Query         gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    107 out of 1080
Neff          5.7 
Searched_HMMs 13730
Date          Tue May 24 01:16:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780238.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2qalk1 c.55.4.1 (K:12-128) Ri 100.0       0       0  305.2  13.4  117   13-129     1-117 (117)
  2 d2uubk1 c.55.4.1 (K:11-129) Ri 100.0       0       0  302.0  15.0  116   13-128     1-116 (119)
  3 d1vqon1 c.55.4.1 (N:1-186) Rib  97.3  0.0011 7.7E-08   40.8   8.9  100   17-125    30-138 (186)
  4 d1ovya_ c.55.4.1 (A:) Ribosoma  97.0 0.00045 3.3E-08   43.0   4.9   86   20-106     7-96  (97)
  5 d2gycm1 c.55.4.1 (M:3-115) Rib  96.5  0.0033 2.4E-07   37.7   6.3   86   19-105    22-113 (113)
  6 d2j01s1 c.55.4.1 (S:23-108) Ri  95.4   0.011 7.7E-07   34.6   4.6   60   20-82      3-63  (86)
  7 d2zjrl1 c.55.4.1 (L:8-111) Rib  89.6   0.075 5.4E-06   29.4   2.0   73   19-96     20-95  (104)
  8 d1gtma1 c.2.1.7 (A:181-419) Gl  82.8    0.75 5.5E-05   23.3   4.2   63   53-115     4-67  (239)
  9 d1bgva1 c.2.1.7 (A:195-449) Gl  81.9    0.87 6.3E-05   22.9   4.2   63   53-116     9-71  (255)
 10 d1v9la1 c.2.1.7 (A:180-421) Gl  81.1    0.98 7.2E-05   22.6   4.3   63   52-115     3-65  (242)
 11 d1b26a1 c.2.1.7 (A:179-412) Gl  77.8    0.74 5.4E-05   23.3   2.8   65   53-118     4-69  (234)
 12 d1hwxa1 c.2.1.7 (A:209-501) Gl  61.1     2.4 0.00017   20.2   2.4   66   54-119     2-74  (293)
 13 d1gado1 c.2.1.3 (O:0-148,O:313  57.5     5.1 0.00037   18.2   3.6   30   83-112     3-33  (166)
 14 d1u8fo1 c.2.1.3 (O:3-151,O:316  56.9       5 0.00036   18.3   3.4   30   83-112     3-33  (169)
 15 d2czca2 c.2.1.3 (A:1-139,A:302  47.6     8.5 0.00062   16.8   4.2   31   83-114     4-36  (172)
 16 d1cf2o1 c.2.1.3 (O:1-138,O:304  43.2      10 0.00073   16.4   4.2   26   82-108    79-106 (171)
 17 d2i3oa1 d.153.1.6 (A:1-516) Hy  28.7      17  0.0012   15.0   3.1   21   28-48    330-350 (516)
 18 d2c4ka2 c.61.1.2 (A:167-350) P  26.1      19  0.0014   14.7   3.9   60   64-125    96-156 (184)
 19 g2dg5.1 d.153.1.6 (A:37-387,B:  21.6      23  0.0017   14.2   3.3   22   26-47    349-370 (541)
 20 d2g82a1 c.2.1.3 (A:1-148,A:311  20.9      24  0.0018   14.1   2.8   16   75-92    107-122 (168)
 21 d2nlza1 d.153.1.6 (A:3-539) Ce  20.1      25  0.0018   14.0   3.3   22   27-48    354-375 (537)

No 1  
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=305.18  Aligned_cols=117  Identities=52%  Similarity=0.912  Sum_probs=115.1

Q ss_pred             EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             01225218999917987799997089988997404443557754335203789999999999986981999999779986
Q gi|254780238|r   13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG   92 (129)
Q Consensus        13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G   92 (129)
                      +++++.|++||++|+|||||||||++||++.|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+|
T Consensus         1 k~~~~~Gi~hI~~t~NNTiitlTD~~G~~~~~~S~G~~gfkg~~K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~G   80 (117)
T d2qalk1           1 RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPG   80 (117)
T ss_dssp             CCCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECCSTT
T ss_pred             CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             95144259999925798999998799999999863235546643333479999999999999983996899999679996


