HHsearch alignment for GI: 254780240 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.04 E-value=0.00051 Score=45.94 Aligned_cols=27 Identities=48% Similarity=0.757 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 699987889996789999999718948
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
T Consensus 154 NILLiGPTGSGKTLLAqTLA~~L~VPf 180 (452)
T TIGR00382 154 NILLIGPTGSGKTLLAQTLARILNVPF 180 (452)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 624546888526899999998738874