HHsearch alignment for GI: 254780240 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.32  E-value=0.00035  Score=46.93  Aligned_cols=105  Identities=19%  Similarity=0.312  Sum_probs=63.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-----HHHHHHHHHH-----------H-HHHHHHHHCCCCCCCHHHHH
Q ss_conf             99878899967899999997189489578999-----9999600145-----------6-66677641344554103566
Q gi|254780240|r    4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-----RAEVDRNTLL-----------G-KQVKGSMESGSLISDAIVNQ   66 (201)
Q Consensus         4 ~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-----R~~~~~~s~~-----------g-~~i~~~l~~G~lvpd~ii~~   66 (201)
T Consensus        40 LF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P------  112 (363)
T TIGR02397        40 LFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIRELRENVKYAP------  112 (363)
T ss_pred             EECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC------
T ss_conf             502859976355899999986588-7877877775022776528986668864865687889999987303687------


Q ss_pred             HHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHH
Q ss_conf             55542023222531786380111245788876665312522210355542------21256642
Q gi|254780240|r   67 VVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRI  124 (201)
Q Consensus        67 li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~  124 (201)
T Consensus       113 -------~~~kYKvYIIDEV--HMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRC  167 (363)
T TIGR02397       113 -------SKGKYKVYIIDEV--HMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRC  167 (363)
T ss_pred             -------CCCCCCEEEEECC--CCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEEC
T ss_conf             -------5544335887323--028656899987652279876288873487112055402100