Query gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 201
No_of_seqs 112 out of 3396
Neff 7.6
Searched_HMMs 39220
Date Tue May 24 00:47:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780240.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01351 adk adenylate kinase 100.0 0 0 435.6 15.7 191 2-192 1-232 (232)
2 PRK13808 adenylate kinase; Pro 100.0 0 0 409.2 18.7 196 1-196 1-196 (297)
3 PRK00279 adk adenylate kinase; 100.0 0 0 397.1 18.8 194 1-194 1-215 (215)
4 TIGR01360 aden_kin_iso1 adenyl 100.0 0 0 388.5 12.6 183 2-194 4-191 (191)
5 PRK02496 adk adenylate kinase; 100.0 0 0 379.3 18.6 183 1-193 2-184 (185)
6 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 0 0 387.4 11.0 183 3-191 2-188 (189)
7 PTZ00088 adenylate kinase 1; P 100.0 0 0 358.2 16.8 183 1-188 1-222 (225)
8 cd01428 ADK Adenylate kinase ( 100.0 0 0 345.5 15.8 181 2-183 1-194 (194)
9 KOG3079 consensus 100.0 0 0 339.6 16.5 182 3-193 11-193 (195)
10 pfam00406 ADK Adenylate kinase 100.0 0 0 339.9 14.5 165 5-170 1-186 (186)
11 KOG3078 consensus 100.0 2.2E-43 0 292.8 14.6 190 1-195 16-226 (235)
12 COG0563 Adk Adenylate kinase a 100.0 4.6E-43 0 290.7 11.4 177 1-191 1-177 (178)
13 PRK01184 hypothetical protein; 99.7 9.7E-16 2.5E-20 119.4 15.2 173 1-198 1-182 (183)
14 PRK08356 hypothetical protein; 99.7 7.6E-15 1.9E-19 113.8 14.8 161 1-195 6-194 (195)
15 PRK03839 putative kinase; Prov 99.6 9.4E-14 2.4E-18 106.9 13.8 151 1-194 1-154 (180)
16 PRK13973 thymidylate kinase; P 99.5 6.8E-13 1.7E-17 101.6 15.9 176 3-199 6-212 (216)
17 TIGR02173 cyt_kin_arch cytidyl 99.5 3.7E-14 9.3E-19 109.5 9.0 165 1-192 1-173 (173)
18 COG1102 Cmk Cytidylate kinase 99.5 3.5E-13 9E-18 103.3 13.7 168 1-198 1-177 (179)
19 PRK00698 tmk thymidylate kinas 99.5 1.7E-13 4.2E-18 105.4 10.4 169 1-193 4-202 (204)
20 cd01672 TMPK Thymidine monopho 99.5 1.8E-12 4.5E-17 98.9 14.0 172 1-192 1-199 (200)
21 PRK13974 thymidylate kinase; P 99.5 2E-12 5.2E-17 98.6 13.0 172 3-196 6-209 (212)
22 PRK04182 cytidylate kinase; Pr 99.4 3.8E-13 9.7E-18 103.2 8.4 170 1-198 1-177 (178)
23 pfam02223 Thymidylate_kin Thym 99.4 1.5E-12 3.9E-17 99.3 10.3 163 5-187 1-186 (186)
24 PRK07933 thymidylate kinase; V 99.4 1.1E-11 2.9E-16 93.9 14.5 176 1-192 1-212 (213)
25 PRK13975 thymidylate kinase; P 99.4 8.8E-12 2.3E-16 94.6 13.3 174 3-194 5-193 (198)
26 COG1936 Predicted nucleotide k 99.4 5.5E-12 1.4E-16 95.9 11.9 152 1-195 1-158 (180)
27 PRK08118 topology modulation p 99.4 1.6E-12 4.1E-17 99.2 9.1 98 2-129 3-101 (167)
28 PRK00131 aroK shikimate kinase 99.4 2.2E-11 5.7E-16 92.1 13.8 165 1-196 5-174 (175)
29 PRK06217 hypothetical protein; 99.4 5.8E-12 1.5E-16 95.7 10.4 170 1-195 2-181 (185)
30 COG0125 Tmk Thymidylate kinase 99.4 1.8E-11 4.7E-16 92.6 11.7 176 1-196 4-206 (208)
31 PRK03731 aroL shikimate kinase 99.3 2.2E-11 5.5E-16 92.1 11.9 159 2-193 4-170 (172)
32 PRK05057 aroK shikimate kinase 99.3 5.2E-11 1.3E-15 89.8 13.5 161 2-193 6-171 (172)
33 PRK13946 shikimate kinase; Pro 99.3 1.4E-10 3.6E-15 87.0 14.5 165 2-198 22-191 (195)
34 PRK00625 shikimate kinase; Pro 99.3 1E-11 2.6E-16 94.2 8.5 168 1-191 1-171 (173)
35 PRK07261 topology modulation p 99.3 4.7E-12 1.2E-16 96.3 6.7 100 1-129 1-101 (171)
36 PRK13947 shikimate kinase; Pro 99.3 1.6E-10 4E-15 86.7 14.2 162 2-195 3-169 (171)
37 PRK13976 thymidylate kinase; P 99.3 3.4E-10 8.6E-15 84.7 14.5 166 1-195 1-200 (202)
38 PRK09825 idnK D-gluconate kina 99.3 7.6E-11 1.9E-15 88.7 10.9 165 3-201 6-176 (176)
39 TIGR00041 DTMP_kinase thymidyl 99.3 5E-11 1.3E-15 89.8 9.9 169 1-187 3-211 (211)
40 KOG3347 consensus 99.3 5.9E-11 1.5E-15 89.4 10.1 155 1-197 8-173 (176)
41 PRK13948 shikimate kinase; Pro 99.2 5E-10 1.3E-14 83.6 14.2 162 2-196 12-178 (182)
42 PRK13949 shikimate kinase; Pro 99.2 5.9E-10 1.5E-14 83.1 14.2 162 2-191 3-169 (169)
43 COG0283 Cmk Cytidylate kinase 99.2 5E-11 1.3E-15 89.9 6.5 169 2-192 6-218 (222)
44 COG0237 CoaE Dephospho-CoA kin 99.2 4.6E-10 1.2E-14 83.8 10.9 169 3-199 5-198 (201)
45 PRK00081 coaE dephospho-CoA ki 99.2 1.4E-09 3.5E-14 80.8 12.8 168 2-197 4-198 (199)
46 PRK00023 cmk cytidylate kinase 99.2 1.1E-10 2.7E-15 87.8 6.9 174 3-194 7-222 (225)
47 COG0703 AroK Shikimate kinase 99.1 6.4E-10 1.6E-14 82.9 10.7 160 1-195 3-170 (172)
48 PRK13477 bifunctional pantoate 99.1 2.2E-10 5.7E-15 85.8 8.1 175 3-194 287-504 (512)
49 PRK11860 bifunctional 3-phosph 99.1 1E-10 2.7E-15 87.9 6.3 169 3-193 445-655 (662)
50 PRK04040 adenylate kinase; Pro 99.1 1E-08 2.6E-13 75.4 14.7 165 1-192 2-188 (189)
51 cd01673 dNK Deoxyribonucleosid 99.1 5.3E-09 1.3E-13 77.2 12.1 159 3-178 2-186 (193)
52 PRK12269 bifunctional cytidyla 99.0 4.2E-10 1.1E-14 84.0 6.3 35 3-37 37-71 (863)
53 PRK09518 bifunctional cytidyla 99.0 2.4E-09 6.2E-14 79.3 9.4 171 3-195 7-229 (714)
54 PRK11545 gntK gluconate kinase 99.0 4.2E-09 1.1E-13 77.8 9.8 156 3-192 11-172 (177)
55 PRK08154 anaerobic benzoate ca 99.0 1E-08 2.6E-13 75.3 11.8 161 2-194 135-302 (304)
56 cd02020 CMPK Cytidine monophos 99.0 6.8E-10 1.7E-14 82.8 5.1 101 3-126 2-102 (147)
57 cd00464 SK Shikimate kinase (S 98.9 5.2E-09 1.3E-13 77.2 8.5 108 2-127 1-112 (154)
58 cd02030 NDUO42 NADH:Ubiquinone 98.9 1E-07 2.6E-12 69.1 15.0 75 105-189 141-217 (219)
59 PRK13951 bifunctional shikimat 98.9 3.2E-08 8.2E-13 72.3 12.1 154 1-190 1-159 (488)
60 cd02021 GntK Gluconate kinase 98.8 1.2E-08 3.2E-13 74.8 7.7 115 3-130 2-121 (150)
61 KOG3220 consensus 98.8 4.2E-08 1.1E-12 71.5 9.6 173 1-197 1-198 (225)
62 pfam01202 SKI Shikimate kinase 98.8 3.5E-07 9E-12 65.7 12.5 152 9-191 1-157 (158)
63 KOG3327 consensus 98.7 8.8E-08 2.2E-12 69.5 9.0 173 2-196 7-198 (208)
64 TIGR00017 cmk cytidylate kinas 98.7 5.3E-08 1.3E-12 70.9 7.3 169 1-190 3-222 (223)
65 PRK10078 ribose 1,5-bisphospho 98.7 1.1E-07 2.9E-12 68.8 8.7 164 3-197 5-180 (184)
66 PRK08233 hypothetical protein; 98.7 5.9E-07 1.5E-11 64.3 11.7 166 3-193 6-177 (182)
67 COG1428 Deoxynucleoside kinase 98.7 8.2E-08 2.1E-12 69.7 6.8 116 1-130 5-150 (216)
68 pfam01121 CoaE Dephospho-CoA k 98.6 3.9E-07 1E-11 65.4 9.4 153 1-182 1-179 (179)
69 PRK03333 coaE dephospho-CoA ki 98.6 8.7E-07 2.2E-11 63.3 10.8 163 1-191 1-190 (394)
70 pfam06414 Zeta_toxin Zeta toxi 98.6 2.2E-07 5.7E-12 67.0 7.6 120 3-130 15-141 (191)
71 PRK04220 2-phosphoglycerate ki 98.6 1.6E-06 4.1E-11 61.6 11.3 163 3-189 95-286 (306)
72 cd02022 DPCK Dephospho-coenzym 98.6 1.7E-07 4.4E-12 67.7 6.1 116 3-128 2-143 (179)
