HHSEARCH alignment of GI: 254780239 and SCOP domain: d2gy9m1

Alignment
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=7.1e-44  Score=290.99  Aligned_cols=114  Identities=55%  Similarity=0.862  Sum_probs=110.6

Q ss_pred             CEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             45516758998576664312007176899999998088821200227989999999861245643337889999999999
Q gi|254780239|r    2 ARIAGVNIPRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNIKRL   81 (122)
Q Consensus         2 vrI~g~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i~rl   81 (122)
                      +||+|+|||++|+|.+|||+|||||+++|.+||..+||||++++++||++|++.|+++|+ +|.+|+||++.+++||+||
T Consensus         1 aRI~g~dip~~K~v~~ALt~I~GIG~~~A~~Ic~~lgid~~~kv~~Lt~~qi~~l~~~i~-~~~i~~~L~~~~~~dI~rl   79 (114)
T d2gy9m1           1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA-KFVVEGDLRREISMSIKRL   79 (114)
T ss_dssp             CCCSSSCCCCSSBHHHHHTTSSSCCHHHHHHHHHHHTCCTTSBTTSCCHHHHHHHHHHHH-SSCCSHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHH
T ss_conf             912586689997888872315684899999999981989531357456999999999987-1055889999999989999


Q ss_pred             HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             73031001233179878770778776577776655
Q gi|254780239|r   82 MDLGCYRGLRHRRGLPVRGQRTHTNARTRKKFGKG  116 (122)
Q Consensus        82 ~~i~syrG~RH~~gLpvRGQRT~tn~rt~k~~~~~  116 (122)
                      ++|+||||+||.+|||||||||||||||+|+.+|+
T Consensus        80 ~~I~~yrG~RH~~gLpvRGQrT~tNart~k~~~k~  114 (114)
T d2gy9m1          80 MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKP  114 (114)
T ss_dssp             TTTTCHHHHHHHCCSCCCCCCSSSSCHHHHCSCCC
T ss_pred             HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             87500102210479987877787776366899998


SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Escherichia coli [TaxId: 562]