhGr 97 (112) T 2j01_S 22 GRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG---NKTEVARQVGRALAEKALALGIKQVA-FDRGPYKYHGR 97 (112) T ss_dssp SSCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS---CHHHHHHHHHHHHHHHHHHTSCCCCB-CCCSTTCSSSS T ss_pred CCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE-ECCCCCCCHHH T ss_conf 987599997088369999977998685211041001358---85999999999999999986998899-74799720249 Q ss_pred -HHHHHHHHHCCCE Q ss_conf -8887787636936 Q gi|254780238|r 94 -DSALRALRAIGFT 106 (129) Q Consensus 94 -~~~ik~l~~~glk 106 (129) .++..++...||+ T Consensus 98 vka~ad~~R~~Gl~ 111 (112) T 2j01_S 98 VKALAEGAREGGLE 111 (112) T ss_dssp CCCCSSCTTCC--- T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999983899 No 10 >2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Probab=94.80 E-value=0.014 Score=35.33 Aligned_cols=84 Identities=24% Similarity=0.209 Sum_probs=58.9 Q ss_pred CEEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CHH Q ss_conf 218999917987799997089-98899740444355775433520378999999999998698199999977-998-678 Q gi|254780238|r 18 SGRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GRD 94 (129) Q Consensus 18 ~GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR~ 94 (129) ...+.|+-|.+|....+.|.. |.+|+.+|+-...+ .....+|..+++.+++++++.||+.| ++=+| +=. ||- T Consensus 26 rpRL~V~rSnkhiyAQiIDd~~~~tl~saSt~~~~~----~~~~~~a~~vG~~ia~~~~~~gI~~v-vFDR~g~~YHGrv 100 (114) T 2zjr_L 26 RLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKS----GNKTDTAAAVGKALAAAAAEKGIKQV-VFDRGSYKYHGRV 100 (114) T ss_dssp SEEECCCTTSSCCCCCEEETTTTEECCCCCSCSCCT----TCSSSSHHHHHHHHHHHHHTTCCCCC-EECCCSSCSCSHH T ss_pred CCEEEEEECCCEEEEEEEECCCCCEEEEEECCCHHC----CCCHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCCHH T ss_conf 877999973880899999789997999961020102----89678999999997636888698289-9868998410299 Q ss_pred -HHHHHHHHCCCE Q ss_conf -887787636936 Q gi|254780238|r 95 -SALRALRAIGFT 106 (129) Q Consensus 95 -~~ik~l~~~glk 106 (129) ++.-++...||+ T Consensus 101 kalAd~aR~~Gl~ 113 (114) T 2zjr_L 101 KALADAAREGGLD 113 (114) T ss_dssp HHHHHHHHHHC-- T ss_pred HHHHHHHHHCCCC T ss_conf 9999999984898 No 11 >3ofq_O 50S ribosomal protein L18; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_O 2wwq_O 3ofr_O* 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* ... Probab=93.49 E-value=0.0031 Score=39.31 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=61.0 Q ss_pred EEEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH Q ss_conf 1899991798779999708-99889974044435577543--3520378999999999998698199999977-998-67 Q gi|254780238|r 19 GRAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR 93 (129) Q Consensus 19 GiihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR 93 (129) .-+.|+-|.+|....+.|. .|.+|..+|+=...++...+ ..-.||..+++.+++++++.||..|.. =+| +=. || T Consensus 23 pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~v~f-Dr~g~~yhGr 101 (116) T 3ofq_O 23 TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSF-DRSGFQYHGR 101 (116) T ss_dssp CEECCCEETTEECCBEECTTSSCCCCBCCSSSHHHHTTCSCSSSTTHHHHTHHHHHHHHHHHTCCCCCC-CCTTSCTTST T ss_pred CEEEEEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCCCCHHH T ss_conf 759999708818999997799968999873244443212678777899999999999999869999997-6898773269 Q ss_pred -HHHHHHHHHCCCE Q ss_conf -8887787636936 Q gi|254780238|r 94 -DSALRALRAIGFT 106 (129) Q Consensus 94 -~~~ik~l~~~glk 106 (129) .++.-++...||+ T Consensus 102 vkalad~~Re~Gl~ 115 (116) T 3ofq_O 102 VQALADAAREAGLQ 115 (116) T ss_dssp TTTTSSTTTSSSCC T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999982888 No 12 >3jyw_E 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E Probab=81.36 E-value=0.76 Score=24.73 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=70.3 Q ss_pred EEEECCCEEEEEEECCCCEEEEEECC--CCC-EEEEECCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCE--- Q ss_conf 00122521899991798779999708--998-899740444---3557754335203789999999999986-9819--- Q gi|254780238|r 12 ERKNIVSGRAHVVSTFNNTRITITDP--HGN-TIAWSSPKV---VGFSGSRKNSPFAAQVATDDCSAKAQNH-GMSS--- 81 (129) Q Consensus 12 ~~~~i~~GiihI~~t~NNTiitlTd~--~Gn-~i~~~S~G~---~gfkg~kk~t~~Aa~~~a~~~~~~~~~~-gi~~--- 81 (129) .