HHsearch alignment for GI: 254780240 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.26 E-value=0.003 Score=41.13 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=18.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98788999678999999971894
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
T Consensus 496 IvGpSGSGKSTLTKL~Q-RLYtP 517 (703)
T TIGR01846 496 IVGPSGSGKSTLTKLLQ-RLYTP 517 (703)
T ss_pred EECCCCCCHHHHHHHHH-HHCCC
T ss_conf 87278986789999988-61488