HHsearch alignment for GI: 254780240 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.69 E-value=3.2e-05 Score=53.50 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-EECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 69998788999678999999971894-8957899999996001456666776413445
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP-QLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~-~is~gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
T Consensus 32 H~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L----~kPgDlaaiLt~-L~~gDV 84 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----EKPGDLAAILTN-LEEGDV 84 (305)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCC----CCHHHHHHHHHH-CCCCCE
T ss_conf 16631756874678999999983893267406755----475789999970-568963