+-.-++..+-|..|..|+++.++.. .|+ +++.+.+-- .|+++...+.| ||+.++-.++.++... |+.. T Consensus 32 ~ky~spk~R~VVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~g~~N~~-AaYlTGlL~arr~l~k~gl~~~~~ 110 (237) T 3jyw_E 32 AKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWA-AAYATGLLIARRTLQRLGLDETYK 110 (237) T ss_dssp SCBCSSSSSEECCCCSSCCEEECCCBCSSSBCCSSEEEGGGSTTTSCCSCSCBSH-HHHHHHHHHHHCBSCSSSCSSBCS T ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEECCCCEEEEEECHHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCHHHHC T ss_conf 5458986369999867947999998507899999984165686637568987316-999988999999988617245426 Q ss_pred -------------------------EEEEEECCCCC--HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC Q ss_conf -------------------------99999779986--788877876369369999963889888868888 Q gi|254780238|r 82 -------------------------LEVKVSGLGAG--RDSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129) Q Consensus 82 -------------------------v~v~ikG~G~G--R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129) ++|=+.-+-.| --+++|+....||. |||+-.|-|- T Consensus 111 g~~e~~g~~~~~e~~~~~~~~f~aiLDiGL~r~t~G~RVfaalKGavD~Gl~---------IPhse~~fP~ 172 (237) T 3jyw_E 111 GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLY---------VPHSENRFPG 172 (237) T ss_dssp SCSSSSSCCCCCSCCCSSCCCCSCCEECCSSCCCTTCHHHHHHHHHHTTSSC---------CCCCSSSCCC T ss_pred CCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCC---------CCCCCCCCCC T ss_conf 7521477510222224688871577414654576562046743301146733---------5788873788 No 13 >2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=81.27 E-value=3 Score=21.10 Aligned_cols=100 Identities=21% Similarity=0.145 Sum_probs=68.5 Q ss_pred ECCCEEEEEEECCCCEEEEEECC--CCC-EEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCC------- Q ss_conf 22521899991798779999708--998-8997404---443557754335203789999999999986-981------- Q gi|254780238|r 15 NIVSGRAHVVSTFNNTRITITDP--HGN-TIAWSSP---KVVGFSGSRKNSPFAAQVATDDCSAKAQNH-GMS------- 80 (129) Q Consensus 15 ~i~~GiihI~~t~NNTiitlTd~--~Gn-~i~~~S~---G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~-gi~------- 80 (129) .-++..+-|..|..|+++.++.. .|+ +++.+++ ...|.++...+.| ||+.++-.++.++... |+. T Consensus 45 ~spK~RlVVR~TNk~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~-AAYlTGlL~arR~L~k~~ld~~y~g~~ 123 (297) T 2zkr_n 45 NTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYA-AAYCTGLLLARRLLNRFGMDKIYEGQV 123 (297) T ss_dssp SCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHH-HHHHHHHHHHHHHHCCCSCCCCCSSCC T ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEEHHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCHHHHCCCC T ss_conf 7986059999837957999988617898999986421376659889987448-999999999999987505133325750 Q ss_pred -----------------EEEEEEE-C-----CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC Q ss_conf -----------------9999997-7-----998678887787636936999996388988886888 Q gi|254780238|r 81 -----------------SLEVKVS-G-----LGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPR 124 (129) Q Consensus 81 -----------------~v~v~ik-G-----~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~ 124 (129) ....++. | .|.---+++++....||. |||+-.