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             7888778763693699999638898888688886789
Q gi|254780238|r   93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI  129 (129)
Q Consensus        93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi  129 (129)
                      |++++++|+..||+|.+|+|+||+|||||||||+|||
T Consensus        81 R~~air~l~~~gl~I~~I~D~TpiphnGcRp~K~RRv  117 (117)
T d2qalk1          81 RESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV  117 (117)
T ss_dssp             TTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             4999999975898899989899999899898999899


No 2  
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=302.01  Aligned_cols=116  Identities=52%  Similarity=0.868  Sum_probs=114.0

Q ss_pred             EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             01225218999917987799997089988997404443557754335203789999999999986981999999779986
Q gi|254780238|r   13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG   92 (129)
Q Consensus        13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G   92 (129)
                      +++++.|++||++|+|||||||||++||+++|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+|
T Consensus         1 k~~~~~GivhI~~t~NNT~itlTD~~Gn~i~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~G~g   80 (119)
T d2uubk1           1 KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG   80 (119)
T ss_dssp             CCCCSEEEEEEEECSSCEEEEEECTTSCEEEEEETTTSSCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECCCTT
T ss_pred             CCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             96042538999923688999998799999999844620006643345257899999999999984981999999868999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             788877876369369999963889888868888678
Q gi|254780238|r   93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR  128 (129)
Q Consensus        93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR  128 (129)
                      |++++++|+..|++|++|+|+||+|||||||||+||
T Consensus        81 R~~~ik~l~~~g~kI~~I~D~T~iphnGcRp~K~RR  116 (119)
T d2uubk1          81 REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR  116 (119)
T ss_dssp             HHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGC
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             399999998789889999989999989989898887


No 3  
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=97.26  E-value=0.0011  Score=40.75  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             CCEEEEEEECCCCEEEEEE--CCCC-CEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--EECC
Q ss_conf             5218999917987799997--0899-889974044435577543--3520378999999999998698199999--9779
Q gi|254780238|r   17 VSGRAHVVSTFNNTRITIT--DPHG-NTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVK--VSGL   89 (129)
Q Consensus        17 ~~GiihI~~t~NNTiitlT--d~~G-n~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~--ikG~   89 (129)
                      ....+.|+.|.+|+++.+.  |..| .+++.+|+-.+..++.+.  ....||+.++..+++++++.|+..+.+-  ..|+
T Consensus        30 ~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvfD~G~~~~  109 (186)
T d1vqon1          30 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSP  109 (186)
T ss_dssp             CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSCC
T ss_pred             CCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99769999958915999988448999799997043255420004763777998867999999986255613885077778


Q ss_pred             CC-CH-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             98-67-88877876369369999963889888868888
Q gi|254780238|r   90 GA-GR-DSALRALRAIGFTIVSICDVTMIAHNGCRPRK  125 (129)
Q Consensus        90 G~-GR-~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K  125 (129)
                      -. || .+++++....||+         |||+-.+-|-
T Consensus       110 ~yhgRV~A~akgard~GL~---------Iph~~~~~p~  138 (186)
T d1vqon1         110 TPGSKVFAIQEGAIDAGLD---------IPHNDDVLAD  138 (186)
T ss_dssp             CTTCHHHHHHHHHHHTTCB---------CCCCGGGSCC
T ss_pred             CCCCHHHHHHHHHHHCCCC---------CCCCCCCCCC
T ss_conf             7652299999999966916---------7888765888


No 4  
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.00  E-value=0.00045  Score=43.01  Aligned_cols=86  Identities=22%  Similarity=0.212  Sum_probs=64.6

