HHsearch alignment for GI: 254780240 and conserved domain: TIGR02173
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=99.54 E-value=3.7e-14 Score=109.52 Aligned_cols=165 Identities=25% Similarity=0.286 Sum_probs=101.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCC
Q ss_conf 969998788999678999999971894895789999999-60014566667764134455410356655542023-2225
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV-DRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRL-PDCD 78 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~-~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~-~~~~ 78 (201)
T Consensus 1 M~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~i-RelA~~~Gl----dl~E~~~ae---e~~eIDk~iD~~~~E~A~~~ 72 (173)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDI-RELAEKMGL----DLAESKYAE---ENPEIDKKIDRRIREIAEKE 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCHH-HHHHHHCCC----CHHHHHHHC---CCCCCCHHHHHHHHHHHCCC
T ss_conf 9788735896864789999998639831202007-889864298----877734430---58631167537885543048
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHH
Q ss_conf 317863801112457888766653-12522210355542212566423311232333---45565678989999999999
Q gi|254780240|r 79 SGFILDGYPRTVDQAKSLHAFISN-MDCAIDAVIELRVEDASMFKRIQVRVLEAIAS---EKSVRSDDKYDVFLKRIENY 154 (201)
Q Consensus 79 ~g~ilDGFPRt~~Qa~~l~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~---~~~~R~DD~~e~i~~Rl~~y 154 (201)
T Consensus 73 ~nvvlEs---------rlagW~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k~~~~A~~~~~~----REe~e~rRy~~i 139 (173)
T TIGR02173 73 KNVVLES---------RLAGWILKKNGEYADVKIYLKAPLEVRARRIAKRENKDLTVALKEIIE----REESEKRRYKEI 139 (173)
T ss_pred CCEEEEE---------HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHHH
T ss_conf 9668852---------054331157889675678860883332433211368898999999999----887622345665
Q ss_pred HHHHHHHHHHHHHCCC-EEEECCCC-CHHHHHHHHHHHHH
Q ss_conf 9975699999996797-99993899-88999999999999
Q gi|254780240|r 155 RKTILPLSSYYRDMGC-LYIIDGML-DMDEVSRSIDSLLV 192 (201)
Q Consensus 155 ~~~~~pv~~~y~~~~~-l~~Idg~~-~~~eV~~~I~~~l~ 192 (201)
T Consensus 140 Yg-----IDi-dDlsiYDLvinT~~~~~~~v~~iv~~ald 173 (173)
T TIGR02173 140 YG-----IDI-DDLSIYDLVINTSNLDVDEVSDIVLDALD 173 (173)
T ss_pred CC-----CCC-CCCEEEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 25-----023-43222200334476681269999998609