|-| T Consensus 124 e~~g~~~~ve~~~~~~g~f~aiLDiGL~rtt~G~RVFaalKGavDgGl~---------IPhse~~fP 181 (297) T 2zkr_n 124 EVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLS---------IPHSTKRFP 181 (297) T ss_dssp SSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCB---------CCCCGGGSC T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCC---------CCCCCCCCC T ss_conf 1356402334334678862699713644466686689875112357746---------889876588 No 14 >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Probab=70.10 E-value=5.1 Score=19.69 Aligned_cols=61 Identities=11% Similarity=0.288 Sum_probs=40.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 75433520378999999999998698199999977998678887787636936999996388 Q gi|254780238|r 54 GSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTM 115 (129) Q Consensus 54 g~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ 115 (129) +....|.+....+.+.+.+. ....++...|.+.|||.=-..+.+-|...|.+|+-|.|.+. T Consensus 195 ~~~~aTg~Gv~~~~~~~~~~-~~~~l~g~~vaIQG~GnVG~~~a~~L~~~GakvvavsD~~G 255 (424) T 3k92_A 195 GRETATAQGVTICIEEAVKK-KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANG 255 (424) T ss_dssp TTTTHHHHHHHHHHHHHHHH-TTCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSC T ss_pred CCHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 85677206788999998874-59986887799971572689999999876997999986997 No 15 >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Probab=69.77 E-value=5 Score=19.72 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=34.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEEECCCC-CHHHHHHHH-HHCCCEEEEEEECCC Q ss_conf 43352037899999999999869---8199999977998-678887787-636936999996388 Q gi|254780238|r 56 RKNSPFAAQVATDDCSAKAQNHG---MSSLEVKVSGLGA-GRDSALRAL-RAIGFTIVSICDVTM 115 (129) Q Consensus 56 kk~t~~Aa~~~a~~~~~~~~~~g---i~~v~v~ikG~G~-GR~~~ik~l-~~~glkI~~I~D~T~ 115 (129) ...|.+....+++.++ ..+| ++...|.+.|||. |...+ +-| +..+.+++.+.|... T Consensus 187 ~~aTg~Gv~~~~~~a~---~~~g~~~l~g~~VaIQG~GnVG~~~a-~~L~~~~g~~vVavsD~~G 247 (419) T 1gtm_A 187 IEATARGASYTIREAA---KVLGWDTLKGKTIAIQGYGNAGYYLA-KIMSEDFGMKVVAVSDSKG 247 (419) T ss_dssp TTHHHHHHHHHHHHHH---HHTTCSCSTTCEEEEECCSHHHHHHH-HHHHHTTCCEEEEEECSSC T ss_pred HHHHHHHHHHHHHHHH---HHCCCCCCCCCEEEEECCCHHHHHHH-HHHHHHCCCCEEEECCCCC T ss_conf 5877689999999999---98199865688899608867999999-9998733867999537873 No 16 >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A Probab=67.21 E-value=6.2 Score=19.16 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=42.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 7543352037899999999999869819999997799867888778763693699999638898 Q gi|254780238|r 54 GSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIA 117 (129) Q Consensus 54 g~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip 117 (129) +....|.|....+++.+++. ....++...|.+.|||.=-..+.+-|...|.+|+.+.|..-.- T Consensus 204 ~r~~ATG~Gv~~~~~~~~~~-~~~~l~g~~vaIQGfGnVG~~~A~~L~e~GakvvavsD~~G~i 266 (449) T 1bgv_A 204 VRPEATGYGSVYYVEAVMKH-ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYI 266 (449) T ss_dssp TTTTHHHHHHHHHHHHHHHH-TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEE T ss_pred CCHHHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCEE T ss_conf 85233336789999999985-4998689889997668289999999986699259985588359 No 17 >2i5p_O GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; rossmann fold, APO form, dimer, oxidoreductase; HET: GLC; 2.30A {Kluyveromyces marxianus} Probab=62.72 E-value=5 Score=19.72 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=21.0 Q ss_pred CCCCEEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEE Q ss_conf 698199999977998-678887787636936999996 Q gi|254780238|r 77 HGMSSLEVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129) Q Consensus 77 ~gi~~v~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129) .|+.-+.|-|.|||. ||..+--.+....++|+.|-| T Consensus 10 ~~~~MikIgINGFGRIGR~v~R~~l~~~~ievvaINd 46 (342) T 2i5p_O 10 HGIQMVSIAINGFGRIGRLVLRIALERKNIDVVAIND 46 (342) T ss_dssp ----CEEEEEECCSHHHHHHHHHHTTCTTEEEEEEEC T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 6441889999788679999999996589968999778 No 18 >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Probab=58.42 E-value=5.7 Score=19.37 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=39.