HHSEARCH alignment of GI: 254780238 and SCOP domain: d2qalk1

Alignment
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=305.18  Aligned_cols=117  Identities=52%  Similarity=0.912  Sum_probs=115.1

Q ss_pred             EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             01225218999917987799997089988997404443557754335203789999999999986981999999779986
Q gi|254780238|r   13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG   92 (129)
Q Consensus        13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G   92 (129)
                      +++++.|++||++|+|||||||||++||++.|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+|
T Consensus         1 k~~~~~Gi~hI~~t~NNTiitlTD~~G~~~~~~S~G~~gfkg~~K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~G   80 (117)
T d2qalk1           1 RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPG   80 (117)
T ss_dssp             CCCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECCSTT
T ss_pred             CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             95144259999925798999998799999999863235546643333479999999999999983996899999679996


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             7888778763693699999638898888688886789
Q gi|254780238|r   93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI  129 (129)
Q Consensus        93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi  129 (129)
                      |++++++|+..||+|.+|+|+||+|||||||||+|||
T Consensus        81 R~~air~l~~~gl~I~~I~D~TpiphnGcRp~K~RRv  117 (117)
T d2qalk1          81 RESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV  117 (117)
T ss_dssp             TTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             4999999975898899989899999899898999899


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]