Q ss_pred             EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH-HH
Q ss_conf             899991798779999708-998899740444355775433520378999999999998698199999977-998-67-88
Q gi|254780238|r   20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR-DS   95 (129)
Q Consensus        20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR-~~   95 (129)
                      .+.|+.|.+|+.+++.|. .|.++..+|+=...++....+.-.||..+++.+++++++.|+..+..- +| +-+ || .+
T Consensus         7 RL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~~~~~n~~aA~~vG~~~a~kak~~gi~~vvfD-r~g~~yhGrvka   85 (97)
T d1ovya_           7 RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RGGYLYHGRVKA   85 (97)
T ss_dssp             SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-STTCSSCSSTHH
T ss_pred             EEEEEEECCEEEEEEEECCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHHH
T ss_conf             8999983783899999757980899731133443123457399999999999999998699789973-799714189999


Q ss_pred             HHHHHHHCCCE
Q ss_conf             87787636936
Q gi|254780238|r   96 ALRALRAIGFT  106 (129)
Q Consensus        96 ~ik~l~~~glk  106 (129)
                      +..++...||+
T Consensus        86 ~a~~~R~~Gl~   96 (97)
T d1ovya_          86 LADAAREAGLE   96 (97)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHCCC
T ss_conf             99999982888


No 5  
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}
Probab=96.50  E-value=0.0033  Score=37.70  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH
Q ss_conf             18999917987799997089-9889974044435577543--3520378999999999998698199999977-998-67
Q gi|254780238|r   19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR   93 (129)
Q Consensus        19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR   93 (129)
                      .-+.|+-|.+|...++.|.. +.++..+|+=...+++..+  +.-.||..+++.+++++++.||..| ++=+| +=. ||
T Consensus        22 pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~v-vfDR~g~~YhGr  100 (113)
T d2gycm1          22 TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV-SFDRSGFQYHGR  100 (113)
T ss_dssp             CCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCC-CCBCCSCCSSSH
T ss_pred             CEEEEEEECCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCHH
T ss_conf             7599998178179999984699178874103566654327775328999999999999998799999-987999864149


Q ss_pred             H-HHHHHHHHCCC
Q ss_conf             8-88778763693
Q gi|254780238|r   94 D-SALRALRAIGF  105 (129)
Q Consensus        94 ~-~~ik~l~~~gl  105 (129)
                      - ++.-++...||
T Consensus       101 Vka~ad~aRe~Gl  113 (113)
T d2gycm1         101 VQALADAAREAGL  113 (113)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999997489


No 6  
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
Probab=95.35  E-value=0.011  Score=34.63  Aligned_cols=60  Identities=22%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             899991798779999708-998899740444355775433520378999999999998698199
Q gi|254780238|r   20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSL   82 (129)
Q Consensus        20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v   82 (129)
                      .+.|+-|.+|..+.+.|. +|.+|..+|+-...+++   ....+|..+++.+++++++.||..|
T Consensus         3 RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~---~~~~~A~~vG~~la~~ak~~gI~~v   63 (86)
T d2j01s1           3 RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG---NKTEVARQVGRALAEKALALGIKQV   63 (86)
T ss_dssp             EEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS---CHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred             EEEEEECCCEEEEEEEECCCCEEEEEEECCCHHHCC---CCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             799998178389999976798699998213111048---7789999999999999998799889


No 7  
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=89.60  E-value=0.075  Score=29.44  Aligned_cols=73  Identities=25%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CC-CCHHH
Q ss_conf             18999917987799997089-98899740444355775433520378999999999998698199999977-99-86788
Q gi|254780238|r   19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LG-AGRDS   95 (129)
Q Consensus        19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G-~GR~~   95 (129)
                      ..+.|+-|.+|...++.|.. |.+|+.+|+=....    .....+|..+++.+++++++.||+.| ++=+| += -||-.
T Consensus        20 pRL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~~----~~~~~~a~~vG~~ia~~a~~kgi~~v-~FDR~g~~YHGrvk   94 (104)
T d2zjrl1          20 LRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKS----GNKTDTAAAVGKALAAAAAEKGIKQV-VFDRGSYKYHGRVK   94 (104)
T ss_dssp             EEECCCTTSSCCCCCEEETTTTEECCCCCSCSCCT----TCSSSSHHHHHHHHHHHHHTTCCCCC-EECCCSSCSCSHHH
T ss_pred             CEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCC----CCHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHH
T ss_conf             67999970670689999657886787622443224----53156899999999999998799899-98789973213999