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 43352037899999999999869819999997799867888778763693699999638898 Q gi|254780238|r 56 RKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIA 117 (129) Q Consensus 56 kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip 117 (129) ...|.|.....++.+.+.. ...++...|.+.|+|.=-..+.+-|...|.+|+.|.|....- T Consensus 228 ~~ATG~Gv~~~~~~~l~~~-~~~l~gk~vaIqGfGnVG~~aa~~L~e~GakVVavSD~~G~i 288 (470) T 2bma_A 228 VEATGYGLVYFVLEVLKSL-NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYV 288 (470) T ss_dssp TTHHHHHHHHHHHHHHHTT-TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEE T ss_pred CEEEEEEEHHHHHHHHHHC-CCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEE T ss_conf 7068986389999999855-468567889997777368999999997497699998688738 No 19 >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, protein structure initiative, GAPDH, oxidoreductase; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Probab=57.51 E-value=7.7 Score=18.58 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=12.0 Q ss_pred CEEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEE Q ss_conf 199999977998-678887787636936999996 Q gi|254780238|r 80 SSLEVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129) Q Consensus 80 ~~v~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129) ....|-|.|||. ||..+-..|...+++|..|-| T Consensus 10 ~~~kIgINGFGRIGR~vlR~~l~~~~~eivaINd 43 (345) T 2b4r_O 10 AATKLGINGFGRIGRLVFRAAFGRKDIEVVAIND 43 (345) T ss_dssp -CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC T ss_pred EEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 5348999678678999999985089948999889 No 20 >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Probab=55.43 E-value=11 Score=17.67 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=5.0 Q ss_pred EEEEEECCCC Q ss_conf 9999963889 Q gi|254780238|r 107 IVSICDVTMI 116 (129) Q Consensus 107 I~~I~D~T~i 116 (129) ++.|+..|.- T Consensus 174 ~tTiH~~t~~ 183 (334) T 3cmc_O 174 MTTVHSYTND 183 (334) T ss_dssp EEEEEECCTT T ss_pred EEEECCCCCC T ss_conf 6311267787 No 21 >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Probab=52.53 E-value=12 Score=17.31 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=32.1 Q ss_pred HHHHHHHHHHCC--CCEEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 999999999869--8199999977998-678887787636936999996388 Q gi|254780238|r 67 TDDCSAKAQNHG--MSSLEVKVSGLGA-GRDSALRALRAIGFTIVSICDVTM 115 (129) Q Consensus 67 a~~~~~~~~~~g--i~~v~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D~T~ 115 (129) +..+...+..+| ++...|.+.|||. |...+..-++..|-+|+.|.|... T Consensus 193 ~~~a~~~~~~~~~~l~g~~vaIQG~GnVG~~~a~~L~~~~Ga~vVavsD~~G 244 (415) T 2tmg_A 193 KVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRG 244 (415) T ss_dssp HHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSC T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9999999986799857887999857738899998777756985999706777 No 22 >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Probab=50.25 E-value=13 Score=17.09 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=34.6 Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCC Q ss_conf 86981999999779986788877876369369999963889888 Q gi|254780238|r 76 NHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHN 119 (129) Q Consensus 76 ~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~n 119 (129) ..++....|.+.|||+=-..+-+-|...|.+|+.|.|....