HHsearch alignment for GI: 254780240 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.70 E-value=0.00022 Score=48.16 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHH
Q ss_conf 6999878899967899999997-----18948957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~ 37 (201)
T Consensus 103 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~ 143 (258)
T PRK09183 103 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 143 (258)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 67998999986899999999999987993999789999999