HHsearch alignment for GI: 254780240 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=99.31 E-value=4.7e-12 Score=96.31 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=73.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~----------------p~w~~~~~~e~~~~~~~~~~~~----~ 60 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFS----------------SNWQERDDDDMIADISNFLLKQ----D 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEC----------------CCCEECCHHHHHHHHHHHHHCC----C
T ss_conf 9899988999868999999999879797970227888----------------9998888999999999998489----8
Q ss_pred EEECCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 786380-1112457888766653125222103555422125664233112
Q gi|254780240|r 81 FILDGY-PRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 81 ~ilDGF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
T Consensus 61 WIiDGny~~~~~~-----~rl~----~aD~iI~Ld~p~~~~l~rvikR~l 101 (171)
T PRK07261 61 WIIEGNYSNCLYE-----ERMA----EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred EEEECCCCCHHHH-----HHHH----HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 7994785124777-----6797----799999985849999999999999