-|| T Consensus 205 ~~~l~g~~vaIQGfGnVG~~~A~~L~~~GakvvavsD~~G~i~~ 248 (421) T 1v9l_A 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYR 248 (421) T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEEC T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCEEC T ss_conf 69967887999507840799999886358689999747874225 No 23 >3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Probab=47.96 E-value=14 Score=16.95 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=7.3 Q ss_pred HHHHHHHHHHCCCCEEEE Q ss_conf 999999999869819999 Q gi|254780238|r 67 TDDCSAKAQNHGMSSLEV 84 (129) Q Consensus 67 a~~~~~~~~~~gi~~v~v 84 (129) ...+.+.+.++|.+.+.+ T Consensus 106 ~k~~i~~a~~lGa~~v~~ 123 (287) T 3kws_A 106 MKEIIAAAGELGSTGVII 123 (287) T ss_dssp HHHHHHHHHHTTCSEEEE T ss_pred HHHHHHHHHHHCCCCEEE T ss_conf 999999999959980342 No 24 >2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B 2e0y_B 2z8i_B* 2z8j_B* 2z8k_B* Probab=47.28 E-value=15 Score=16.88 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=12.2 Q ss_pred EEEEEECCCCCEEEEECC Q ss_conf 799997089988997404 Q gi|254780238|r 30 TRITITDPHGNTIAWSSP 47 (129) Q Consensus 30 TiitlTd~~Gn~i~~~S~ 47 (129) ||+++.|..||.++.+++ T Consensus 2 th~svvD~~GnaVs~T~S 19 (190) T 2dg5_B 2 THYSVVDKDGNAVAVTYT 19 (190) T ss_dssp EEEEEECTTSCEEEEEEE T ss_pred EEEEEECCCCCEEEEECC T ss_conf 599999389999999744 No 25 >2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_B* Probab=44.53 E-value=17 Score=16.54 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=13.4 Q ss_pred EEEEEECCCCCEEEEECC Q ss_conf 799997089988997404 Q gi|254780238|r 30 TRITITDPHGNTIAWSSP 47 (129) Q Consensus 30 TiitlTd~~Gn~i~~~S~ 47 (129) |++++.|.+||.++.+++ T Consensus 2 th~svvD~~GnaVs~T~S 19 (193) T 2v36_B 2 THFTVADRWGNVVSYTTT 19 (193) T ss_dssp EEEEEEETTSCEEEEEEE T ss_pred EEEEEECCCCCEEEEECC T ss_conf 599999389999999833 No 26 >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Probab=40.11 E-value=19 Score=16.12 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=41.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHH-------HCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 543352037899999999999-------8698199999977998678887787636936999996388988 Q gi|254780238|r 55 SRKNSPFAAQVATDDCSAKAQ-------NHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAH 118 (129) Q Consensus 55 ~kk~t~~Aa~~~a~~~~~~~~-------~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~ 118 (129) ....|.+....+.+.+.+... +.++....|.+.|||.--..+.+-|...|-+|+.|.|.+-.=+ T Consensus 211 r~~ATg~Gv~~~~~~~~~~~~~~~~~g~~~~l~g~tvaIQGfGnVG~~~A~~L~~~GakvVavsD~~G~i~ 281 (501) T 3mw9_A 211 RISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIW 281 (501) T ss_dssp TTTHHHHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCEEE T ss_conf 73210047899999999986665440567444685799968875799999999970256536753786598 No 27 >2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} SCOP: d.153.1.6 Probab=38.49 E-value=21 Score=15.97 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.6 Q ss_pred CCEEEEEECCCCCEEEEECCC Q ss_conf 877999970899889974044 Q gi|254780238|r 28 NNTRITITDPHGNTIAWSSPK 48 (129) Q Consensus 28 NNTiitlTd~~Gn~i~~~S~G 48 (129) .-|++++.|.+||.++++++- T Consensus 330 ~Tth~svvD~~GnaVS~T~S~ 350 (516) T 2i3o_A 330 DTTYFSISDSEGRSVSIIQSN 350 (516) T ss_dssp EEEEEEEEETTSCEEEEEEEE T ss_pred CCEEEEEECCCCCEEEEEECC T ss_conf 977999987999689997025 No 28 >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics, oxidoreductase; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* Probab=37.86 E-value=21 Score=15.91 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=13.4 Q ss_pred EEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEE Q ss_conf 99999977998-678887787636936999996 Q gi|254780238|r 81 SLEVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129) Q Consensus 81 ~v~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129) .+.|=|.|||. ||..+-..+....++|+.