Query gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 107 out of 1080 Neff 5.7 Searched_HMMs 13730 Date Tue May 24 01:16:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780238.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2qalk1 c.55.4.1 (K:12-128) Ri 100.0 0 0 305.2 13.4 117 13-129 1-117 (117) 2 d2uubk1 c.55.4.1 (K:11-129) Ri 100.0 0 0 302.0 15.0 116 13-128 1-116 (119) 3 d1vqon1 c.55.4.1 (N:1-186) Rib 97.3 0.0011 7.7E-08 40.8 8.9 100 17-125 30-138 (186) 4 d1ovya_ c.55.4.1 (A:) Ribosoma 97.0 0.00045 3.3E-08 43.0 4.9 86 20-106 7-96 (97) 5 d2gycm1 c.55.4.1 (M:3-115) Rib 96.5 0.0033 2.4E-07 37.7 6.3 86 19-105 22-113 (113) 6 d2j01s1 c.55.4.1 (S:23-108) Ri 95.4 0.011 7.7E-07 34.6 4.6 60 20-82 3-63 (86) 7 d2zjrl1 c.55.4.1 (L:8-111) Rib 89.6 0.075 5.4E-06 29.4 2.0 73 19-96 20-95 (104) 8 d1gtma1 c.2.1.7 (A:181-419) Gl 82.8 0.75 5.5E-05 23.3 4.2 63 53-115 4-67 (239) 9 d1bgva1 c.2.1.7 (A:195-449) Gl 81.9 0.87 6.3E-05 22.9 4.2 63 53-116 9-71 (255) 10 d1v9la1 c.2.1.7 (A:180-421) Gl 81.1 0.98 7.2E-05 22.6 4.3 63 52-115 3-65 (242) 11 d1b26a1 c.2.1.7 (A:179-412) Gl 77.8 0.74 5.4E-05 23.3 2.8 65 53-118 4-69 (234) 12 d1hwxa1 c.2.1.7 (A:209-501) Gl 61.1 2.4 0.00017 20.2 2.4 66 54-119 2-74 (293) 13 d1gado1 c.2.1.3 (O:0-148,O:313 57.5 5.1 0.00037 18.2 3.6 30 83-112 3-33 (166) 14 d1u8fo1 c.2.1.3 (O:3-151,O:316 56.9 5 0.00036 18.3 3.4 30 83-112 3-33 (169) 15 d2czca2 c.2.1.3 (A:1-139,A:302 47.6 8.5 0.00062 16.8 4.2 31 83-114 4-36 (172) 16 d1cf2o1 c.2.1.3 (O:1-138,O:304 43.2 10 0.00073 16.4 4.2 26 82-108 79-106 (171) 17 d2i3oa1 d.153.1.6 (A:1-516) Hy 28.7 17 0.0012 15.0 3.1 21 28-48 330-350 (516) 18 d2c4ka2 c.61.1.2 (A:167-350) P 26.1 19 0.0014 14.7 3.9 60 64-125 96-156 (184) 19 g2dg5.1 d.153.1.6 (A:37-387,B: 21.6 23 0.0017 14.2 3.3 22 26-47 349-370 (541) 20 d2g82a1 c.2.1.3 (A:1-148,A:311 20.9 24 0.0018 14.1 2.8 16 75-92 107-122 (168) 21 d2nlza1 d.153.1.6 (A:3-539) Ce 20.1 25 0.0018 14.0 3.3 22 27-48 354-375 (537) No 1 >d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=305.18 Aligned_cols=117 Identities=52% Similarity=0.912 Sum_probs=115.1 Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC Q ss_conf 01225218999917987799997089988997404443557754335203789999999999986981999999779986 Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG 92 (129) Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G 92 (129) +++++.|++||++|+|||||||||++||++.|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+| T Consensus 1 k~~~~~Gi~hI~~t~NNTiitlTD~~G~~~~~~S~G~~gfkg~~K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~G 80 (117) T d2qalk1 1 RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPG 80 (117) T ss_dssp CCCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECCSTT T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 95144259999925798999998799999999863235546643333479999999999999983996899999679996 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC Q ss_conf 7888778763693699999638898888688886789 Q gi|254780238|r 93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI 129 (129) Q Consensus 93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi 129 (129) |++++++|+..||+|.+|+|+||+|||||||||+||| T Consensus 81 R~~air~l~~~gl~I~~I~D~TpiphnGcRp~K~RRv 117 (117) T d2qalk1 81 RESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117 (117) T ss_dssp TTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC T ss_conf 4999999975898899989899999899898999899 No 2 >d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=302.01 Aligned_cols=116 Identities=52% Similarity=0.868 Sum_probs=114.0 Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC Q ss_conf 01225218999917987799997089988997404443557754335203789999999999986981999999779986 Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG 92 (129) Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G 92 (129) +++++.