HHsearch alignment for GI: 254780240 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=99.31  E-value=4.7e-12  Score=96.31  Aligned_cols=100  Identities=23%  Similarity=0.268  Sum_probs=73.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf             96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r    1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG   80 (201)
Q Consensus         1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g   80 (201)
T Consensus         1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~----------------p~w~~~~~~e~~~~~~~~~~~~----~   60 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFS----------------SNWQERDDDDMIADISNFLLKQ----D   60 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEC----------------CCCEECCHHHHHHHHHHHHHCC----C
T ss_conf             9899988999868999999999879797970227888----------------9998888999999999998489----8


Q ss_pred             EEECCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             786380-1112457888766653125222103555422125664233112
Q gi|254780240|r   81 FILDGY-PRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL  129 (201)
Q Consensus        81 ~ilDGF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~  129 (201)
T Consensus        61 WIiDGny~~~~~~-----~rl~----~aD~iI~Ld~p~~~~l~rvikR~l  101 (171)
T PRK07261         61 WIIEGNYSNCLYE-----ERMA----EADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             EEEECCCCCHHHH-----HHHH----HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             7994785124777-----6797----799999985849999999999999