73 TIGR03263 guanyl_kin guanylate 98.5 1.3E-06 3.4E-11 62.1 9.6 163 3-192 4-179 (180)
74 COG2019 AdkA Archaeal adenylat 98.5 7.7E-06 2E-10 57.3 13.5 164 2-193 6-188 (189)
75 TIGR01313 therm_gnt_kin carboh 98.4 2.9E-07 7.5E-12 66.2 4.7 158 3-192 1-174 (175)
76 PRK00300 gmk guanylate kinase; 98.4 2.1E-06 5.3E-11 60.9 8.9 163 3-193 10-187 (208)
77 PRK05416 hypothetical protein; 98.4 2.4E-05 6.1E-10 54.3 13.9 148 1-192 6-160 (292)
78 PRK06696 uridine kinase; Valid 98.4 7.8E-07 2E-11 63.6 6.2 144 2-167 28-199 (227)
79 KOG3354 consensus 98.4 1.4E-06 3.6E-11 62.0 6.8 161 3-192 15-187 (191)
80 COG0194 Gmk Guanylate kinase [ 98.3 6.1E-06 1.6E-10 58.0 9.8 166 3-197 7-186 (191)
81 PRK05480 uridine kinase; Provi 98.3 1.2E-05 3.1E-10 56.1 10.8 169 3-194 9-205 (209)
82 PRK06762 hypothetical protein; 98.3 1.1E-05 2.7E-10 56.5 10.1 153 2-192 3-163 (166)
83 COG3265 GntK Gluconate kinase 98.3 7.2E-06 1.8E-10 57.5 9.1 153 6-193 1-159 (161)
84 smart00072 GuKc Guanylate kina 98.3 8.1E-06 2.1E-10 57.2 8.7 165 2-193 3-182 (184)
85 pfam00625 Guanylate_kin Guanyl 98.2 8.5E-06 2.2E-10 57.1 8.4 166 1-193 1-181 (182)
86 COG4088 Predicted nucleotide k 98.2 7.1E-06 1.8E-10 57.5 7.3 109 1-127 1-122 (261)
87 PRK09270 frcK putative fructos 98.2 7.9E-06 2E-10 57.3 7.4 146 3-167 37-211 (230)
88 PRK12339 2-phosphoglycerate ki 98.2 2.1E-05 5.4E-10 54.6 9.4 169 3-192 5-196 (197)
89 TIGR02322 phosphon_PhnN phosph 98.1 9.4E-05 2.4E-09 50.5 12.2 159 3-193 4-182 (183)
90 TIGR03574 selen_PSTK L-seryl-t 98.1 2.6E-05 6.7E-10 54.0 9.3 104 3-128 2-117 (249)
91 COG2074 2-phosphoglycerate kin 98.1 0.00015 3.7E-09 49.3 12.9 165 3-193 91-287 (299)
92 cd02027 APSK Adenosine 5'-phos 98.1 9.8E-06 2.5E-10 56.7 6.9 104 3-123 2-113 (149)
93 COG0645 Predicted kinase [Gene 98.1 1.5E-05 3.9E-10 55.5 7.8 121 3-130 4-127 (170)
94 PRK05541 adenylylsulfate kinas 98.1 9.9E-06 2.5E-10 56.7 6.5 150 3-193 10-172 (176)
95 CHL00181 cbbX CbbX; Provisiona 98.1 4.7E-06 1.2E-10 58.7 4.8 89 1-92 60-175 (287)
96 cd02023 UMPK Uridine monophosp 98.1 2.6E-05 6.6E-10 54.0 8.2 141 3-165 2-166 (198)
97 pfam03668 ATP_bind_2 P-loop AT 98.1 0.00026 6.5E-09 47.8 13.3 146 1-192 1-155 (284)
98 COG1660 Predicted P-loop-conta 98.1 0.00022 5.6E-09 48.2 12.7 147 1-192 1-156 (286)
99 PRK12338 hypothetical protein; 98.1 5.1E-05 1.3E-09 52.2 9.4 39 3-41 7-45 (320)
100 pfam01583 APS_kinase Adenylyls 98.0 1.1E-05 2.9E-10 56.3 6.0 104 3-123 5-116 (157)
101 pfam01591 6PF2K 6-phosphofruct 98.0 4.2E-05 1.1E-09 52.7 7.6 164 3-179 16-198 (223)
102 pfam07931 CPT Chloramphenicol 97.9 3.9E-05 9.9E-10 52.9 7.0 158 2-191 2-173 (174)
103 PRK00889 adenylylsulfate kinas 97.9 3.3E-05 8.5E-10 53.4 6.6 101 3-123 7-116 (175)
104 TIGR00763 lon ATP-dependent pr 97.9 7E-06 1.8E-10 57.6 2.8 58 3-60 453-519 (941)
105 COG0572 Udk Uridine kinase [Nu 97.9 3.8E-05 9.7E-10 53.0 6.1 140 5-165 13-175 (218)
106 cd00227 CPT Chloramphenicol (C 97.8 0.00014 3.5E-09 49.5 8.5 161 2-191 3-174 (175)
107 PRK03846 adenylylsulfate kinas 97.8 7E-05 1.8E-09 51.3 7.0 105 2-124 26-139 (198)
108 cd02025 PanK Pantothenate kina 97.8 5.3E-05 1.3E-09 52.1 5.8 122 3-129 2-151 (220)
109 KOG3877 consensus 97.8 0.0003 7.7E-09 47.4 9.6 122 3-128 74-239 (393)
110 PRK07667 uridine kinase; Provi 97.8 0.00019 4.9E-09 48.6 8.3 134 3-166 17-176 (190)
111 PTZ00301 uridine kinase; Provi 97.8 9.1E-05 2.3E-09 50.6 6.6 169 3-193 6-209 (210)
112 PRK05703 flhF flagellar biosyn 97.7 3.5E-05 8.9E-10 53.2 4.2 104 3-115 213-328 (412)
113 PRK12723 flagellar biosynthesi 97.7 3.9E-05 1E-09 52.9 4.3 94 3-104 177-284 (388)
114 PRK09183 transposase/IS protei 97.7 0.00022 5.7E-09 48.2 7.8 36 2-37 103-143 (258)
115 TIGR00635 ruvB Holliday juncti 97.7 3.2E-05 8E-10 53.5 3.3 52 2-58 32-84 (305)
116 PRK13341 recombination factor 97.6 5.4E-05 1.4E-09 52.0 3.9 28 2-29 54-81 (726)
117 PRK13342 recombination factor 97.6 6.3E-05 1.6E-09 51.6 4.2 29 2-30 39-67 (417)
118 PRK04195 replication factor C 97.6 6.5E-05 1.7E-09 51.5 4.0 27 3-29 43-69 (403)
119 COG4639 Predicted kinase [Gene 97.6 0.0002 5.2E-09 48.4 6.5 127 3-153 5-132 (168)
120 COG1618 Predicted nucleotide k 97.6 1.1E-05 2.8E-10 56.4 -0.2 50 1-50 6-56 (179)
121 cd02024 NRK1 Nicotinamide ribo 97.6 5E-05 1.3E-09 52.2 3.0 117 3-129 2-153 (187)
122 pfam05496 RuvB_N Holliday junc 97.6 7.1E-05 1.8E-09 51.3 3.7 26 3-28 53-78 (234)
123 PRK06526 transposase; Provisio 97.6 0.00033 8.5E-09 47.1 7.1 58 2-59 100-164 (254)
124 cd00009 AAA The AAA+ (ATPases 97.6 0.00019 4.9E-09 48.6 5.7 36 2-37 21-61 (151)
125 pfam00004 AAA ATPase family as 97.5 6.5E-05 1.6E-09 51.6 3.2 33 3-35 1-35 (131)
126 PRK08181 transposase; Validate 97.5 0.00041 1.1E-08 46.5 7.3 53 2-54 108-167 (269)
127 cd01124 KaiC KaiC is a circadi 97.5 0.00016 4E-09 49.1 5.1 52 3-58 2-62 (187)
128 PRK13768 GTPase; Provisional 97.5 8.7E-05 2.2E-09 50.7 3.4 22 3-24 5-26 (253)
129 COG3709 Uncharacterized compon 97.5 0.0045 1.1E-07 40.0 11.9 151 3-193 8-182 (192)
130 pfam00485 PRK Phosphoribulokin 97.5 0.00014 3.5E-09 49.5 4.0 115 3-129 2-151 (196)
131 KOG0730 consensus 97.5 0.00056 1.4E-08 45.7 7.1 119 3-127 471-613 (693)
132 CHL00195 ycf46 Ycf46; Provisio 97.4 0.00021 5.4E-09 48.3 4.6 35 3-37 262-298 (491)
133 PRK05563 DNA polymerase III su 97.4 0.00013 3.3E-09 49.6 3.5 114 3-124 41-170 (541)
134 PRK06547 hypothetical protein; 97.4 0.00018 4.5E-09 48.8 4.1 115 1-127 15-138 (184)
135 pfam01695 IstB IstB-like ATP b 97.4 0.00076 1.9E-08 44.8 7.3 37 2-38 49-90 (178)
136 PRK13695 putative NTPase; Prov 97.4 0.00015 3.9E-09 49.2 3.6 25 1-25 4-28 (174)
137 PRK03992 proteasome-activating 97.4 0.00018 4.6E-09 48.8 3.7 35 3-37 169-205 (390)
138 pfam03976 PPK2 Polyphosphate k 97.4 0.0035 8.9E-08 40.7 10.2 182 3-194 34-224 (229)
139 PRK00080 ruvB Holliday junctio 97.4 0.00032 8.2E-09 47.2 4.9 34 2-35 53-87 (328)
140 PRK04328 hypothetical protein; 97.4 0.00038 9.7E-09 46.7 5.2 56 3-58 27-87 (250)
141 pfam08433 KTI12 Chromatin asso 97.3 0.00063 1.6E-08 45.4 6.1 110 3-128 2-118 (266)
142 TIGR00368 TIGR00368 Mg chelata 97.3 0.00013 3.2E-09 49.7 2.4 32 2-35 215-246 (505)
143 TIGR02397 dnaX_nterm DNA polym 97.3 0.00035 9E-09 46.9 4.6 105 4-124 40-167 (363)
144 TIGR03575 selen_PSTK_euk L-ser 97.3 0.00081 2.1E-08 44.7 6.5 36 4-39 3-44 (340)
145 KOG0744 consensus 97.3 0.00017 4.4E-09 48.9 3.1 36 2-37 178-225 (423)
146 PRK12724 flagellar biosynthesi 97.3 0.00037 9.4E-09 46.8 4.7 93 3-103 226-328 (432)
147 PRK10787 DNA-binding ATP-depen 97.3 0.00019 4.9E-09 48.6 3.1 58 3-60 352-418 (784)
