HHsearch alignment for GI: 254780240 and conserved domain: PRK13976
>PRK13976 thymidylate kinase; Provisional.
Probab=99.27 E-value=3.4e-10 Score=84.66 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=91.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC----C-CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHH-----------
Q ss_conf 9699987889996789999999718----9-489578999999960014566667764134455-4103-----------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN----V-PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLI-SDAI----------- 63 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~----~-~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lv-pd~i----------- 63 (201)
T Consensus 1 mfIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~----trE--Pggt~~ge~IR~~ll~~~~~~~~te~lLf~A~R~eh 74 (202)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVL----TRE--PGGTSFNESVRGLLLSTKNLDKLSELLLFIAMRREH 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE----ECC--CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98999899999899999999999986069986898----379--999827899999971655799699999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEEC----------CCHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 566555420232225317863----------8011124--5788876665312522210355542212566423311232
Q gi|254780240|r 64 VNQVVCDRIRLPDCDSGFILD----------GYPRTVD--QAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEA 131 (201)
Q Consensus 64 i~~li~~~l~~~~~~~g~ilD----------GFPRt~~--Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~ 131 (201)
T Consensus 75 ~~~~I~PaL~~---g~~VI~DRy~~St~AYQg~~~gl~~~~i~~l~~~~~--~~~PDlt~~Ldi~~e~al~R~~~~~~e- 148 (202)
T PRK13976 75 FVKVILPALTQ---GKIVICDRFIDSTIAYQGYGCGIDLKLIRDLNDLVV--DIYPDITFILDIDINQSLSRADKNGYE- 148 (202)
T ss_pred HHHHHHHHHHC---CCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHC--CCCCCEEEEEECCHHHHHHCCCCCCHH-
T ss_conf 99998888866---998997485355788732267989999999999840--789887999837889997521468621-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHC-CCEE---EECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 333455656789899999999999975-6999999967-9799---99389988999999999999999
Q gi|254780240|r 132 IASEKSVRSDDKYDVFLKRIENYRKTI-LPLSSYYRDM-GCLY---IIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 132 ~~~~~~~R~DD~~e~i~~Rl~~y~~~~-~pv~~~y~~~-~~l~---~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
T Consensus 149 ----------~~~------~~-f~~kVr~~Yl~la~~~~~r~~~I~~ida~~~i~~I~~~~~~ii~~~~ 200 (202)
T PRK13976 149 ----------FMD------LE-FYARVRKGFQDIAKKNPHRCHLITCIDATDNINDINSVHLKIIKVLQ 200 (202)
T ss_pred ----------HCC------HH-HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----------205------99-99999999999998599878999703576798999999999999986