|++||++|+|||||||||++||+++|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+| T Consensus 1 k~~~~~GivhI~~t~NNT~itlTD~~Gn~i~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~G~g 80 (119) T d2uubk1 1 KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG 80 (119) T ss_dssp CCCCSEEEEEEEECSSCEEEEEECTTSCEEEEEETTTSSCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECCCTT T ss_pred CCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 96042538999923688999998799999999844620006643345257899999999999984981999999868999 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC Q ss_conf 788877876369369999963889888868888678 Q gi|254780238|r 93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129) Q Consensus 93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129) |++++++|+..|++|++|+|+||+|||||||||+|| T Consensus 81 R~~~ik~l~~~g~kI~~I~D~T~iphnGcRp~K~RR 116 (119) T d2uubk1 81 REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 116 (119) T ss_dssp HHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGC T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC T ss_conf 399999998789889999989999989989898887 No 3 >d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=97.26 E-value=0.0011 Score=40.75 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=74.8 Q ss_pred CCEEEEEEECCCCEEEEEE--CCCC-CEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--EECC Q ss_conf 5218999917987799997--0899-889974044435577543--3520378999999999998698199999--9779 Q gi|254780238|r 17 VSGRAHVVSTFNNTRITIT--DPHG-NTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVK--VSGL 89 (129) Q Consensus 17 ~~GiihI~~t~NNTiitlT--d~~G-n~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~--ikG~ 89 (129) ....+.|+.|.+|+++.+. |..| .+++.+|+-.+..++.+. ....||+.++..+++++++.|+..+.+- ..|+ T Consensus 30 ~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvfD~G~~~~ 109 (186) T d1vqon1 30 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSP 109 (186) T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSCC T ss_pred CCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 99769999958915999988448999799997043255420004763777998867999999986255613885077778 Q ss_pred CC-CH-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC Q ss_conf 98-67-88877876369369999963889888868888 Q gi|254780238|r 90 GA-GR-DSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129) Q Consensus 90 G~-GR-~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129) -. || .+++++....||+ |||+-.+-|- T Consensus 110 ~yhgRV~A~akgard~GL~---------Iph~~~~~p~ 138 (186) T d1vqon1 110 TPGSKVFAIQEGAIDAGLD---------IPHNDDVLAD 138 (186) T ss_dssp CTTCHHHHHHHHHHHTTCB---------CCCCGGGSCC T ss_pred CCCCHHHHHHHHHHHCCCC---------CCCCCCCCCC T ss_conf 7652299999999966916---------7888765888 No 4 >d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Probab=97.00 E-value=0.00045 Score=43.01 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=64.6 Q ss_pred EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH-HH Q ss_conf 899991798779999708-998899740444355775433520378999999999998698199999977-998-67-88 Q gi|254780238|r 20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR-DS 95 (129) Q Consensus 20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR-~~ 95 (129) .+.|+.|.+|+.+++.|. .|.++..+|+=...++....+.-.||..+++.+++++++.|+..+..- +| +-+ || .