HHsearch alignment for GI: 254780240 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=95.05 E-value=0.017 Score=36.41 Aligned_cols=18 Identities=44% Similarity=0.776 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999878899967899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRL 20 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~l 20 (201)
T Consensus 245 ~li~GGPGTGKTTTv~~L 262 (753)
T TIGR01447 245 SLITGGPGTGKTTTVARL 262 (753)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 899879889778999999