HHsearch alignment for GI: 254780240 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=97.54  E-value=0.00016  Score=49.12  Aligned_cols=52  Identities=21%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHH---HC--CCEECH----HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999878899967899999997---18--948957----899999996001456666776413445
Q gi|254780240|r    3 IIFLGPPGSGKGTQACRLSQK---LN--VPQLST----GDMLRAEVDRNTLLGKQVKGSMESGSL   58 (201)
Q Consensus         3 I~i~G~PGsGK~T~a~~la~~---~~--~~~is~----gdllR~~~~~~s~~g~~i~~~l~~G~l   58 (201)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~----~~~g~d~~~~~~~g~l   62 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA----ESLGWDLERLEDEGLL   62 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----HHCCCCHHHHHHCCCE
T ss_conf             158768999999999999999987699789999507999999999----9839985898645856