Q ss_pred             H
Q ss_conf             8
Q gi|254780238|r   96 A   96 (129)
Q Consensus        96 ~   96 (129)
                      +
T Consensus        95 a   95 (104)
T d2zjrl1          95 A   95 (104)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 8  
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=82.83  E-value=0.75  Score=23.29  Aligned_cols=63  Identities=11%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH-HCCCEEEEEEECCC
Q ss_conf             7754335203789999999999986981999999779986788877876-36936999996388
Q gi|254780238|r   53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALR-AIGFTIVSICDVTM  115 (129)
Q Consensus        53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~-~~glkI~~I~D~T~  115 (129)
                      .|+...|.|-...+.+.+.+..-...++...|.+.|||.=-..+.+-|. ..|.+|+.+.|...
T Consensus         4 ~gR~eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g   67 (239)
T d1gtma1           4 LGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKG   67 (239)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             8874064699999999999971999768999999798899999999999836720020013655


No 9  
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=81.87  E-value=0.87  Score=22.90  Aligned_cols=63  Identities=13%  Similarity=0.158  Sum_probs=48.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             7754335203789999999999986981999999779986788877876369369999963889
Q gi|254780238|r   53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMI  116 (129)
Q Consensus        53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~i  116 (129)
                      .++...|-|-...+.+.+++. ....++...|.+.|||.=-..+.+-|...|-+|+.+.|..--
T Consensus         9 ~gR~eATG~Gv~~~~~~~~~~-~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~   71 (255)
T d1bgva1           9 LVRPEATGYGSVYYVEAVMKH-ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGY   71 (255)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHH-TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf             999751037799999999996-798978999999797889999999999859858999658861


No 10 
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=81.12  E-value=0.98  Score=22.58  Aligned_cols=63  Identities=19%  Similarity=0.262  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             5775433520378999999999998698199999977998678887787636936999996388
Q gi|254780238|r   52 FSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTM  115 (129)
Q Consensus        52 fkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~  115 (129)
                      -.++...|.|-.....+.+++..- ..+....|.+.|||.=-..+.+-|...|-+|+.|.|...
T Consensus         3 s~~r~~ATg~Gv~~~~~~~~~~~~-~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g   65 (242)
T d1v9la1           3 NPVREYATGFGVAVATREMAKKLW-GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDING   65 (242)
T ss_dssp             CGGGGGHHHHHHHHHHHHHHHHHH-SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             999842334779999999999759-997999999989889999999999976983799606542


No 11 
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=77.83  E-value=0.74  Score=23.33  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH-HHCCCEEEEEEECCCCCC
Q ss_conf             775433520378999999999998698199999977998678887787-636936999996388988
Q gi|254780238|r   53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRAL-RAIGFTIVSICDVTMIAH  118 (129)
Q Consensus        53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l-~~~glkI~~I~D~T~ip~  118 (129)
                      .|+...|.|-...+.+.+.+.. ...++...|.+.|||.=-..+.+-| +..|-+|+.+.|....-|
T Consensus         4 ~gR~eATg~Gv~~~~~~~~~~~-~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~   69 (234)
T d1b26a1           4 KGREEATGRGVKVCAGLAMDVL-GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIY   69 (234)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHT-TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf             8855240188999999999975-99868898999898889999999999866875487645887088


