HHsearch alignment for GI: 254780240 and conserved domain: TIGR00017
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.71 E-value=5.3e-08 Score=70.91 Aligned_cols=169 Identities=24% Similarity=0.289 Sum_probs=91.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHH----H---HHHH------HHHHHHHH-------------HHHH
Q ss_conf 9699987889996789999999718948957899999----9---9600------14566667-------------7641
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA----E---VDRN------TLLGKQVK-------------GSME 54 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~----~---~~~~------s~~g~~i~-------------~~l~ 54 (201)
T Consensus 3 ~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v~~ 82 (223)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKVFL 82 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEEE
T ss_conf 63762377646557899999986295021443289999999998874068856848899998632604421577506887
Q ss_pred CCCCCCCHHHHHH-----------------HHHHHCCCCCC--CEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 3445541035665-----------------55420232225--3178638011124578887666531252221035554
Q gi|254780240|r 55 SGSLISDAIVNQV-----------------VCDRIRLPDCD--SGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 55 ~G~lvpd~ii~~l-----------------i~~~l~~~~~~--~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
T Consensus 83 nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dG--RDiGTvV-----fPn----A~~KiFLdA 151 (223)
T TIGR00017 83 NGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADG--RDIGTVV-----FPN----AELKIFLDA 151 (223)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEC--CCCCCEE-----CCC----CCCCEEECC
T ss_conf 07771322068358999998723777999999999998751589758845--5237446-----788----751324317
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHH----HHHHH-HHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHH
Q ss_conf 221256642331123233345565678989----99999-999999756999999967979999389-988999999999
Q gi|254780240|r 116 EDASMFKRIQVRVLEAIASEKSVRSDDKYD----VFLKR-IENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDS 189 (201)
Q Consensus 116 ~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e----~i~~R-l~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~ 189 (201)
T Consensus 152 sve~RA~RR~~~~~~~g--~----~~~~~~~L~~eik~RD~~D~~R~~~PL~----~A~DA~~ldt~~lsi~~V~~~~l~ 221 (223)
T TIGR00017 152 SVEERAKRRYKDLQIKG--D----NEVNLEELIAEIKRRDDVDSSREVAPLK----KAKDALYLDTSNLSIDEVVEKILE 221 (223)
T ss_pred CHHHHHHHHHHHHHHHC--C----CHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 87899887699988741--5----0147999999997514013323435554----556516885475348899999986
Q ss_pred H
Q ss_conf 9
Q gi|254780240|r 190 L 190 (201)
Q Consensus 190 ~ 190 (201)
T Consensus 222 ~ 222 (223)
T TIGR00017 222 K 222 (223)
T ss_pred H
T ss_conf 0