148 PRK12377 putative replication 97.3 0.00071 1.8E-08 45.0 5.9 36 2-37 103-143 (248)
149 TIGR02881 spore_V_K stage V sp 97.3 0.00023 6E-09 48.0 3.3 116 2-122 44-182 (261)
150 KOG0733 consensus 97.3 0.0014 3.7E-08 43.1 7.3 27 4-30 227-253 (802)
151 pfam06745 KaiC KaiC. This fami 97.2 0.00055 1.4E-08 45.7 5.0 56 3-58 22-83 (231)
152 pfam03215 Rad17 Rad17 cell cyc 97.2 0.00037 9.5E-09 46.8 4.1 28 2-29 46-74 (490)
153 COG2256 MGS1 ATPase related to 97.2 0.00029 7.3E-09 47.5 3.3 27 3-29 51-77 (436)
154 COG2255 RuvB Holliday junction 97.2 0.00053 1.4E-08 45.8 4.6 34 2-35 54-88 (332)
155 cd02019 NK Nucleoside/nucleoti 97.2 0.00015 3.8E-09 49.3 1.8 23 2-24 1-23 (69)
156 TIGR02640 gas_vesic_GvpN gas v 97.2 0.00016 4.1E-09 49.0 1.5 87 3-95 24-123 (265)
157 TIGR01242 26Sp45 26S proteasom 97.1 0.00052 1.3E-08 45.9 4.0 46 3-48 159-206 (364)
158 PRK07133 DNA polymerase III su 97.1 0.0011 2.8E-08 43.8 5.6 105 3-116 43-155 (718)
159 PRK07429 phosphoribulokinase; 97.1 0.00074 1.9E-08 44.9 4.7 115 4-129 12-147 (331)
160 KOG0736 consensus 97.1 0.0012 3.1E-08 43.6 5.7 35 3-37 708-744 (953)
161 PRK09302 circadian clock prote 97.1 0.00084 2.1E-08 44.6 4.9 84 3-87 27-133 (501)
162 COG0466 Lon ATP-dependent Lon 97.1 0.00039 1E-08 46.6 3.1 58 3-60 353-419 (782)
163 PRK05896 DNA polymerase III su 97.1 0.0011 2.7E-08 44.0 5.2 108 3-116 41-156 (613)
164 PRK07764 DNA polymerase III su 97.1 0.0015 3.9E-08 42.9 6.0 118 3-127 40-170 (775)
165 PRK06305 DNA polymerase III su 97.1 0.0011 2.8E-08 43.8 5.2 106 3-115 42-157 (462)
166 PRK06674 DNA polymerase III su 97.1 0.00094 2.4E-08 44.3 4.9 106 3-116 41-156 (563)
167 TIGR02903 spore_lon_C ATP-depe 97.1 0.00041 1E-08 46.5 2.9 22 2-23 178-199 (616)
168 pfam07728 AAA_5 AAA domain (dy 97.1 0.00049 1.3E-08 46.0 3.3 28 2-29 1-29 (139)
169 TIGR00602 rad24 checkpoint pro 97.1 0.00042 1.1E-08 46.4 2.8 26 3-28 120-146 (670)
170 PRK12402 replication factor C 97.1 0.00058 1.5E-08 45.6 3.5 25 2-26 38-62 (337)
171 TIGR00382 clpX ATP-dependent C 97.0 0.00051 1.3E-08 45.9 3.1 27 2-28 154-180 (452)
172 smart00382 AAA ATPases associa 97.0 0.00059 1.5E-08 45.5 3.4 26 2-27 4-29 (148)
173 PRK09302 circadian clock prote 97.0 0.003 7.6E-08 41.1 7.0 79 3-86 269-365 (501)
174 pfam07726 AAA_3 ATPase family 97.0 0.00054 1.4E-08 45.8 3.1 28 2-29 1-28 (131)
175 PRK08533 flagellar accessory p 97.0 0.0011 2.8E-08 43.8 4.7 126 3-129 27-174 (230)
176 PRK00440 rfc replication facto 97.0 0.00069 1.7E-08 45.1 3.5 24 2-25 39-62 (318)
177 PTZ00322 6-phosphofructo-2-kin 97.0 0.0095 2.4E-07 38.0 9.1 159 3-177 218-393 (664)
178 KOG2004 consensus 97.0 0.00047 1.2E-08 46.1 2.4 38 3-40 441-481 (906)
179 TIGR01241 FtsH_fam ATP-depende 96.9 0.00036 9.1E-09 46.9 1.6 29 3-31 95-123 (505)
180 pfam03029 ATP_bind_1 Conserved 96.9 0.00044 1.1E-08 46.3 2.0 21 5-25 1-21 (234)
181 COG1224 TIP49 DNA helicase TIP 96.9 0.00086 2.2E-08 44.5 3.4 37 3-39 68-108 (450)
182 PRK07270 DNA polymerase III su 96.9 0.002 5.1E-08 42.2 5.2 26 3-28 40-65 (557)
183 PRK06067 flagellar accessory p 96.9 0.0014 3.5E-08 43.3 4.3 56 3-58 35-95 (241)
184 pfam03266 DUF265 Protein of un 96.9 0.00083 2.1E-08 44.6 3.2 24 2-25 1-24 (168)
185 PRK05537 bifunctional sulfate 96.9 0.0023 5.8E-08 41.8 5.4 155 2-193 394-562 (568)
186 COG0529 CysC Adenylylsulfate k 96.9 0.0011 2.9E-08 43.8 3.8 149 3-193 26-191 (197)
187 PRK13764 ATPase; Provisional 96.9 0.00091 2.3E-08 44.3 3.3 23 3-25 262-284 (605)
188 PRK08853 DNA polymerase III su 96.9 0.0056 1.4E-07 39.4 7.3 118 3-125 41-171 (717)
189 PRK08451 DNA polymerase III su 96.9 0.0054 1.4E-07 39.5 7.2 24 3-26 39-62 (523)
190 COG1072 CoaA Panthothenate kin 96.9 0.0012 3E-08 43.7 3.7 123 3-130 85-234 (283)
191 PRK12337 2-phosphoglycerate ki 96.9 0.0016 4.2E-08 42.7 4.5 39 3-41 265-303 (492)
192 COG1222 RPT1 ATP-dependent 26S 96.8 0.002 5.2E-08 42.2 4.8 43 3-45 188-232 (406)
193 pfam05729 NACHT NACHT domain. 96.8 0.0012 3E-08 43.7 3.5 22 2-23 2-23 (165)
194 TIGR00174 miaA tRNA delta(2)-i 96.8 0.019 4.9E-07 36.1 9.6 177 3-196 2-213 (307)
195 TIGR03499 FlhF flagellar biosy 96.8 0.00076 1.9E-08 44.9 2.4 20 5-24 199-218 (282)
196 COG2812 DnaX DNA polymerase II 96.8 0.0048 1.2E-07 39.8 6.4 106 4-116 42-156 (515)
197 COG0464 SpoVK ATPases of the A 96.8 0.0018 4.5E-08 42.6 4.0 36 2-37 278-315 (494)
198 cd03115 SRP The signal recogni 96.8 0.0013 3.4E-08 43.3 3.4 22 3-24 3-24 (173)
199 PRK10416 cell division protein 96.8 0.0042 1.1E-07 40.2 5.9 47 3-49 298-349 (499)
200 pfam01745 IPT Isopentenyl tran 96.7 0.0034 8.6E-08 40.8 5.4 126 1-131 1-142 (232)
201 KOG0734 consensus 96.7 0.0062 1.6E-07 39.1 6.7 29 3-31 340-368 (752)
202 TIGR01193 bacteriocin_ABC ABC- 96.7 0.0011 2.8E-08 43.8 2.8 27 2-28 502-530 (710)
203 pfam06068 TIP49 TIP49 C-termin 96.7 0.0015 3.8E-08 43.0 3.4 39 3-41 53-95 (395)
204 PRK06645 DNA polymerase III su 96.7 0.00099 2.5E-08 44.1 2.5 25 3-27 46-70 (507)
205 TIGR00455 apsK adenylylsulfate 96.7 0.0012 3E-08 43.6 2.8 104 3-123 22-135 (187)
206 COG1484 DnaC DNA replication p 96.7 0.0081 2.1E-07 38.4 7.0 36 2-37 107-147 (254)
207 CHL00176 ftsH cell division pr 96.7 0.0013 3.3E-08 43.4 2.9 33 3-35 213-247 (631)
208 PRK07994 DNA polymerase III su 96.7 0.0033 8.4E-08 40.8 4.9 106 3-125 41-171 (643)
209 PRK08099 nicotinamide-nucleoti 96.7 0.0021 5.4E-08 42.0 3.8 36 2-39 233-268 (411)
210 KOG3308 consensus 96.7 0.053 1.3E-06 33.3 10.9 170 1-191 2-202 (225)
211 KOG0733 consensus 96.7 0.0016 4.2E-08 42.7 3.2 98 3-102 548-694 (802)
212 COG1223 Predicted ATPase (AAA+ 96.6 0.0034 8.8E-08 40.7 4.5 42 2-43 153-196 (368)
213 KOG0707 consensus 96.6 0.022 5.7E-07 35.6 8.7 67 115-197 158-225 (231)
214 PRK05201 hslU ATP-dependent pr 96.6 0.0027 6.9E-08 41.4 3.9 29 2-30 52-80 (442)
215 PRK05506 bifunctional sulfate 96.6 0.0039 9.9E-08 40.4 4.7 103 3-123 446-557 (613)
216 KOG0731 consensus 96.6 0.0019 4.9E-08 42.3 3.1 29 3-31 347-375 (774)
217 KOG1969 consensus 96.6 0.0022 5.7E-08 41.9 3.4 29 2-30 327-356 (877)
218 KOG1533 consensus 96.6 0.0012 3.1E-08 43.6 2.0 21 3-23 5-25 (290)
219 PRK10733 hflB ATP-dependent me 96.5 0.0019 4.9E-08 42.3 2.9 33 3-35 188-222 (644)
220 PRK05342 clpX ATP-dependent pr 96.5 0.0034 8.6E-08 40.8 4.1 28 2-29 111-138 (411)
221 PRK08691 DNA polymerase III su 96.5 0.0027 7E-08 41.4 3.6 116 3-125 41-171 (704)
222 cd00071 GMPK Guanosine monopho 96.5 0.0022 5.5E-08 42.0 3.1 23 3-25 2-24 (137)
223 PRK07952 DNA replication prote 96.5 0.0078 2E-07 38.5 5.8 35 3-37 99-138 (242)