No 12 
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}
Probab=61.08  E-value=2.4  Score=20.21  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHH-------HCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             7543352037899999999999-------86981999999779986788877876369369999963889888
Q gi|254780238|r   54 GSRKNSPFAAQVATDDCSAKAQ-------NHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHN  119 (129)
Q Consensus        54 g~kk~t~~Aa~~~a~~~~~~~~-------~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~n  119 (129)
                      |+...|-|-...+.+.+++...       +.+++.-.|.+.|||.=-..+.+-|...|-+|+-|.|..-.-+|
T Consensus         2 GR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~   74 (293)
T d1hwxa1           2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWN   74 (293)
T ss_dssp             THHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCC
T ss_conf             9850709899999999998554211206777878988999898899999999999879989999845223206


No 13 
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Probab=57.47  E-value=5.1  Score=18.18  Aligned_cols=30  Identities=33%  Similarity=0.457  Sum_probs=11.0

Q ss_pred             EEEEECCCC-CHHHHHHHHHHCCCEEEEEEE
Q ss_conf             999977998-678887787636936999996
Q gi|254780238|r   83 EVKVSGLGA-GRDSALRALRAIGFTIVSICD  112 (129)
Q Consensus        83 ~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D  112 (129)
                      .|-+.|||. ||..+-..+....++|..|-|
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             9999787279999999983189819999957


No 14 
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=56.92  E-value=5  Score=18.28  Aligned_cols=30  Identities=37%  Similarity=0.470  Sum_probs=11.2

Q ss_pred             EEEEECCCC-CHHHHHHHHHHCCCEEEEEEE
Q ss_conf             999977998-678887787636936999996
Q gi|254780238|r   83 EVKVSGLGA-GRDSALRALRAIGFTIVSICD  112 (129)
Q Consensus        83 ~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D  112 (129)
                      .|-+.|||. ||..+-..+....++|..|-|
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9999798578999999997789957999668


No 15 
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.62  E-value=8.5  Score=16.84  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=11.2

Q ss_pred             EEEEECCCC-CHHHHHHHHH-HCCCEEEEEEECC
Q ss_conf             999977998-6788877876-3693699999638
Q gi|254780238|r   83 EVKVSGLGA-GRDSALRALR-AIGFTIVSICDVT  114 (129)
Q Consensus        83 ~v~ikG~G~-GR~~~ik~l~-~~glkI~~I~D~T  114 (129)
                      .|-|.|||. ||. ++|++. ...++|+.|-|..
T Consensus         4 rIaINGfGRIGR~-v~Ral~~~~dieiVaINd~~   36 (172)
T d2czca2           4 KVGVNGYGTIGKR-VAYAVTKQDDMELIGITKTK   36 (172)
T ss_dssp             EEEEECCSHHHHH-HHHHHHTCTTEEEEEEEESS
T ss_pred             EEEEECCCHHHHH-HHHHHHHCCCCEEEEEECCC
T ss_conf             9999898788999-99999759996599996699


No 16 
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}
Probab=43.21  E-value=10  Score=16.42  Aligned_cols=26  Identities=12%  Similarity=0.185  Sum_probs=9.6

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHHCCCEEE
Q ss_conf             999997--799867888778763693699
Q gi|254780238|r   82 LEVKVS--GLGAGRDSALRALRAIGFTIV  108 (129)
Q Consensus        82 v~v~ik--G~G~GR~~~ik~l~~~glkI~  108 (129)
                      +++++-  |.+.+++.+-.-|. .|.+++
T Consensus        79 vDvViEcTG~f~~~~~~~~hl~-~G~K~v  106 (171)
T d1cf2o1          79 ADIVIDCTPEGIGAKNLKMYKE-KGIKAI  106 (171)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHH-TTCEEE
T ss_pred             CCEEEECCCCCCCHHHHHHHHH-CCCCEE
T ss_conf             9899983677788899999998-699799


No 17 
>d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=28.69  E-value=17  Score=14.98  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=17.3

Q ss_pred             CCEEEEEECCCCCEEEEECCC
Q ss_conf             877999970899889974044
Q gi|254780238|r   28 NNTRITITDPHGNTIAWSSPK   48 (129)
Q Consensus        28 NNTiitlTd~~Gn~i~~~S~G   48 (129)
                      .-|++++.|..||.++.+++-
T Consensus       330 ~Tth~svvD~~GnaVs~T~Si  350 (516)
T d2i3oa1         330 DTTYFSISDSEGRSVSIIQSN  350 (516)
T ss_dssp             EEEEEEEEETTSCEEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEECCCC
T ss_conf             977999997889888630346


