HHsearch alignment for GI: 254780240 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=94.20  E-value=0.047  Score=33.61  Aligned_cols=26  Identities=27%  Similarity=0.526  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             99987889996789999999718948
Q gi|254780240|r    3 IIFLGPPGSGKGTQACRLSQKLNVPQ   28 (201)
Q Consensus         3 I~i~G~PGsGK~T~a~~la~~~~~~~   28 (201)
T Consensus       243 ~ll~GPPGtGktllaka~ane~~a~f  268 (980)
T TIGR01243       243 VLLYGPPGTGKTLLAKAVANEAGAYF  268 (980)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf             58755898617899999875305517