HHsearch alignment for GI: 254780240 and conserved domain: cd02026
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.15 E-value=0.012 Score=37.44 Aligned_cols=143 Identities=22% Similarity=0.236 Sum_probs=69.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC---CEECHHHHH---HHHHHH--HH----------HHHHHHHHHHHCCCCCCCHHH
Q ss_conf 999878899967899999997189---489578999---999960--01----------456666776413445541035
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV---PQLSTGDML---RAEVDR--NT----------LLGKQVKGSMESGSLISDAIV 64 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~---~~is~gdll---R~~~~~--~s----------~~g~~i~~~l~~G~lvpd~ii 64 (201)
T Consensus 2 IgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r~~~~~t~~~P~And~dll~~~l~-~Lk~Gk~i~~PvY 80 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLK-ALKEGQAIEKPIY 80 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCCCCC
T ss_conf 899788878699999999998584876999657778899899987187768975234999999999-9985995343222
Q ss_pred HHHHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 6655542023---222531786380111245788876665312522210355542212566423311232333455656-
Q gi|254780240|r 65 NQVVCDRIRL---PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRS- 140 (201)
Q Consensus 65 ~~li~~~l~~---~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~- 140 (201)
T Consensus 81 -dh~tg~~~~~e~i~p~diII~EGLh~l~~------~~lrd---l~DLkIfVD~d~dlr~~rKI~RD~~ER-----GyS~ 145 (273)
T cd02026 81 -NHVTGLIDPPELIKPTKIVVIEGLHPLYD------ERVRE---LLDFSVYLDISDEVKFAWKIQRDMAER-----GHSL 145 (273)
T ss_pred -CCCCCCCCCCEEECCCCEEEEECEECCCC------HHHHH---HHCEEEEECCCHHHHHHHHHHHHHHHH-----CCCH
T ss_conf -14589657756506874799922000266------88986---607468856876479999877667664-----8899
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 789899999999999975699
Q gi|254780240|r 141 DDKYDVFLKRIENYRKTILPL 161 (201)
Q Consensus 141 DD~~e~i~~Rl~~y~~~~~pv 161 (201)
T Consensus 146 E~V~~~I~rR~pDy~~yI~PQ 166 (273)
T cd02026 146 EDVLASIEARKPDFEAYIDPQ 166 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999986047889750757