HHsearch alignment for GI: 254780240 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.76 E-value=0.0013 Score=43.28 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999