+ T Consensus 7 RL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~~~~~n~~aA~~vG~~~a~kak~~gi~~vvfD-r~g~~yhGrvka 85 (97) T d1ovya_ 7 RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RGGYLYHGRVKA 85 (97) T ss_dssp SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-STTCSSCSSTHH T ss_pred EEEEEEECCEEEEEEEECCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHHH T ss_conf 8999983783899999757980899731133443123457399999999999999998699789973-799714189999 Q ss_pred HHHHHHHCCCE Q ss_conf 87787636936 Q gi|254780238|r 96 ALRALRAIGFT 106 (129) Q Consensus 96 ~ik~l~~~glk 106 (129) +..++...||+ T Consensus 86 ~a~~~R~~Gl~ 96 (97) T d1ovya_ 86 LADAAREAGLE 96 (97) T ss_dssp HHHHHHHHHCC T ss_pred HHHHHHHHCCC T ss_conf 99999982888 No 5 >d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Probab=96.50 E-value=0.0033 Score=37.70 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=61.8 Q ss_pred EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH Q ss_conf 18999917987799997089-9889974044435577543--3520378999999999998698199999977-998-67 Q gi|254780238|r 19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR 93 (129) Q Consensus 19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR 93 (129) .-+.|+-|.+|...++.|.. +.++..+|+=...+++..+ +.-.||..+++.+++++++.||..| ++=+| +=. || T Consensus 22 pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~v-vfDR~g~~YhGr 100 (113) T d2gycm1 22 TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV-SFDRSGFQYHGR 100 (113) T ss_dssp CCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCC-CCBCCSCCSSSH T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCHH T ss_conf 7599998178179999984699178874103566654327775328999999999999998799999-987999864149 Q ss_pred H-HHHHHHHHCCC Q ss_conf 8-88778763693 Q gi|254780238|r 94 D-SALRALRAIGF 105 (129) Q Consensus 94 ~-~~ik~l~~~gl 105 (129) - ++.-++...|| T Consensus 101 Vka~ad~aRe~Gl 113 (113) T d2gycm1 101 VQALADAAREAGL 113 (113) T ss_dssp HHHHHHHHHHHTC T ss_pred HHHHHHHHHHCCC T ss_conf 9999999997489 No 6 >d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Probab=95.35 E-value=0.011 Score=34.63 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=48.9 Q ss_pred EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE Q ss_conf 899991798779999708-998899740444355775433520378999999999998698199 Q gi|254780238|r 20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSL 82 (129) Q Consensus 20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v 82 (129) .+.|+-|.+|..+.+.|. +|.+|..+|+-...+++ ....+|..+++.+++++++.||..| T Consensus 3 RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~---~~~~~A~~vG~~la~~ak~~gI~~v 63 (86) T d2j01s1 3 RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG---NKTEVARQVGRALAEKALALGIKQV 63 (86) T ss_dssp EEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS---CHHHHHHHHHHHHHHHHHHTSCCCC T ss_pred EEEEEECCCEEEEEEEECCCCEEEEEEECCCHHHCC---CCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 799998178389999976798699998213111048---7789999999999999998799889 No 7 >d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Probab=89.60 E-value=0.075 Score=29.44 Aligned_cols=73 Identities=25% Similarity=0.221 Sum_probs=52.1 Q ss_pred EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CC-CCHHH Q ss_conf 18999917987799997089-98899740444355775433520378999999999998698199999977-99-86788 Q gi|254780238|r 19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LG-AGRDS 95 (129) Q Consensus 19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G-~GR~~ 95 (129) ..+.|+-|.+|...++.|.. |.+|+.+|+=.... .....+|..+++.+++++++.||+.