HHsearch alignment for GI: 254780240 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.03 E-value=0.003 Score=41.11 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=47.6
Q ss_pred EEEECCCCCCHHHHHHHHHH---HHCC--CEE----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCHHH----
Q ss_conf 99987889996789999999---7189--489----578999999960014566667764134455-----41035----
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ---KLNV--PQL----STGDMLRAEVDRNTLLGKQVKGSMESGSLI-----SDAIV---- 64 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~---~~~~--~~i----s~gdllR~~~~~~s~~g~~i~~~l~~G~lv-----pd~ii---- 64 (201)
T Consensus 269 tLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a----~~~G~dl~~~~~~G~l~i~~~~p~~~~~~e~ 344 (501)
T PRK09302 269 ILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNA----TSWGIDLEEMERKGLLKIICARPESTGLEDH 344 (501)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH----HHCCCCHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 999889998889999999999986599089999967999999999----9739984888748947999837000598999
Q ss_pred HHHHHHHHCCCCCCCEEEECCC
Q ss_conf 6655542023222531786380
Q gi|254780240|r 65 NQVVCDRIRLPDCDSGFILDGY 86 (201)
Q Consensus 65 ~~li~~~l~~~~~~~g~ilDGF 86 (201)
T Consensus 345 ~~~i~~~v~~~~-~~rVvIDsl 365 (501)
T PRK09302 345 LQIIKREIEEFK-PSRVAVDPL 365 (501)
T ss_pred HHHHHHHHHHCC-CCEEEECCH
T ss_conf 999999999729-989999580