HHsearch alignment for GI: 254780240 and conserved domain: cd04152
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.94 E-value=0.05 Score=33.44 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 969998788999678999999
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la 21 (201)
T Consensus 4 ~kIvilG~~~~GKTsil~r~~ 24 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLK 24 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999998899999996