HHsearch alignment for GI: 254780240 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.94 E-value=1e-07 Score=69.12 Aligned_cols=75 Identities=24% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC--CHHH
Q ss_conf 52221035554221256642331123233345565678989999999999997569999999679799993899--8899
Q gi|254780240|r 105 CAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGML--DMDE 182 (201)
Q Consensus 105 ~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~--~~~e 182 (201)
T Consensus 141 ~~PdlvIYL~a~pe~~~~RI~kRgR~~E~~---I----~~~-YL~~L~~~ye~~--fl~~~~~~~~vlv~D~~~~~~~~~ 210 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKRIKKRGDPHEMK---V----TSA-YLQDIENAYKKT--FLPEISEHSEVLQYDWTEAGDTEK 210 (219)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCHHHCC---C----CHH-HHHHHHHHHHHH--HHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 999989998399999999999839475408---9----999-999999999999--999886589679987665665999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780240|r 183 VSRSIDS 189 (201)
Q Consensus 183 V~~~I~~ 189 (201)
T Consensus 211 v~~~~e~ 217 (219)
T cd02030 211 VVEDIEY 217 (219)
T ss_pred HHHHHHH
T ss_conf 9999984