No 18 
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.11  E-value=19  Score=14.70  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEE-ECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             89999999999986981999999-779986788877876369369999963889888868888
Q gi|254780238|r   64 QVATDDCSAKAQNHGMSSLEVKV-SGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRK  125 (129)
Q Consensus        64 ~~~a~~~~~~~~~~gi~~v~v~i-kG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K  125 (129)
                      -.+...+++.+++.|-+.|.+.. .|.-.+  .+++-|..+.+.=+.++|..|.+.+....+|
T Consensus        96 G~T~~~a~~~Lk~~GA~~v~~~~tH~~~~~--~a~~~l~~~~i~~i~~tntip~~~~~~~~~k  156 (184)
T d2c4ka2          96 VESFVAAAEILKERGAYKIYVMATHGILSA--EAPRLIEESSVDEVVVTNTVPHEVQKLQCPK  156 (184)
T ss_dssp             THHHHHHHHHHHTTTEEEEEEEEEEECCCT--THHHHHHHSSCCEEEEEBTSCCHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHCCCCCEEEEECCCCCCHHHCCCCC
T ss_conf             577999999997426555347887503176--1777752477457999567367166537998


No 19 
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580) Gamma-glutamyltranspeptidase, GGT {Escherichia coli [TaxId: 562]}
Probab=21.57  E-value=23  Score=14.16  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=17.9

Q ss_pred             CCCCEEEEEECCCCCEEEEECC
Q ss_conf             7987799997089988997404
Q gi|254780238|r   26 TFNNTRITITDPHGNTIAWSSP   47 (129)
Q Consensus        26 t~NNTiitlTd~~Gn~i~~~S~   47 (129)
                      +..-|++++.|..||.+++.++
T Consensus       349 ~~~Tt~~sv~D~~GnaVs~t~S  370 (541)
T g2dg5.1         349 PYETTHYSVVDKDGNAVAVTYT  370 (541)
T ss_dssp             GGCCEEEEEECTTSCEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEECC
T ss_conf             9996599999589998999605


No 20 
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Probab=20.88  E-value=24  Score=14.07  Aligned_cols=16  Identities=13%  Similarity=0.264  Sum_probs=6.8

Q ss_pred             HHCCCCEEEEEEECCCCC
Q ss_conf             986981999999779986
Q gi|254780238|r   75 QNHGMSSLEVKVSGLGAG   92 (129)
Q Consensus        75 ~~~gi~~v~v~ikG~G~G   92 (129)
                      .+.|.+.|.|  ..|.++
T Consensus       107 l~~gakkVii--SAP~kd  122 (168)
T d2g82a1         107 LEGGAKKVII--TAPAKG  122 (168)
T ss_dssp             HHTTCSEEEE--SSCCBS
T ss_pred             HCCCCCEEEE--CCCCCC
T ss_conf             0356634552--145555


No 21 
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus halodurans [TaxId: 86665]}
Probab=20.07  E-value=25  Score=13.96  Aligned_cols=22  Identities=14%  Similarity=0.274  Sum_probs=17.9

Q ss_pred             CCCEEEEEECCCCCEEEEECCC
Q ss_conf             9877999970899889974044
Q gi|254780238|r   27 FNNTRITITDPHGNTIAWSSPK   48 (129)
Q Consensus        27 ~NNTiitlTd~~Gn~i~~~S~G   48 (129)
                      ..-|++++.|..||.++.+++-
T Consensus       354 ~~Tth~svvD~~GnaVs~T~Si  375 (537)
T d2nlza1         354 GGTVYLATADGDGNMVSFIQSN  375 (537)
T ss_dssp             --CEEEEEEETTSCEEEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEECCC
T ss_conf             9867999984899789872366


Done!