HHsearch alignment for GI: 254780240 and conserved domain: COG1223

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=96.59  E-value=0.0034  Score=40.72  Aligned_cols=42  Identities=31%  Similarity=0.641  Sum_probs=32.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEE--CHHHHHHHHHHHHH
Q ss_conf             6999878899967899999997189489--57899999996001
Q gi|254780240|r    2 RIIFLGPPGSGKGTQACRLSQKLNVPQL--STGDMLRAEVDRNT   43 (201)
Q Consensus         2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i--s~gdllR~~~~~~s   43 (201)
T Consensus       153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdga  196 (368)
T COG1223         153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA  196 (368)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf             16877899964879999872545785487116888887743598