224 cd02028 UMPK_like Uridine mono 96.5 0.0027 7E-08 41.4 3.3 34 3-36 2-40 (179)
225 KOG0735 consensus 96.4 0.0042 1.1E-07 40.2 4.2 36 3-38 704-741 (952)
226 TIGR00958 3a01208 antigen pept 96.4 0.0025 6.4E-08 41.6 3.0 23 3-25 562-584 (770)
227 PRK07003 DNA polymerase III su 96.4 0.028 7E-07 35.1 8.3 109 3-116 41-156 (816)
228 PRK08770 DNA polymerase III su 96.4 0.016 4.1E-07 36.5 7.1 107 3-125 41-171 (663)
229 pfam00448 SRP54 SRP54-type pro 96.4 0.0031 7.9E-08 41.0 3.4 93 3-101 4-110 (196)
230 PRK12323 DNA polymerase III su 96.4 0.014 3.5E-07 37.0 6.6 106 3-125 41-176 (721)
231 PRK00091 miaA tRNA delta(2)-is 96.4 0.0042 1.1E-07 40.2 3.9 31 3-33 7-37 (304)
232 COG1855 ATPase (PilT family) [ 96.4 0.0031 7.8E-08 41.0 3.2 23 3-25 266-288 (604)
233 pfam01078 Mg_chelatase Magnesi 96.4 0.0023 5.8E-08 41.8 2.5 32 2-35 24-55 (207)
234 TIGR02788 VirB11 P-type DNA tr 96.4 0.0028 7.1E-08 41.3 2.9 23 2-24 160-182 (328)
235 COG0714 MoxR-like ATPases [Gen 96.3 0.0046 1.2E-07 39.9 3.7 27 2-28 45-71 (329)
236 PHA02244 ATPase-like protein 96.3 0.0058 1.5E-07 39.3 4.2 37 2-38 121-157 (383)
237 TIGR01448 recD_rel helicase, R 96.3 0.0037 9.3E-08 40.6 3.2 25 2-26 366-391 (769)
238 TIGR01846 type_I_sec_HlyB type 96.3 0.003 7.6E-08 41.1 2.5 22 5-27 496-517 (703)
239 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0042 1.1E-07 40.2 3.3 23 2-24 79-102 (361)
240 TIGR02639 ClpA ATP-dependent C 96.2 0.0058 1.5E-07 39.3 3.9 33 4-36 531-565 (774)
241 KOG1970 consensus 96.2 0.0049 1.2E-07 39.8 3.5 28 2-29 111-139 (634)
242 pfam07724 AAA_2 AAA domain (Cd 96.2 0.0046 1.2E-07 40.0 3.3 34 2-35 5-43 (168)
243 KOG0737 consensus 96.2 0.0032 8.2E-08 40.9 2.5 35 2-36 129-165 (386)
244 PRK06731 flhF flagellar biosyn 96.2 0.0048 1.2E-07 39.8 3.4 39 3-41 78-120 (270)
245 PRK06995 flhF flagellar biosyn 96.2 0.0027 6.9E-08 41.4 2.1 104 3-115 179-294 (404)
246 KOG0743 consensus 96.2 0.0039 1E-07 40.4 2.8 25 4-28 239-263 (457)
247 cd02026 PRK Phosphoribulokinas 96.1 0.012 2.9E-07 37.4 5.1 143 3-161 2-166 (273)
248 cd01120 RecA-like_NTPases RecA 96.1 0.0055 1.4E-07 39.5 3.4 36 2-37 1-41 (165)
249 COG0606 Predicted ATPase with 96.1 0.003 7.8E-08 41.1 2.1 33 2-36 200-232 (490)
250 KOG0738 consensus 96.1 0.0055 1.4E-07 39.5 3.4 33 3-35 248-282 (491)
251 PRK06761 hypothetical protein; 96.1 0.0053 1.4E-07 39.5 3.1 24 3-26 5-28 (281)
252 PRK13407 bchI magnesium chelat 96.1 0.0058 1.5E-07 39.3 3.2 23 2-24 31-53 (334)
253 PRK09862 putative ATP-dependen 96.1 0.0043 1.1E-07 40.1 2.5 33 2-36 212-244 (506)
254 KOG0742 consensus 96.0 0.0056 1.4E-07 39.4 3.1 33 2-34 386-420 (630)
255 TIGR02237 recomb_radB DNA repa 96.0 0.0043 1.1E-07 40.1 2.5 126 5-170 17-150 (223)
256 TIGR01978 sufC FeS assembly AT 96.0 0.0047 1.2E-07 39.9 2.6 24 3-26 29-52 (248)
257 COG1219 ClpX ATP-dependent pro 96.0 0.0078 2E-07 38.5 3.8 27 2-28 99-125 (408)
258 KOG0780 consensus 96.0 0.011 2.9E-07 37.5 4.4 36 3-38 104-143 (483)
259 PRK10522 multidrug transporter 95.9 0.0055 1.4E-07 39.5 2.6 25 2-26 351-375 (547)
260 cd01130 VirB11-like_ATPase Typ 95.9 0.0072 1.8E-07 38.7 3.2 25 1-25 26-50 (186)
261 TIGR02928 TIGR02928 orc1/cdc6 95.9 0.0074 1.9E-07 38.7 3.3 22 2-23 45-66 (383)
262 TIGR02782 TrbB_P P-type conjug 95.9 0.0045 1.2E-07 40.0 2.2 23 1-23 140-162 (315)
263 KOG0739 consensus 95.9 0.012 3.1E-07 37.3 4.2 35 3-37 169-205 (439)
264 TIGR01186 proV glycine betaine 95.9 0.0063 1.6E-07 39.1 2.8 28 3-30 22-53 (372)
265 PRK09111 DNA polymerase III su 95.9 0.0075 1.9E-07 38.6 3.2 115 3-124 48-182 (600)
266 COG3911 Predicted ATPase [Gene 95.8 0.015 3.8E-07 36.7 4.5 40 1-41 9-51 (183)
267 PRK08116 hypothetical protein; 95.8 0.03 7.5E-07 34.9 6.0 36 3-38 111-151 (262)
268 TIGR00390 hslU heat shock prot 95.8 0.0094 2.4E-07 38.0 3.3 30 2-31 49-78 (463)
269 pfam00910 RNA_helicase RNA hel 95.8 0.0077 2E-07 38.5 2.8 22 3-24 1-22 (105)
270 TIGR02982 heterocyst_DevA ABC 95.7 0.0073 1.9E-07 38.7 2.6 20 3-22 33-53 (220)
271 TIGR00235 udk uridine kinase; 95.7 0.046 1.2E-06 33.7 6.6 140 4-165 14-186 (220)
272 PRK07940 DNA polymerase III su 95.7 0.022 5.6E-07 35.7 5.0 106 3-115 42-156 (395)
273 TIGR02868 CydC ABC transporter 95.7 0.0087 2.2E-07 38.2 2.9 22 2-23 389-410 (566)
274 COG0324 MiaA tRNA delta(2)-iso 95.7 0.015 3.8E-07 36.7 4.0 32 3-34 6-37 (308)
275 PRK10789 putative multidrug tr 95.7 0.012 3.1E-07 37.3 3.5 25 2-26 343-367 (569)
276 PRK06872 DNA polymerase III su 95.6 0.023 5.9E-07 35.5 4.9 108 3-116 41-156 (696)
277 PRK04841 transcriptional regul 95.6 0.089 2.3E-06 31.9 7.9 29 3-31 35-64 (903)
278 PRK13657 cyclic beta-1,2-gluca 95.6 0.011 2.8E-07 37.6 3.2 25 2-26 363-387 (585)
279 TIGR03015 pepcterm_ATPase puta 95.6 0.011 2.9E-07 37.4 3.3 37 3-39 46-92 (269)
280 PRK05648 DNA polymerase III su 95.6 0.0093 2.4E-07 38.0 2.8 106 3-125 41-171 (705)
281 cd01882 BMS1 Bms1. Bms1 is an 95.6 0.011 2.8E-07 37.6 3.1 26 3-28 42-67 (225)
282 KOG0741 consensus 95.6 0.014 3.7E-07 36.8 3.7 24 3-26 259-282 (744)
283 PRK12727 flagellar biosynthesi 95.6 0.017 4.3E-07 36.4 4.0 25 3-27 351-375 (557)
284 PRK00771 signal recognition pa 95.6 0.028 7E-07 35.1 5.2 37 3-39 100-140 (433)
285 KOG0234 consensus 95.6 0.036 9.2E-07 34.3 5.7 172 3-178 31-213 (438)
286 KOG0635 consensus 95.6 0.0052 1.3E-07 39.6 1.4 110 1-123 32-145 (207)
287 KOG1534 consensus 95.5 0.0095 2.4E-07 37.9 2.6 44 152-195 207-250 (273)
288 PRK06851 hypothetical protein; 95.5 0.015 3.8E-07 36.7 3.6 24 1-24 31-55 (368)
289 PRK11160 cysteine/glutathione 95.5 0.011 2.9E-07 37.5 3.0 25 2-26 369-393 (575)
290 COG0378 HypB Ni2+-binding GTPa 95.5 0.011 2.9E-07 37.5 2.9 34 2-36 15-52 (202)
291 PRK00411 cdc6 cell division co 95.5 0.014 3.5E-07 37.0 3.3 30 2-31 57-93 (394)
292 PRK10790 putative multidrug tr 95.5 0.014 3.7E-07 36.8 3.4 26 2-27 369-394 (593)
293 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.012 3.1E-07 37.3 3.0 24 2-25 31-54 (238)
294 PRK11176 lipid transporter ATP 95.5 0.011 2.8E-07 37.5 2.8 26 2-27 370-395 (581)
295 PRK09361 radB DNA repair and r 95.4 0.016 4E-07 36.6 3.3 29 3-31 26-59 (224)
296 PRK11331 5-methylcytosine-spec 95.4 0.016 4E-07 36.6 3.3 25 2-26 196-220 (459)
297 COG0467 RAD55 RecA-superfamily 95.4 0.017 4.3E-07 36.4 3.4 54 3-60 26-88 (260)
298 cd04150 Arf1_5_like Arf1-Arf5- 95.4 0.016 4.2E-07 36.5 3.4 22 1-22 1-22 (159)
299 TIGR02673 FtsE cell division A 95.4 0.013 3.4E-07 37.1 2.8 28 3-30 31-62 (215)