| ++=+| += -||-. T Consensus 20 pRL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~~----~~~~~~a~~vG~~ia~~a~~kgi~~v-~FDR~g~~YHGrvk 94 (104) T d2zjrl1 20 LRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKS----GNKTDTAAAVGKALAAAAAEKGIKQV-VFDRGSYKYHGRVK 94 (104) T ss_dssp EEECCCTTSSCCCCCEEETTTTEECCCCCSCSCCT----TCSSSSHHHHHHHHHHHHHTTCCCCC-EECCCSSCSCSHHH T ss_pred CEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCC----CCHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHH T ss_conf 67999970670689999657886787622443224----53156899999999999998799899-98789973213999 Q ss_pred H Q ss_conf 8 Q gi|254780238|r 96 A 96 (129) Q Consensus 96 ~ 96 (129) + T Consensus 95 a 95 (104) T d2zjrl1 95 A 95 (104) T ss_dssp H T ss_pred H T ss_conf 9 No 8 >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=82.83 E-value=0.75 Score=23.29 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=44.9 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH-HCCCEEEEEEECCC Q ss_conf 7754335203789999999999986981999999779986788877876-36936999996388 Q gi|254780238|r 53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALR-AIGFTIVSICDVTM 115 (129) Q Consensus 53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~-~~glkI~~I~D~T~ 115 (129) .|+...|.|-...+.+.+.+..-...++...|.+.|||.=-..+.+-|. ..|.+|+.+.|... T Consensus 4 ~gR~eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g 67 (239) T d1gtma1 4 LGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKG 67 (239) T ss_dssp TTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSC T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 8874064699999999999971999768999999798899999999999836720020013655 No 9 >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Probab=81.87 E-value=0.87 Score=22.90 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=48.7 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 7754335203789999999999986981999999779986788877876369369999963889 Q gi|254780238|r 53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMI 116 (129) Q Consensus 53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~i 116 (129) .++...|-|-...+.+.+++. ....++...|.+.|||.=-..+.+-|...|-+|+.+.|..-- T Consensus 9 ~gR~eATG~Gv~~~~~~~~~~-~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~ 71 (255) T d1bgva1 9 LVRPEATGYGSVYYVEAVMKH-ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGY 71 (255) T ss_dssp TTTTTHHHHHHHHHHHHHHHH-TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEE T ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCE T ss_conf 999751037799999999996-798978999999797889999999999859858999658861 No 10 >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Probab=81.12 E-value=0.98 Score=22.58 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=48.8 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 5775433520378999999999998698199999977998678887787636936999996388 Q gi|254780238|r 52 FSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTM 115 (129) Q Consensus 52 fkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ 115 (129) -.++...|.|-.....+.+++..- ..+....|.+.|||.=-..+.+-|...|-+|+.|.|... T Consensus 3 s~~r~~ATg~Gv~~~~~~~~~~~~-~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g 65 (242) T d1v9la1 3 NPVREYATGFGVAVATREMAKKLW-GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDING 65 (242) T ss_dssp CGGGGGHHHHHHHHHHHHHHHHHH-SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSC T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999842334779999999999759-997999999989889999999999976983799606542 No 11 >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Probab=77.83 E-value=0.74 Score=23.33 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=45.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH-HHCCCEEEEEEECCCCCC Q ss_conf 775433520378999999999998698199999977998678887787-636936999996388988 Q gi|254780238|r 53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRAL-RAIGFTIVSICDVTMIAH 118 (129) Q Consensus 53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l-~~~glkI~~I~D~T~ip~ 118 (129) .