|-| T Consensus 17 ~~~IgINGFGRIGR~vlR~~l~~~~i~ivaINd 49 (354) T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAIND 49 (354) T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 100899787589999999997589968999789 No 29 >2qmc_B GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_B* 2nqo_B* 3fnm_B* Probab=33.38 E-value=25 Score=15.47 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=13.4 Q ss_pred EEEEEECCCCCEEEEECC Q ss_conf 799997089988997404 Q gi|254780238|r 30 TRITITDPHGNTIAWSSP 47 (129) Q Consensus 30 TiitlTd~~Gn~i~~~S~ 47 (129) ||+++.|..||.++.+++ T Consensus 2 TH~sVvD~~GnaVS~T~S 19 (188) T 2qmc_B 2 THYSVADRWGNAVSVTYT 19 (188) T ss_dssp EEEEEEETTSCEEEEEEE T ss_pred CEEEEECCCCCEEEEECC T ss_conf 789998599999999833 No 30 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=33.30 E-value=25 Score=15.46 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=44.8 Q ss_pred HHHHHHHHHHHCCCCEEEEEE-ECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC Q ss_conf 999999999986981999999-7799867888778763693699999638898888688886 Q gi|254780238|r 66 ATDDCSAKAQNHGMSSLEVKV-SGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKR 126 (129) Q Consensus 66 ~a~~~~~~~~~~gi~~v~v~i-kG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~ 126 (129) +...+++.++++|-+.|.++. .|.-.+ .++.-|..+++.=+.++|.-|.|.+....+|- T Consensus 287 Tl~~aa~~Lk~~GA~~V~~~~THgvfs~--~A~~~l~~s~i~~Iv~TnTIp~~~~~~~~~Ki 346 (379) T 2ji4_A 287 SFLAAAETLKERGAYKIFVMATHGLLSS--DAPRRIEESAIDEVVVTNTIPHEVQKLQCPKI 346 (379) T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECCCT--THHHHHHHSSCCEEEEESSSCCHHHHHTCTTE T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCC--HHHHHHHHCCCCEEEECCCCCCCHHHCCCCCC T ss_conf 6999999999769983799997976881--69999972899989986886787356258981 No 31 >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* Probab=32.34 E-value=17 Score=16.42 Aligned_cols=44 Identities=11% Similarity=-0.037 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECC--CCC-----HHHHHHHHHHCCCEEE Q ss_conf 89999999999986981999999779--986-----7888778763693699 Q gi|254780238|r 64 QVATDDCSAKAQNHGMSSLEVKVSGL--GAG-----RDSALRALRAIGFTIV 108 (129) Q Consensus 64 ~~~a~~~~~~~~~~gi~~v~v~ikG~--G~G-----R~~~ik~l~~~glkI~ 108 (129) -.++-.++..+..+|. .|.++.++. -++ ++.+.+.|...|+++. T Consensus 178 G~ig~E~A~~l~~~G~-~Vtlve~~~~ll~~~d~~~~~~l~~~l~~~GV~i~ 228 (464) T 2eq6_A 178 GAVGLELGQVYRRLGA-EVTLIEYMPEILPQGDPETAALLRRALEKEGIRVR 228 (464) T ss_dssp SHHHHHHHHHHHHTTC-EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEE T ss_pred CHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 8999999999997699-19999748844311589999999999986477301 No 32 >3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional center of excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S* Probab=32.12 E-value=26 Score=15.34 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.5 Q ss_pred HHHHHHHHHHCCCEEEE Q ss_conf 78887787636936999 Q gi|254780238|r 93 RDSALRALRAIGFTIVS 109 (129) Q Consensus 93 R~~~ik~l~~~glkI~~ 109 (129) -+.+++.|...|.+|.. T Consensus 123 ~~~~~~~L~~~Gh~v~~ 139 (177) T 3g9k_S 123 SSEVKNELSRKGLNVKK 139 (177) T ss_dssp CHHHHHHHHTTTCEEEE T ss_pred CHHHHHHHHHCCCEEEE T ss_conf 79899999986983687 No 33 >2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1 Probab=30.13 E-value=28 Score=15.13 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 3789999999999986981999999779 Q gi|254780238|r 62 AAQVATDDCSAKAQNHGMSSLEVKVSGL 89 (129) Q Consensus 62 Aa~~~a~~~~~~~~~~gi~~v~v~ikG~ 89 (129) -|...++.++....++||+.+.|.+.|- T Consensus 61 qA~~~~~ii~r~~~~LGY~DINV~~~G~ 88 (96) T 2jvf_A 61 QAKELLELIARLLQKLGYKDINVRVNGT 88 (96) T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 8999999999999983976318998585 No 34 >1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1 Probab=30.02 E-value=28 Score=15.12 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 3789999999999986981999999779 Q gi|254780238|r 62 AAQVATDDCSAKAQNHGMSSLEVKVSGL 89 (129) Q Consensus 62 Aa~~~a~~~~~~~~~~gi~~v~v~ikG~ 89 (129) -|...