300 COG1100 GTPase SAR1 and relate 95.4 0.013 3.2E-07 37.2 2.7 25 1-25 6-30 (219)
301 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.033 8.5E-07 34.5 4.9 33 3-35 41-78 (226)
302 TIGR02528 EutP ethanolamine ut 95.3 0.0091 2.3E-07 38.1 1.9 21 2-22 2-22 (144)
303 pfam08298 AAA_PrkA PrkA AAA do 95.3 0.017 4.3E-07 36.4 3.2 23 2-24 86-109 (358)
304 KOG0651 consensus 95.3 0.037 9.5E-07 34.2 5.0 34 4-37 170-205 (388)
305 PRK12726 flagellar biosynthesi 95.3 0.035 8.9E-07 34.4 4.8 86 3-91 209-299 (407)
306 cd03248 ABCC_TAP TAP, the Tran 95.3 0.014 3.6E-07 36.9 2.7 24 2-25 42-65 (226)
307 KOG0745 consensus 95.3 0.023 5.9E-07 35.5 3.8 28 2-29 228-255 (564)
308 pfam00437 GSPII_E Type II/IV s 95.3 0.021 5.3E-07 35.8 3.5 24 2-25 141-164 (283)
309 cd03253 ABCC_ATM1_transporter 95.2 0.014 3.5E-07 37.0 2.6 23 2-24 29-51 (236)
310 PRK06620 hypothetical protein; 95.2 0.025 6.3E-07 35.3 3.9 29 3-31 47-75 (214)
311 KOG2028 consensus 95.2 0.016 4.1E-07 36.5 2.9 29 3-31 165-198 (554)
312 COG0552 FtsY Signal recognitio 95.2 0.05 1.3E-06 33.5 5.4 47 3-49 142-193 (340)
313 PRK06921 hypothetical protein; 95.2 0.062 1.6E-06 32.9 5.9 35 3-37 119-159 (265)
314 pfam02283 CobU Cobinamide kina 95.2 0.021 5.3E-07 35.8 3.5 31 3-33 1-33 (166)
315 TIGR00959 ffh signal recogniti 95.2 0.037 9.5E-07 34.2 4.7 80 3-84 105-197 (439)
316 PRK09087 hypothetical protein; 95.2 0.03 7.6E-07 34.8 4.2 32 3-34 47-78 (226)
317 cd03254 ABCC_Glucan_exporter_l 95.2 0.018 4.7E-07 36.2 3.1 24 2-25 31-54 (229)
318 PRK11174 cysteine/glutathione 95.2 0.02 5.2E-07 35.9 3.3 23 2-24 378-400 (588)
319 COG1122 CbiO ABC-type cobalt t 95.2 0.017 4.2E-07 36.4 2.9 21 2-22 32-52 (235)
320 TIGR00956 3a01205 Pleiotropic 95.2 0.03 7.7E-07 34.8 4.2 118 4-123 857-1001(1466)
321 TIGR03346 chaperone_ClpB ATP-d 95.2 0.023 6E-07 35.5 3.6 34 2-35 196-241 (852)
322 cd03291 ABCC_CFTR1 The CFTR su 95.2 0.015 3.8E-07 36.7 2.6 23 2-24 65-87 (282)
323 PRK13648 cbiO cobalt transport 95.2 0.02 5.1E-07 35.9 3.2 22 3-24 38-59 (269)
324 TIGR01842 type_I_sec_PrtD type 95.1 0.015 3.8E-07 36.8 2.5 33 3-35 359-395 (556)
325 pfam01712 dNK Deoxynucleoside 95.1 0.045 1.2E-06 33.7 5.0 81 100-192 61-143 (146)
326 COG3842 PotA ABC-type spermidi 95.1 0.019 4.8E-07 36.1 3.0 19 3-21 34-52 (352)
327 TIGR00968 3a0106s01 sulfate AB 95.1 0.017 4.3E-07 36.4 2.7 19 3-21 29-47 (241)
328 PRK13635 cbiO cobalt transport 95.1 0.019 4.9E-07 36.0 3.0 22 3-24 36-57 (279)
329 COG3839 MalK ABC-type sugar tr 95.1 0.019 4.9E-07 36.0 3.0 19 3-21 32-50 (338)
330 cd04155 Arl3 Arl3 subfamily. 95.1 0.022 5.5E-07 35.7 3.2 23 1-23 15-37 (173)
331 KOG0058 consensus 95.1 0.023 5.9E-07 35.5 3.3 24 3-26 497-520 (716)
332 PRK10865 protein disaggregatio 95.1 0.025 6.3E-07 35.4 3.5 34 2-35 201-246 (857)
333 TIGR01447 recD exodeoxyribonuc 95.0 0.017 4.3E-07 36.4 2.6 18 3-20 245-262 (753)
334 PRK13640 cbiO cobalt transport 95.0 0.02 5E-07 36.0 2.9 23 2-24 36-58 (283)
335 TIGR02203 MsbA_lipidA lipid A 95.0 0.014 3.5E-07 37.0 2.1 30 3-35 391-420 (603)
336 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.11 2.7E-06 31.4 6.6 19 5-23 24-42 (235)
337 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.026 6.7E-07 35.2 3.5 25 2-26 36-60 (207)
338 cd03296 ABC_CysA_sulfate_impor 95.0 0.018 4.7E-07 36.2 2.7 22 3-24 31-52 (239)
339 cd04154 Arl2 Arl2 subfamily. 95.0 0.021 5.4E-07 35.8 3.0 21 1-21 15-35 (173)
340 cd03246 ABCC_Protease_Secretio 95.0 0.022 5.6E-07 35.7 3.1 24 2-25 30-53 (173)
341 PRK10867 signal recognition pa 95.0 0.045 1.2E-06 33.7 4.7 37 3-39 103-144 (453)
342 cd03257 ABC_NikE_OppD_transpor 95.0 0.019 4.9E-07 36.1 2.8 22 3-24 34-55 (228)
343 TIGR02902 spore_lonB ATP-depen 95.0 0.024 6.2E-07 35.4 3.3 19 2-20 88-106 (532)
344 cd01394 radB RadB. The archaea 95.0 0.025 6.4E-07 35.3 3.3 30 3-32 22-56 (218)
345 TIGR00073 hypB hydrogenase acc 95.0 0.016 4.1E-07 36.5 2.3 64 5-76 39-114 (225)
346 TIGR02204 MsbA_rel ABC transpo 95.0 0.023 5.8E-07 35.6 3.1 25 2-26 368-392 (576)
347 COG1132 MdlB ABC-type multidru 95.0 0.025 6.4E-07 35.3 3.3 70 2-71 357-442 (567)
348 KOG0735 consensus 95.0 0.025 6.4E-07 35.3 3.3 26 2-27 433-458 (952)
349 PRK13531 regulatory ATPase Rav 95.0 0.022 5.6E-07 35.7 3.0 23 2-24 41-63 (498)
350 cd03299 ABC_ModC_like Archeal 95.0 0.02 5E-07 36.0 2.7 21 3-23 28-48 (235)
351 cd03234 ABCG_White The White s 95.0 0.021 5.4E-07 35.8 2.9 22 3-24 36-57 (226)
352 KOG0055 consensus 94.9 0.061 1.6E-06 32.9 5.2 24 3-26 382-405 (1228)
353 TIGR00064 ftsY signal recognit 94.9 0.038 9.6E-07 34.2 4.1 80 3-84 85-172 (284)
354 COG1474 CDC6 Cdc6-related prot 94.9 0.025 6.4E-07 35.3 3.2 23 2-24 44-66 (366)
355 TIGR02525 plasmid_TraJ plasmid 94.9 0.02 5.1E-07 35.9 2.7 47 4-52 153-215 (374)
356 cd03292 ABC_FtsE_transporter F 94.9 0.021 5.4E-07 35.8 2.8 20 3-22 30-49 (214)
357 COG0465 HflB ATP-dependent Zn 94.9 0.019 4.9E-07 36.1 2.6 34 3-36 186-221 (596)
358 cd03294 ABC_Pro_Gly_Bertaine T 94.9 0.02 5.1E-07 35.9 2.6 21 3-23 53-73 (269)
359 cd03262 ABC_HisP_GlnQ_permease 94.9 0.022 5.7E-07 35.6 2.8 20 3-22 29-48 (213)
360 PRK06835 DNA replication prote 94.9 0.088 2.2E-06 31.9 5.8 36 2-37 185-225 (330)
361 cd03251 ABCC_MsbA MsbA is an e 94.8 0.021 5.4E-07 35.8 2.7 24 2-25 30-53 (234)
362 cd03260 ABC_PstB_phosphate_tra 94.8 0.025 6.4E-07 35.3 2.9 23 3-25 29-51 (227)
363 TIGR03415 ABC_choXWV_ATP choli 94.8 0.023 5.9E-07 35.5 2.8 20 3-22 53-72 (382)
364 COG2274 SunT ABC-type bacterio 94.8 0.023 5.8E-07 35.6 2.7 65 2-67 501-582 (709)
365 TIGR01187 potA polyamine ABC t 94.8 0.013 3.4E-07 37.1 1.5 28 5-35 1-28 (331)
366 cd03252 ABCC_Hemolysin The ABC 94.8 0.021 5.4E-07 35.8 2.6 24 2-25 30-53 (237)
367 cd03288 ABCC_SUR2 The SUR doma 94.8 0.027 7E-07 35.1 3.1 25 2-26 49-73 (257)
368 PRK13633 cobalt transporter AT 94.7 0.028 7.1E-07 35.0 3.0 21 3-23 40-60 (281)
369 cd03298 ABC_ThiQ_thiamine_tran 94.7 0.025 6.3E-07 35.3 2.8 21 3-23 27-47 (211)
370 TIGR01420 pilT_fam twitching m 94.7 0.03 7.6E-07 34.8 3.2 23 3-25 130-152 (350)
371 PRK11664 ATP-dependent RNA hel 94.7 0.02 5.2E-07 35.9 2.3 22 3-24 23-45 (812)
372 PRK05800 cobU adenosylcobinami 94.7 0.032 8.1E-07 34.7 3.3 34 1-34 2-37 (170)
373 PRK10070 glycine betaine trans 94.7 0.025 6.3E-07 35.4 2.7 21 3-23 57-77 (400)
374 cd03261 ABC_Org_Solvent_Resist 94.7 0.027 6.8E-07 35.2 2.9 21 3-23 29-49 (235)
375 COG0470 HolB ATPase involved i 94.7 0.03 7.7E-07 34.8 3.2 23 3-25 27-49 (325)
376 TIGR03375 type_I_sec_LssB type 94.7 0.02 5.1E-07 35.9 2.2 25 2-26 493-517 (694)
