HHsearch alignment for GI: 254780240 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=95.61 E-value=0.0093 Score=38.01 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=56.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-----------CHHHHH
Q ss_conf 99987889996789999999718948----9578999-9999600145666677641344554-----------103566
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDML-RAEVDRNTLLGKQVKGSMESGSLIS-----------DAIVNQ 66 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdll-R~~~~~~s~~g~~i~~~l~~G~lvp-----------d~ii~~ 66 (201)
T Consensus 41 ~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i--------------~~~~~~d~~e~d~as~~~v~~~r~ 106 (705)
T PRK05648 41 YLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREI--------------DEGRFVDLIEVDAASRTKVEDTRE 106 (705)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--------------HCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 650078988898999999998677899988978776004666--------------248977634451554478899999
Q ss_pred HHHHHHCCCC--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHH
Q ss_conf 5554202322--2-531786380111245788876665312522210355542------212566423
Q gi|254780240|r 67 VVCDRIRLPD--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRIQ 125 (201)
Q Consensus 67 li~~~l~~~~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~~ 125 (201)
T Consensus 107 ~~~~-~~~~p~~~~~kv~~idev--hmls~~~fnallktleepp~~v~f~~att~~~k~p~t~~src~ 171 (705)
T PRK05648 107 LLDN-VQYAPTRGRYKVYLIDEV--HMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCL 171 (705)
T ss_pred HHHH-CCCCCCCCCEEEEEEEHH--HHCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 9985-551776774579998426--5417999999987404797545999842873537589997664