HHsearch alignment for GI: 254780240 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=96.81 E-value=0.019 Score=36.06 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=85.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-HHHHH----HHHH-HHHHHHHHHHCCCCCCCHH-----HHHHHHHH
Q ss_conf 999878899967899999997189489578999-99996----0014-5666677641344554103-----56655542
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-RAEVD----RNTL-LGKQVKGSMESGSLISDAI-----VNQVVCDR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-R~~~~----~~s~-~g~~i~~~l~~G~lvpd~i-----i~~li~~~ 71 (201)
T Consensus 2 i~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dild-p~e~y~~~~F~~~~~~~ 80 (307)
T TIGR00174 2 IVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILD-PSESYSAADFQTQALNA 80 (307)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCC-CCCCCCCHHHHHHHHHH
T ss_conf 67740885547789999887689578743502322378753578896875349815851347-12003708899999999
Q ss_pred HCC---------CCCCCEE----EECCCHHHHHH-HH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 023---------2225317----86380111245-78----887666531252221035554221256642331123233
Q gi|254780240|r 72 IRL---------PDCDSGF----ILDGYPRTVDQ-AK----SLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133 (201)
Q Consensus 72 l~~---------~~~~~g~----ilDGFPRt~~Q-a~----~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~ 133 (201)
T Consensus 81 ~~~i~~~Gkipl~VGGT~lY~k~l~~gl~~~~~~~~~~~r~~~~~~~~~~g~~~ly-~~L~~-------------~DP~~ 146 (307)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSAEDKLIRESLEILAERQGKSFLY-KELKK-------------VDPVA 146 (307)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH-HHHHH-------------CCHHH
T ss_conf 99998569834886857889999971477775556505799999999854915788-87775-------------07698
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----EEEECCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 3455656789899999999999975699999996797-----9999389-9889999999999999998
Q gi|254780240|r 134 SEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGC-----LYIIDGM-LDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 134 ~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~-----l~~Idg~-~~~~eV~~~I~~~l~~~~k 196 (201)
T Consensus 147 a~~i-hPN-D~~R~~RaLEvfY~TG~~~Se~~~~~~~~L~~~~v~~~l~~~~~e~L~~RI~~R~~~Ml~ 213 (307)
T TIGR00174 147 AAKI-HPN-DTRRVKRALEVFYATGKPISELFKEQKKELFYNIVQIGLAPLEREALHERIEQRVHEMLE 213 (307)
T ss_pred HHHH-CCC-CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9721-776-147898999988750786566640366654146677763005864567789999999998