HHsearch alignment for GI: 254780240 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.32 E-value=0.00035 Score=46.93 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=63.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-----HHHHHHHHHH-----------H-HHHHHHHHCCCCCCCHHHHH
Q ss_conf 99878899967899999997189489578999-----9999600145-----------6-66677641344554103566
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-----RAEVDRNTLL-----------G-KQVKGSMESGSLISDAIVNQ 66 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-----R~~~~~~s~~-----------g-~~i~~~l~~G~lvpd~ii~~ 66 (201)
T Consensus 40 LF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P------ 112 (363)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIRELRENVKYAP------ 112 (363)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC------
T ss_conf 502859976355899999986588-7877877775022776528986668864865687889999987303687------
Q ss_pred HHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHH
Q ss_conf 55542023222531786380111245788876665312522210355542------21256642
Q gi|254780240|r 67 VVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRI 124 (201)
Q Consensus 67 li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~ 124 (201)
T Consensus 113 -------~~~kYKvYIIDEV--HMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRC 167 (363)
T TIGR02397 113 -------SKGKYKVYIIDEV--HMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRC 167 (363)
T ss_pred -------CCCCCCEEEEECC--CCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEEC
T ss_conf -------5544335887323--028656899987652279876288873487112055402100