|+...|.|-...+.+.+.+.. ...++...|.+.|||.=-..+.+-| +..|-+|+.+.|....-| T Consensus 4 ~gR~eATg~Gv~~~~~~~~~~~-~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~ 69 (234) T d1b26a1 4 KGREEATGRGVKVCAGLAMDVL-GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIY 69 (234) T ss_dssp TTHHHHHHHHHHHHHHHHHHHT-TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEE T ss_conf 8855240188999999999975-99868898999898889999999999866875487645887088 No 12 >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Probab=61.08 E-value=2.4 Score=20.21 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=44.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-------HCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCC Q ss_conf 7543352037899999999999-------86981999999779986788877876369369999963889888 Q gi|254780238|r 54 GSRKNSPFAAQVATDDCSAKAQ-------NHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHN 119 (129) Q Consensus 54 g~kk~t~~Aa~~~a~~~~~~~~-------~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~n 119 (129) |+...|-|-...+.+.+++... +.+++.-.|.+.|||.=-..+.+-|...|-+|+-|.|..-.-+| T Consensus 2 GR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~ 74 (293) T d1hwxa1 2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWN 74 (293) T ss_dssp THHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECC T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCC T ss_conf 9850709899999999998554211206777878988999898899999999999879989999845223206 No 13 >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Probab=57.47 E-value=5.1 Score=18.18 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=11.0 Q ss_pred EEEEECCCC-CHHHHHHHHHHCCCEEEEEEE Q ss_conf 999977998-678887787636936999996 Q gi|254780238|r 83 EVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129) Q Consensus 83 ~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129) .|-+.|||. ||..+-..+....++|..|-| T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd 33 (166) T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND 33 (166) T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 9999787279999999983189819999957 No 14 >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Probab=56.92 E-value=5 Score=18.28 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=11.2 Q ss_pred EEEEECCCC-CHHHHHHHHHHCCCEEEEEEE Q ss_conf 999977998-678887787636936999996 Q gi|254780238|r 83 EVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129) Q Consensus 83 ~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129) .|-+.|||. ||..+-..+....++|..|-| T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd 33 (169) T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND 33 (169) T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 9999798578999999997789957999668 No 15 >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=47.62 E-value=8.5 Score=16.84 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=11.2 Q ss_pred EEEEECCCC-CHHHHHHHHH-HCCCEEEEEEECC Q ss_conf 999977998-6788877876-3693699999638 Q gi|254780238|r 83 EVKVSGLGA-GRDSALRALR-AIGFTIVSICDVT 114 (129) Q Consensus 83 ~v~ikG~G~-GR~~~ik~l~-~~glkI~~I~D~T 114 (129) .|-|.|||. ||. ++|++. ...++|+.|-|.. T Consensus 4 rIaINGfGRIGR~-v~Ral~~~~dieiVaINd~~ 36 (172) T d2czca2 4 KVGVNGYGTIGKR-VAYAVTKQDDMELIGITKTK 36 (172) T ss_dssp EEEEECCSHHHHH-HHHHHHTCTTEEEEEEEESS T ss_pred EEEEECCCHHHHH-HHHHHHHCCCCEEEEEECCC T ss_conf 9999898788999-99999759996599996699 No 16 >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Probab=43.21 E-value=10 Score=16.42 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=9.6 Q ss_pred EEEEEE--CCCCCHHHHHHHHHHCCCEEE Q ss_conf 999997--799867888778763693699 Q gi|254780238|r 82 LEVKVS--GLGAGRDSALRALRAIGFTIV 108 (129) Q Consensus 82 v~v~ik--G~G~GR~~~ik~l~~~glkI~ 108 (129) +++++- |.