HHsearch alignment of GI: 254780239 and MMDB domain: 3gpu_A_133-256
>3gpu_A (A:133-256) DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ...
Probab=96.32 E-value=0.0051 Score=39.84 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 85766643---1200717689999999808882120022798999999986124
Q gi|254780239|r 12 AKRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQ 62 (122)
Q Consensus 12 ~K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~ 62 (122)
+++|.-+| +-|-|||.-.|..||..++|+|..++.+|+++|+..|-+.+.+
T Consensus 23 ~~~Ik~~LlDQ~~iaGiGNiya~EiLf~a~ihP~~~~~~Ls~~~~~~L~~~i~~ 76 (124)
T 3gpu_A 23 KRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 76 (124)
T ss_dssp CSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCCHHHHEECCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 755678501075263034125788998816884775655546667678999999