HHsearch results for GI: 254780239 and protein with PDBid: 2zkq_m
>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M*
Probab=100.00 E-value=1.4e-45 Score=302.09 Aligned_cols=119 Identities=29% Similarity=0.472 Sum_probs=114.6
Q ss_pred CCEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCC-----------------
Q ss_conf 945516758998576664312007176899999998088821200227989999999861245-----------------
Q gi|254780239|r 1 MARIAGVNIPRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQD----------------- 63 (122)
Q Consensus 1 mvrI~g~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~----------------- 63 (122)
||||+|+|||++|+|.+|||+|||||+++|.+||+.+||||++++++||++|+++|+++|+++
T Consensus 12 ivRI~g~dI~g~K~v~~aLt~I~GIG~~~A~~Ic~~lgI~~~~kvg~Lt~~ql~kl~~~I~~~~~~~ip~w~~nr~~d~~ 91 (152)
T 2zkq_m 12 ILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVK 91 (152)
T ss_dssp -CCCSTTCCCCSSBHHHHGGGSTTCCHHHHHHHHHHHTCCTTSBTTTSCHHHHHHHHHHHHTTCSCCSCCCSSCSSSCCC
T ss_pred HHHEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 34132852799978876500210658999999999938995430151999999999999850001157558776566650
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----64333788999999999973031001233179878770778776577776655423469
Q gi|254780239|r 64 -----YQVEGDLRRTVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKKFGKGGVARKR 122 (122)
Q Consensus 64 -----~~i~~~L~~~~~~~i~rl~~i~syrG~RH~~gLpvRGQRT~tn~rt~k~~~~~~~~kkk 122 (122)
|++|+||++.+++||+||++|+||||+||++|||||||||||||||++++ +|.+||
T Consensus 92 ~g~~~hli~~dL~~~~~~dI~rl~~i~syRG~RH~~gLpVRGQrT~tN~R~~~~~---gv~~kK 152 (152)
T 2zkq_m 92 DGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTV---GVSKKK 152 (152)
T ss_dssp CCSSCCCSSHHHHHHHHHHHHHHHHSSCHHHHHHHHTCBSBCCCSSSSCCSSSCC---CCCCCC
T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCC
T ss_conf 4531022076799999997999998605889998758987877688777778866---767789