++.+++...++||+.+.|.+.|- T Consensus 59 qA~~~~~ii~r~~~~LGY~DINV~~~G~ 86 (106) T 1qys_A 59 EAEKFAAILIKVFAELGYNDINVTFDGD 86 (106) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 8999999999999983976318998581 No 35 >1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Probab=27.93 E-value=31 Score=14.90 Aligned_cols=59 Identities=8% Similarity=-0.021 Sum_probs=26.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC---HHHHHHHHHHCCCEEEEEEECCC Q ss_conf 335203789999999999986981999999779986---78887787636936999996388 Q gi|254780238|r 57 KNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG---RDSALRALRAIGFTIVSICDVTM 115 (129) Q Consensus 57 k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G---R~~~ik~l~~~glkI~~I~D~T~ 115 (129) .-|+..+..+++.++..+.+.+-..|.|=...--.+ .++++.+|...|+++..+...+| T Consensus 26 ~lt~~~~~~~~~a~~~~l~~~~~~~VvVG~DtR~ss~~l~~a~~~gl~a~G~~V~~~~G~~p 87 (464) T 1tuo_A 26 EFTFATLHRLAEAYGRHLLERGGGLVVVGHDTRFLADAFARALSGHLAGMGLKVVLLKGPVP 87 (464) T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSTTHHHHHHHHHHHHHHHTCEEEEESSSCC T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 65999999999999999987295989999699644999999999999976997998789777 No 36 >3h9e_A Glyceraldehyde-3-phosphate dehydrogenase, testis- specific; oxidoreductase, structural genomics, structural genomics consortium, SGC, cytoplasm; HET: NAD; 1.72A {Homo sapiens} PDB: 2vyn_D* 2vyv_D* Probab=24.81 E-value=35 Score=14.55 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=5.4 Q ss_pred HCCCCEEEEEEECCCC Q ss_conf 8698199999977998 Q gi|254780238|r 76 NHGMSSLEVKVSGLGA 91 (129) Q Consensus 76 ~~gi~~v~v~ikG~G~ 91 (129) +.|.+.|.| ..|.+ T Consensus 116 ~~GakkVii--SAP~~ 129 (346) T 3h9e_A 116 SAGAQRVVI--SAPSP 129 (346) T ss_dssp HTTCSEEEE--SSCCS T ss_pred HCCCCEEEE--CCCCC T ss_conf 679967998--66999 No 37 >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Probab=23.50 E-value=37 Score=14.39 Aligned_cols=33 Identities=15% Similarity=0.484 Sum_probs=21.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEE Q ss_conf 698199999977998678887787636936999 Q gi|254780238|r 77 HGMSSLEVKVSGLGAGRDSALRALRAIGFTIVS 109 (129) Q Consensus 77 ~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~ 109 (129) ++|+.+.-..-|+|.|..++.+.|...|+.+.. T Consensus 1 m~m~~IIgItG~igSGKStva~~l~~~G~~vid 33 (218) T 1vht_A 1 MSLRYIVALTGGIGSGKSTVANAFADLGINVID 33 (218) T ss_dssp -CCCEEEEEECCTTSCHHHHHHHHHHTTCEEEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE T ss_conf 997769998798878799999999987991998 No 38 >2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Probab=23.19 E-value=38 Score=14.36 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=11.0 Q ss_pred HHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCE Q ss_conf 9998698199999977998678887787636936 Q gi|254780238|r 73 KAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFT 106 (129) Q Consensus 73 ~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glk 106 (129) .++.+|++.|+++ +.. ..++++|...|++ T Consensus 21 llks~gi~~VRlY--~~d---~~vL~A~~~~gi~ 49 (312) T 2cyg_A 21 LYKSNNIARMRLY--DPN---QAALQALRNSNIQ 49 (312) T ss_dssp HHHHTTCCEEEES--SCC---HHHHHHHTTSCCE T ss_pred HHHHCCCCEEEEE--CCC---HHHHHHHHHCCCE T ss_conf 9997798989961--899---7999976746987 No 39 >3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glycosidase, hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} PDB: 3f55_A* Probab=22.25 E-value=39 Score=14.24 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=4.0 Q ss_pred HHHHHHHCCCE Q ss_conf 87787636936 Q gi|254780238|r 96 ALRALRAIGFT 106 (129) Q Consensus 96 ~ik~l~~~glk 106 (129) ++++|...