HHsearch alignment for GI: 254780239 and conserved domain: pfam00416
>pfam00416 Ribosomal_S13 Ribosomal protein S13/S18. This family includes ribosomal protein S13 from prokaryotes and S18 from eukaryotes.
Probab=100.00 E-value=2.5e-42 Score=284.25 Aligned_cols=106 Identities=50% Similarity=0.817 Sum_probs=104.6
Q ss_pred EEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55167589985766643120071768999999980888212002279899999998612456433378899999999997
Q gi|254780239|r 3 RIAGVNIPRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNIKRLM 82 (122)
Q Consensus 3 rI~g~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i~rl~ 82 (122)
T Consensus 1 RI~gtdi~~~K~v~~ALt~I~GIG~~~A~~Ic~~lgi~~~~k~~~Lt~~qi~~l~~~i~-~~~i~~dL~~~~~~~I~rl~ 79 (106)
T pfam00416 1 RILNTNLDGNKKIEIALTYIKGIGRRKANQILKKAGVDKDKRVGELTEEEIDRIRDIIS-NYVVENDLRRKIRNDIERLK 79 (106)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHH
T ss_conf 96787799996864441121052899999999991959775715499999999999997-52004789999999899998
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 303100123317987877077877657
Q gi|254780239|r 83 DLGCYRGLRHRRGLPVRGQRTHTNART 109 (122)
Q Consensus 83 ~i~syrG~RH~~gLpvRGQRT~tn~rt 109 (122)
T Consensus 80 ~i~syrG~RH~~gLpvRGQrT~tn~rT 106 (106)
T pfam00416 80 KIRCYRGLRHIRGLPVRGQRTKTNART 106 (106)
T ss_pred HHCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 744030126637997688768888898