377 cd03295 ABC_OpuCA_Osmoprotecti 94.7 0.025 6.4E-07 35.3 2.7 22 3-24 30-51 (242)
378 cd03245 ABCC_bacteriocin_expor 94.7 0.024 6.2E-07 35.4 2.6 23 2-24 32-54 (220)
379 PRK13632 cbiO cobalt transport 94.7 0.028 7.2E-07 35.0 3.0 23 2-24 38-60 (273)
380 cd03213 ABCG_EPDR ABCG transpo 94.7 0.026 6.7E-07 35.2 2.8 20 3-22 38-57 (194)
381 PRK13650 cbiO cobalt transport 94.7 0.028 7.1E-07 35.0 2.9 23 2-24 32-54 (276)
382 cd03301 ABC_MalK_N The N-termi 94.7 0.028 7E-07 35.1 2.9 22 3-24 29-50 (213)
383 KOG0741 consensus 94.7 0.03 7.7E-07 34.8 3.1 33 3-35 541-576 (744)
384 KOG0729 consensus 94.7 0.074 1.9E-06 32.4 5.1 40 3-42 214-255 (435)
385 PRK13637 cbiO cobalt transport 94.7 0.025 6.4E-07 35.3 2.6 21 3-23 36-56 (287)
386 PRK13634 cbiO cobalt transport 94.7 0.023 5.9E-07 35.5 2.5 21 3-23 23-43 (276)
387 cd03244 ABCC_MRP_domain2 Domai 94.6 0.033 8.4E-07 34.6 3.2 24 2-25 32-55 (221)
388 cd03232 ABC_PDR_domain2 The pl 94.6 0.029 7.5E-07 34.9 2.9 20 3-22 36-55 (192)
389 COG5635 Predicted NTPase (NACH 94.6 0.028 7.1E-07 35.0 2.8 25 2-26 224-248 (824)
390 PRK10247 putative ABC transpor 94.6 0.034 8.6E-07 34.5 3.2 22 3-24 36-57 (225)
391 COG1220 HslU ATP-dependent pro 94.6 0.046 1.2E-06 33.7 3.9 28 2-29 52-79 (444)
392 PRK06647 DNA polymerase III su 94.6 0.031 8E-07 34.7 3.0 24 3-26 41-64 (560)
393 PRK13851 type IV secretion sys 94.6 0.031 7.8E-07 34.8 3.0 25 1-25 163-187 (343)
394 pfam00025 Arf ADP-ribosylation 94.6 0.032 8.2E-07 34.6 3.1 23 1-23 15-37 (174)
395 cd03297 ABC_ModC_molybdenum_tr 94.6 0.028 7.1E-07 35.0 2.7 29 3-34 26-54 (214)
396 cd03278 ABC_SMC_barmotin Barmo 94.6 0.038 9.7E-07 34.2 3.4 23 3-25 25-47 (197)
397 PRK13642 cbiO cobalt transport 94.5 0.03 7.6E-07 34.8 2.8 23 2-24 35-57 (277)
398 TIGR00960 3a0501s02 Type II (G 94.5 0.031 7.9E-07 34.7 2.9 21 3-23 32-52 (216)
399 pfam00308 Bac_DnaA Bacterial d 94.5 0.08 2E-06 32.2 5.0 38 3-40 37-81 (219)
400 PRK11889 flhF flagellar biosyn 94.5 0.039 9.8E-07 34.2 3.4 92 3-103 244-349 (436)
401 cd03289 ABCC_CFTR2 The CFTR su 94.5 0.039 9.9E-07 34.1 3.4 24 2-25 32-55 (275)
402 cd03256 ABC_PhnC_transporter A 94.5 0.03 7.6E-07 34.8 2.8 22 3-24 30-51 (241)
403 cd03116 MobB Molybdenum is an 94.5 0.041 1E-06 34.0 3.5 24 1-24 1-25 (159)
404 CHL00095 clpC Clp protease ATP 94.5 0.036 9.3E-07 34.3 3.2 30 5-34 544-578 (823)
405 cd03229 ABC_Class3 This class 94.5 0.032 8E-07 34.7 2.9 28 3-33 29-56 (178)
406 cd03300 ABC_PotA_N PotA is an 94.5 0.031 8E-07 34.7 2.9 20 3-22 29-48 (232)
407 TIGR03608 L_ocin_972_ABC putat 94.5 0.032 8.2E-07 34.6 2.9 29 3-34 27-55 (206)
408 TIGR02533 type_II_gspE general 94.5 0.018 4.5E-07 36.3 1.6 15 3-17 248-262 (495)
409 PRK11432 fbpC ferric transport 94.5 0.027 6.8E-07 35.1 2.4 29 3-34 35-63 (351)
410 COG1136 SalX ABC-type antimicr 94.5 0.035 8.9E-07 34.4 3.0 19 3-21 34-52 (226)
411 cd03247 ABCC_cytochrome_bd The 94.5 0.036 9.2E-07 34.3 3.1 24 2-25 30-53 (178)
412 KOG0989 consensus 94.5 0.044 1.1E-06 33.8 3.5 29 2-30 59-87 (346)
413 KOG0727 consensus 94.4 0.036 9.3E-07 34.3 3.1 27 3-29 192-218 (408)
414 pfam01443 Viral_helicase1 Vira 94.4 0.037 9.5E-07 34.2 3.1 32 3-34 1-32 (226)
415 cd03223 ABCD_peroxisomal_ALDP 94.4 0.032 8.3E-07 34.6 2.8 22 2-23 29-50 (166)
416 PRK13646 cbiO cobalt transport 94.4 0.037 9.5E-07 34.2 3.1 22 3-24 36-57 (286)
417 PRK10851 sulfate/thiosulfate t 94.4 0.031 8E-07 34.7 2.7 21 3-23 31-51 (352)
418 cd00544 CobU Adenosylcobinamid 94.4 0.07 1.8E-06 32.5 4.5 32 3-34 2-35 (169)
419 PRK11650 ugpC glycerol-3-phosp 94.4 0.031 8E-07 34.7 2.7 21 3-23 33-53 (358)
420 PRK11264 putative amino-acid A 94.4 0.035 8.9E-07 34.4 2.9 19 3-21 30-48 (248)
421 KOG0991 consensus 94.4 0.036 9.2E-07 34.3 2.9 23 2-24 50-72 (333)
422 cd04149 Arf6 Arf6 subfamily. 94.4 0.035 9E-07 34.4 2.9 22 1-22 10-31 (168)
423 TIGR03265 PhnT2 putative 2-ami 94.4 0.033 8.4E-07 34.6 2.7 20 3-22 33-52 (353)
424 TIGR00972 3a0107s01c2 phosphat 94.4 0.027 7E-07 35.1 2.3 21 4-24 31-51 (248)
425 PRK11629 lolD lipoprotein tran 94.4 0.036 9.1E-07 34.4 2.9 20 3-22 38-57 (233)
426 PTZ00265 multidrug resistance 94.4 0.035 9E-07 34.4 2.9 25 2-26 413-437 (1467)
427 TIGR03258 PhnT 2-aminoethylpho 94.4 0.034 8.6E-07 34.5 2.7 20 3-22 34-53 (362)
428 PRK13644 cbiO cobalt transport 94.3 0.04 1E-06 34.0 3.1 22 3-24 31-52 (274)
429 CHL00131 ycf16 sulfate ABC tra 94.3 0.035 8.8E-07 34.4 2.7 20 3-22 35-54 (252)
430 smart00177 ARF ARF-like small 94.3 0.038 9.7E-07 34.2 2.9 22 1-22 14-35 (175)
431 cd00878 Arf_Arl Arf (ADP-ribos 94.3 0.038 9.6E-07 34.2 2.9 22 2-23 1-22 (158)
432 cd03228 ABCC_MRP_Like The MRP 94.3 0.041 1.1E-06 34.0 3.1 24 2-25 30-53 (171)
433 cd03293 ABC_NrtD_SsuB_transpor 94.3 0.035 8.9E-07 34.4 2.7 22 3-24 33-54 (220)
434 COG2087 CobU Adenosyl cobinami 94.3 0.044 1.1E-06 33.8 3.2 48 1-54 1-50 (175)
435 cd03290 ABCC_SUR1_N The SUR do 94.3 0.036 9.3E-07 34.3 2.8 24 2-25 29-52 (218)
436 COG1126 GlnQ ABC-type polar am 94.3 0.038 9.8E-07 34.2 2.9 19 3-21 31-49 (240)
437 pfam03308 ArgK ArgK protein. T 94.3 0.049 1.3E-06 33.5 3.4 23 2-24 31-53 (267)
438 PRK11000 maltose/maltodextrin 94.3 0.036 9.1E-07 34.4 2.7 21 3-23 32-52 (369)
439 TIGR02880 cbbX_cfxQ CbbX prote 94.3 0.2 5.2E-06 29.6 6.5 110 1-118 59-195 (284)
440 pfam03205 MobB Molybdopterin g 94.2 0.054 1.4E-06 33.2 3.5 23 2-24 2-24 (122)
441 cd03114 ArgK-like The function 94.2 0.041 1.1E-06 34.0 2.9 22 3-24 2-23 (148)
442 PRK13643 cbiO cobalt transport 94.2 0.041 1E-06 34.0 2.9 22 3-24 35-56 (288)
443 PRK11248 tauB taurine transpor 94.2 0.038 9.6E-07 34.2 2.7 22 3-24 30-51 (255)
444 TIGR01243 CDC48 AAA family ATP 94.2 0.047 1.2E-06 33.6 3.2 26 3-28 243-268 (980)
445 TIGR00956 3a01205 Pleiotropic 94.2 0.031 7.9E-07 34.7 2.3 21 3-23 91-111 (1466)
446 PRK09452 potA putrescine/sperm 94.2 0.039 9.8E-07 34.1 2.8 21 3-23 46-66 (378)
447 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.2 0.039 9.9E-07 34.1 2.8 22 3-24 33-54 (218)
448 cd03226 ABC_cobalt_CbiO_domain 94.2 0.043 1.1E-06 33.8 3.0 22 3-24 29-50 (205)
449 COG3640 CooC CO dehydrogenase 94.2 0.056 1.4E-06 33.1 3.5 23 1-23 1-23 (255)
450 cd03222 ABC_RNaseL_inhibitor T 94.2 0.044 1.1E-06 33.8 3.0 20 3-22 28-47 (177)
451 pfam03796 DnaB_C DnaB-like hel 94.1 0.25 6.3E-06 29.1 6.8 29 3-31 22-56 (186)
452 PRK13647 cbiO cobalt transport 94.1 0.045 1.2E-06 33.7 3.0 22 3-24 34-55 (273)
453 cd03233 ABC_PDR_domain1 The pl 94.1 0.044 1.1E-06 33.8 2.9 22 3-24 36-57 (202)