|++ T Consensus 40 vL~A~~~~gi~ 50 (316) T 3em5_A 40 VLEALRGSNIE 50 (316) T ss_dssp HHHHHTTCCCE T ss_pred HHHHHHHCCCE T ss_conf 99998865997 No 40 >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Probab=21.05 E-value=42 Score=14.09 Aligned_cols=38 Identities=8% Similarity=0.227 Sum_probs=18.2 Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEE Q ss_conf 99999869819999997799867888778763693699 Q gi|254780238|r 71 SAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIV 108 (129) Q Consensus 71 ~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~ 108 (129) ++.+.+.||+.|.+-...|.|-...-++.|..+|++|. T Consensus 99 ~~~ii~~gi~~Vv~~~~Dpnp~~g~g~~~L~~aGI~V~ 136 (360) T 2hxv_A 99 TDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIEVI 136 (360) T ss_dssp HHHHHHHTCCEEEEEECCCCGGGCCHHHHHHTTTCEEE T ss_pred HHHHHHHCCCEEEEEEECCCCCCCCCEEHHHCCCCEEE T ss_conf 88999728998999714376235775201104683899 No 41 >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} Probab=21.01 E-value=42 Score=14.09 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=11.5 Q ss_pred CEEEEEEECCC--CC------HHHHHHHHHHCCCE Q ss_conf 19999997799--86------78887787636936 Q gi|254780238|r 80 SSLEVKVSGLG--AG------RDSALRALRAIGFT 106 (129) Q Consensus 80 ~~v~v~ikG~G--~G------R~~~ik~l~~~glk 106 (129) ..+.+..++.- ++ ...+.+.|...|+. T Consensus 184 ~~vtl~~~~~~~l~~~~~~~~~~~~~~~l~~~gv~ 218 (472) T 3iwa_A 184 IDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVV 218 (472) T ss_dssp CEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCE T ss_pred CEEEEEEECCHHCCCCCCCCHHHHHHCCCCCCEEE T ss_conf 26886430000034333110234321000011489 No 42 >2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} SCOP: d.153.1.6 Probab=20.55 E-value=43 Score=14.03 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=18.8 Q ss_pred CCCCEEEEEECCCCCEEEEECCC Q ss_conf 79877999970899889974044 Q gi|254780238|r 26 TFNNTRITITDPHGNTIAWSSPK 48 (129) Q Consensus 26 t~NNTiitlTd~~Gn~i~~~S~G 48 (129) +...|++++.|..||.++.+++- T Consensus 355 ~~~Tth~svvD~~GnaVs~T~S~ 377 (547) T 2nlz_A 355 RGGTVYLATADGDGNMVSFIQSN 377 (547) T ss_dssp ---CEEEEEEETTSCEEEEEEEC T ss_pred CCCCEEEEEECCCCCEEEEECCC T ss_conf 78846899984899889986146 No 43 >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Probab=20.51 E-value=43 Score=14.02 Aligned_cols=37 Identities=32% Similarity=0.619 Sum_probs=24.3 Q ss_pred CCCCEEEEEEECCCC-CHHHHHHHHHHCCCEEEEEEECC Q ss_conf 698199999977998-67888778763693699999638 Q gi|254780238|r 77 HGMSSLEVKVSGLGA-GRDSALRALRAIGFTIVSICDVT 114 (129) Q Consensus 77 ~gi~~v~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D~T 114 (129) .|.-.+.|-|.|||. || .++|.+...+++|+.|-|.. T Consensus 17 ~~p~~ikIgINGFGRIGR-~vlR~~~~~~i~iVaINd~~ 54 (356) T 3hja_A 17 QGPGSMKLAINGFGRIGR-NVFKIAFERGIDIVAINDLT 54 (356) T ss_dssp -----CEEEEECCSHHHH-HHHHHHHHTTCEEEEEECSS T ss_pred CCCCCEEEEEECCCHHHH-HHHHHHHHCCCEEEEECCCC T ss_conf 599847999988867999-99999985899899981799 No 44 >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Probab=20.16 E-value=43 Score=13.98 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=7.9 Q ss_pred HHHHHCCCCEEEEEEECCCC Q ss_conf 99998698199999977998 Q gi|254780238|r 72 AKAQNHGMSSLEVKVSGLGA 91 (129) Q Consensus 72 ~~~~~~gi~~v~v~ikG~G~ 91 (129) +.-.+.|.+.|.| ..|.+ T Consensus 104 ~~Hl~~GakkVii--SAP~k 121 (331) T 2g82_O 104 KAHLEGGAKKVII--TAPAK 121 (331) T ss_dssp THHHHTTCSEEEE--SSCCB T ss_pred HHHHHCCCCEEEE--CCCCC T ss_conf 9999739998999--68876 No 45 >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3k2b_A* 2pkq_O* Probab=20.08 E-value=44 Score=13.97 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.7 Q ss_pred HHCCCCEEEEEEECCC Q ss_conf 9869819999997799 Q gi|254780238|r 75 QNHGMSSLEVKVSGLG 90 (129) Q Consensus 75 ~~~gi~~v~v~ikG~G 90 (129) .+.|.+.|.| ..|. T Consensus 112 l~~gakkVii--SAP~ 125 (337) T 1rm4_O 112 LQAGAKKVLI--TAPG 125 (337) T ss_dssp HHTTCSEEEE--SSCC T ss_pred HHCCCCEEEE--CCCC T ss_conf 8779998999--9998 Done!