+.+++.+-.-|. .|.+++ T Consensus 79 vDvViEcTG~f~~~~~~~~hl~-~G~K~v 106 (171) T d1cf2o1 79 ADIVIDCTPEGIGAKNLKMYKE-KGIKAI 106 (171) T ss_dssp CSEEEECCSTTHHHHHHHHHHH-TTCEEE T ss_pred CCEEEECCCCCCCHHHHHHHHH-CCCCEE T ss_conf 9899983677788899999998-699799 No 17 >d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994 {Thermoplasma acidophilum [TaxId: 2303]} Probab=28.69 E-value=17 Score=14.98 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.3 Q ss_pred CCEEEEEECCCCCEEEEECCC Q ss_conf 877999970899889974044 Q gi|254780238|r 28 NNTRITITDPHGNTIAWSSPK 48 (129) Q Consensus 28 NNTiitlTd~~Gn~i~~~S~G 48 (129) .-|++++.|..||.++.+++- T Consensus 330 ~Tth~svvD~~GnaVs~T~Si 350 (516) T d2i3oa1 330 DTTYFSISDSEGRSVSIIQSN 350 (516) T ss_dssp EEEEEEEEETTSCEEEEEEEE T ss_pred CCEEEEEECCCCCEEEECCCC T ss_conf 977999997889888630346 No 18 >d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=26.11 E-value=19 Score=14.70 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEE-ECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC Q ss_conf 89999999999986981999999-779986788877876369369999963889888868888 Q gi|254780238|r 64 QVATDDCSAKAQNHGMSSLEVKV-SGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129) Q Consensus 64 ~~~a~~~~~~~~~~gi~~v~v~i-kG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129) -.+...+++.+++.|-+.|.+.. .|.-.+ .+++-|..+.+.=+.++|..|.+.+....+| T Consensus 96 G~T~~~a~~~Lk~~GA~~v~~~~tH~~~~~--~a~~~l~~~~i~~i~~tntip~~~~~~~~~k 156 (184) T d2c4ka2 96 VESFVAAAEILKERGAYKIYVMATHGILSA--EAPRLIEESSVDEVVVTNTVPHEVQKLQCPK 156 (184) T ss_dssp THHHHHHHHHHHTTTEEEEEEEEEEECCCT--THHHHHHHSSCCEEEEEBTSCCHHHHHHCTT T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHCCCCCEEEEECCCCCCHHHCCCCC T ss_conf 577999999997426555347887503176--1777752477457999567367166537998 No 19 >g2dg5.1 d.153.1.6 (A:37-387,B:391-580) Gamma-glutamyltranspeptidase, GGT {Escherichia coli [TaxId: 562]} Probab=21.57 E-value=23 Score=14.16 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.9 Q ss_pred CCCCEEEEEECCCCCEEEEECC Q ss_conf 7987799997089988997404 Q gi|254780238|r 26 TFNNTRITITDPHGNTIAWSSP 47 (129) Q Consensus 26 t~NNTiitlTd~~Gn~i~~~S~ 47 (129) +..-|++++.|..||.+++.++ T Consensus 349 ~~~Tt~~sv~D~~GnaVs~t~S 370 (541) T g2dg5.1 349 PYETTHYSVVDKDGNAVAVTYT 370 (541) T ss_dssp GGCCEEEEEECTTSCEEEEEEE T ss_pred CCCCEEEEEECCCCCEEEEECC T ss_conf 9996599999589998999605 No 20 >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Probab=20.88 E-value=24 Score=14.07 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=6.8 Q ss_pred HHCCCCEEEEEEECCCCC Q ss_conf 986981999999779986 Q gi|254780238|r 75 QNHGMSSLEVKVSGLGAG 92 (129) Q Consensus 75 ~~~gi~~v~v~ikG~G~G 92 (129) .+.|.+.|.| ..|.++ T Consensus 107 l~~gakkVii--SAP~kd 122 (168) T d2g82a1 107 LEGGAKKVII--TAPAKG 122 (168) T ss_dssp HHTTCSEEEE--SSCCBS T ss_pred HCCCCCEEEE--CCCCCC T ss_conf 0356634552--145555 No 21 >d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus halodurans [TaxId: 86665]} Probab=20.07 E-value=25 Score=13.96 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=17.9 Q ss_pred CCCEEEEEECCCCCEEEEECCC Q ss_conf 9877999970899889974044 Q gi|254780238|r 27 FNNTRITITDPHGNTIAWSSPK 48 (129) Q Consensus 27 ~NNTiitlTd~~Gn~i~~~S~G 48 (129) ..-|++++.|..||.++.+++- T Consensus 354 ~~Tth~svvD~~GnaVs~T~Si 375 (537) T d2nlza1 354 GGTVYLATADGDGNMVSFIQSN 375 (537) T ss_dssp --CEEEEEEETTSCEEEEEEEC T ss_pred CCCEEEEEECCCCCEEEEECCC T ss_conf 9867999984899789872366 Done!