454 PRK11147 ABC transporter ATPas 94.1 0.043 1.1E-06 33.9 2.8 22 2-23 31-52 (632)
455 TIGR03345 VI_ClpV1 type VI sec 94.1 0.058 1.5E-06 33.0 3.5 34 2-35 210-255 (852)
456 PRK10744 phosphate transporter 94.1 0.053 1.3E-06 33.3 3.3 24 3-26 39-62 (257)
457 PRK13651 cobalt transporter AT 94.1 0.045 1.2E-06 33.7 2.9 20 3-22 36-55 (304)
458 cd03250 ABCC_MRP_domain1 Domai 94.1 0.045 1.2E-06 33.7 2.9 30 2-34 33-62 (204)
459 COG1643 HrpA HrpA-like helicas 94.1 0.052 1.3E-06 33.3 3.2 24 3-26 68-91 (845)
460 PRK10636 putative ABC transpor 94.1 0.041 1E-06 34.0 2.6 20 2-21 340-359 (638)
461 PRK13540 cytochrome c biogenes 94.0 0.048 1.2E-06 33.5 3.0 22 3-24 30-51 (200)
462 KOG0728 consensus 94.0 0.12 3.1E-06 31.1 5.0 43 3-45 184-228 (404)
463 COG0468 RecA RecA/RadA recombi 94.0 0.046 1.2E-06 33.7 2.9 22 2-23 61-83 (279)
464 PRK10584 putative ABC transpor 94.0 0.041 1E-06 34.0 2.6 22 3-24 39-60 (228)
465 cd03258 ABC_MetN_methionine_tr 94.0 0.039 9.9E-07 34.1 2.5 20 3-22 34-53 (233)
466 PRK13645 cbiO cobalt transport 94.0 0.047 1.2E-06 33.6 2.9 21 3-23 40-60 (289)
467 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.0 0.048 1.2E-06 33.5 2.9 23 1-23 16-38 (174)
468 cd04123 Rab21 Rab21 subfamily. 94.0 0.059 1.5E-06 33.0 3.4 23 1-23 1-23 (162)
469 PRK13900 type IV secretion sys 94.0 0.052 1.3E-06 33.3 3.1 24 1-24 161-184 (332)
470 PRK10636 putative ABC transpor 94.0 0.042 1.1E-06 33.9 2.6 23 2-24 29-51 (638)
471 COG4987 CydC ABC-type transpor 94.0 0.055 1.4E-06 33.2 3.2 68 2-70 366-450 (573)
472 cd00154 Rab Rab family. Rab G 94.0 0.058 1.5E-06 33.0 3.3 23 1-23 1-23 (159)
473 KOG0730 consensus 94.0 0.079 2E-06 32.2 4.0 37 2-38 220-258 (693)
474 cd03235 ABC_Metallic_Cations A 93.9 0.052 1.3E-06 33.4 3.0 22 3-24 28-49 (213)
475 cd04152 Arl4_Arl7 Arl4/Arl7 su 93.9 0.05 1.3E-06 33.4 2.9 21 1-21 4-24 (183)
476 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.054 1.4E-06 33.2 3.1 22 3-24 29-50 (144)
477 cd04157 Arl6 Arl6 subfamily. 93.9 0.05 1.3E-06 33.4 2.9 21 2-22 1-21 (162)
478 PRK13652 cbiO cobalt transport 93.9 0.045 1.1E-06 33.7 2.7 22 3-24 33-54 (277)
479 PRK09435 arginine/ornithine tr 93.9 0.06 1.5E-06 32.9 3.3 23 2-24 51-73 (325)
480 PRK10771 thiQ thiamine transpo 93.9 0.05 1.3E-06 33.4 2.9 22 3-24 28-49 (233)
481 COG1116 TauB ABC-type nitrate/ 93.9 0.052 1.3E-06 33.3 3.0 19 3-21 32-50 (248)
482 PRK11124 artP arginine transpo 93.9 0.051 1.3E-06 33.4 2.9 19 3-21 31-49 (242)
483 pfam00503 G-alpha G-protein al 93.9 0.07 1.8E-06 32.5 3.6 24 1-24 29-52 (350)
484 PRK13631 cbiO cobalt transport 93.9 0.052 1.3E-06 33.3 2.9 22 3-24 55-76 (320)
485 cd03237 ABC_RNaseL_inhibitor_d 93.9 0.048 1.2E-06 33.6 2.7 21 3-23 28-48 (246)
486 PRK09580 sufC cysteine desulfu 93.9 0.052 1.3E-06 33.3 3.0 21 3-23 30-50 (248)
487 PRK13639 cbiO cobalt transport 93.9 0.049 1.3E-06 33.5 2.8 21 3-23 31-51 (275)
488 COG1124 DppF ABC-type dipeptid 93.9 0.042 1.1E-06 33.9 2.4 18 4-21 37-54 (252)
489 PRK13641 cbiO cobalt transport 93.9 0.042 1.1E-06 33.9 2.4 22 3-24 36-57 (286)
490 COG3854 SpoIIIAA ncharacterize 93.9 0.057 1.4E-06 33.1 3.1 23 1-23 138-160 (308)
491 PRK11819 putative ABC transpor 93.9 0.055 1.4E-06 33.2 3.0 21 2-22 35-55 (556)
492 PRK10419 nikE nickel transport 93.9 0.048 1.2E-06 33.5 2.7 20 3-22 41-60 (266)
493 PRK09493 glnQ glutamine ABC tr 93.8 0.053 1.3E-06 33.3 2.9 29 3-34 30-58 (240)
494 TIGR01425 SRP54_euk signal rec 93.8 0.077 2E-06 32.3 3.7 35 3-37 123-162 (453)
495 cd04156 ARLTS1 ARLTS1 subfamil 93.8 0.055 1.4E-06 33.2 2.9 20 2-21 1-20 (160)
496 KOG1942 consensus 93.8 0.15 3.8E-06 30.4 5.1 39 3-41 67-109 (456)
497 PRK13649 cbiO cobalt transport 93.8 0.056 1.4E-06 33.1 2.9 21 3-23 36-56 (280)
498 cd01863 Rab18 Rab18 subfamily. 93.8 0.068 1.7E-06 32.6 3.3 23 1-23 1-23 (161)
499 COG5192 BMS1 GTP-binding prote 93.8 0.062 1.6E-06 32.8 3.2 22 4-25 73-94 (1077)
500 PRK13543 cytochrome c biogenes 93.8 0.064 1.6E-06 32.7 3.2 22 3-24 40-61 (214)
No 1
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=100.00 E-value=0 Score=435.55 Aligned_cols=191 Identities=49% Similarity=0.778 Sum_probs=180.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHCC-CCC-
Q ss_conf 69998788999678999999971894895789999999600145666677--64134455410356655542023-222-
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKG--SMESGSLISDAIVNQVVCDRIRL-PDC- 77 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~--~l~~G~lvpd~ii~~li~~~l~~-~~~- 77 (201)
|++|||||||||||||++|+++||++|||+|||||++++++|++|++|++ ||++|+||||++|++||.++|.+ .++
T Consensus 1 ~~~~lGpPGsGKGTQa~~i~~~~gl~HISTGDllR~~~~~~T~LG~~~k~y~y~~~G~LVPD~~v~~lv~~rl~~~~~~~ 80 (232)
T TIGR01351 1 RLILLGPPGSGKGTQAKRIAEKLGLPHISTGDLLRAAVKAGTPLGKKAKEYNYMDKGELVPDEIVNQLVKERLQQNPDCV 80 (232)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 94675598987667999999860885020258999998707977898732672003775778999999999974560001
Q ss_pred ----CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHCCCCCCC------------------
Q ss_conf ----5317863801112457888766653125222103555422-12566423311232333------------------
Q gi|254780240|r 78 ----DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVED-ASMFKRIQVRVLEAIAS------------------ 134 (201)
Q Consensus 78 ----~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~-~~~~~R~~~R~~~~~~~------------------ 134 (201)
.+||||||||||+.||++|++++...+.++|.||.|++|+ +++++|+++|+.++.+|
T Consensus 81 ~~~~~~GfILDGfPRT~~QAeaL~~~l~~~g~~~d~V~~L~vp~~e~l~~R~~gR~~cp~cG~~Yh~~f~pPk~~gG~~~ 160 (232)
T TIGR01351 81 SLKSENGFILDGFPRTLSQAEALDAMLKELGLPIDAVIELDVPDLEELVERITGRRICPSCGRVYHIKFNPPKVPGGENL 160 (232)
T ss_pred EEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 10106862663888878999999999986189841788853587999999773273306778556102278867876798
Q ss_pred ------CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-------ECCCCCHHHHHHHHHHHHH
Q ss_conf ------455-656789899999999999975699999996797999-------9389988999999999999
Q gi|254780240|r 135 ------EKS-VRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYI-------IDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 135 ------~~~-~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~-------Idg~~~~~eV~~~I~~~l~ 192 (201)
+.. +|+||++|++++||+.|+++|+||++||++++.++. |||.+++++||+.|.++|.
T Consensus 161 cD~~~~~~l~qR~DD~~evv~~RL~~Y~~~t~Pli~yY~~~g~l~~f~~~y~~id~~~~~~~v~~~~~~~l~ 232 (232)
T TIGR01351 161 CDDCGGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYRKKGILVTFEGIYQTIDGNGPIDEVWKRILEALK 232 (232)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHHHHC
T ss_conf 864457502770699889999999998885200899998469136568632200378888889999999729
No 2
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=0 Score=409.18 Aligned_cols=196 Identities=47% Similarity=0.779 Sum_probs=188.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|||+|+|||||||||||.+|+++||++|||+||+||+++.++|++|.+++++|++|+||||++++.||.++|.+.+|.+|
T Consensus 1 MrIIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI~~~T~LG~kaK~im~~G~LVPDeIVi~lI~erL~~~d~~~G 80 (297)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (297)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 95999789999858999999998698867586999999975998799999999766988889999999999668566789
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78638011124578887666531252221035554221256642331123233345565678989999999999997569
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILP 160 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~p 160 (201)
|||||||||+.||+.|+.+|...+..+|+||.|+|+++.+++|+.+|.++....-...|+|||+|++++||..|+++|.|
T Consensus 81 fILDGFPRTv~QAEaLD~~L~~~g~~LD~VIel~Vdd~~Lv~RI~~R~~e~~a~Ge~~R~DDn~E~~~kRL~~Y~~qT~P 160 (297)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP 160 (297)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87228999989999999999818999786899767889999999988887761488788899999999999999982012
Q ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999679799993899889999999999999998
Q gi|254780240|r 161 LSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 161 v~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k 196 (201)
++.||.+++.|.+|||.+++|+|+++|..+|..+.+
T Consensus 161 l~~yY~e~~~L~~VDGm~~IDeVt~~I~r~l~a~~~ 196 (297)
T PRK13808 161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (297)
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 599987169578622866099999999999999840
No 3
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=0 Score=397.12 Aligned_cols=194 Identities=43% Similarity=0.707 Sum_probs=186.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|||+|+|||||||||||++||++||++|||+||+||++++++|++|+++++++++|++|||+++++++.++|.+.+|.+|
T Consensus 1 m~iillG~PGsGKgTqa~~la~~~~~~~is~GdllR~~i~~~s~~g~~i~~~~~~G~lVpd~i~~~lv~~~l~~~~~~~G 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAIKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCANG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 97999899999879999999998699178688999999873998899999999779877889999999999836565570
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC---------------------CCCCC
Q ss_conf 786380111245788876665312522210355542212566423311232333---------------------45565
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS---------------------EKSVR 139 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~---------------------~~~~R 139 (201)
|||||||||..||+.|+.++...+..++.||+|+||++++.+|+.+|+.++.+| ++.+|
T Consensus 81 ~IlDGfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKEAGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVTGEELIQR 160 (215)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79868999879999999999864998688999968899999998611567556764554578988666455433202579
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 6789899999999999975699999996797999938998899999999999999
Q gi|254780240|r 140 SDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 140 ~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~ 194 (201)
+||++|++++||+.|++++.|+++||+++++++.|||++++++||++|+++|+.+
T Consensus 161 ~DD~~e~i~~Rl~~y~~~t~pvi~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~ 215 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGKL 215 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9986999999999999988899999981797899989899899999999998449
No 4
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=388.51 Aligned_cols=183 Identities=36% Similarity=0.557 Sum_probs=172.6
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CC-C
Q ss_conf 699-98788999678999999971894895789999999600145666677641344554103566555420232-22-5
Q gi|254780240|r 2 RII-FLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLP-DC-D 78 (201)
Q Consensus 2 ~I~-i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~-~~-~ 78 (201)
+|| |+|+|||||||||.+|.+||||+|||+|||||+|+.++|+-|++++..|++|.|||.++|.+|++++|-+. +. .
T Consensus 4 kIiFivGGPGSGKGTQC~KiV~KYGfTHLSsGdLLR~Ev~SgS~rg~~L~aiMe~G~LVp~~~VL~Ll~dAm~~~~~~Gs 83 (191)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSSGDLLREEVASGSERGKQLQAIMESGELVPLDVVLDLLKDAMLAALGKGS 83 (191)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 56888658888840136898864188645406788987415781147899998618855506689999999998624898
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCHHHHHHHHHHHHH
Q ss_conf 317863801112457888766653125222103555422125664233112323334556--567898999999999999
Q gi|254780240|r 79 SGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSV--RSDDKYDVFLKRIENYRK 156 (201)
Q Consensus 79 ~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~--R~DD~~e~i~~Rl~~y~~ 156 (201)
+||+||||||-+.|.+.|+.-+. +|++|+++||+++|+.+|++.| ++.+. |.|||+++|++||..|+.
T Consensus 84 kGFLIDGYPRev~QG~eFe~~I~----~a~L~Ly~d~s~dTmv~RLL~R------a~~S~vkR~DDn~~TI~kRL~ty~~ 153 (191)
T TIGR01360 84 KGFLIDGYPREVKQGEEFEKRIA----PAKLVLYFDCSEDTMVKRLLKR------AETSGVKRVDDNEKTIKKRLETYYK 153 (191)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCC----CCCEEEEEECCHHHHHHHHHHH------HHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63112687332011245675159----9634643000444799999998------7624799889887899999999885
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 75699999996797999938998899999999999999
Q gi|254780240|r 157 TILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 157 ~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~ 194 (201)
+|.||++||+.+++++.|||++++|+||.+|++.|+.+
T Consensus 154 ~t~pvi~yYe~kg~~~~iNAEG~vddvF~~vv~~lD~~ 191 (191)
T TIGR01360 154 ATEPVIAYYESKGKLLKINAEGTVDDVFLQVVAALDKV 191 (191)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 02889986178871577427787758999999974269
No 5
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=0 Score=379.28 Aligned_cols=183 Identities=40% Similarity=0.725 Sum_probs=177.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+||+|+|||||||||||++|+++||++|||+||+||++++++|++|.++++++++|.+|||++++.++.++|.+.++.+|
T Consensus 2 ~riillG~PGSGKgTqa~~L~~~~~~~his~GdllR~~~~~~s~lg~~i~~~i~~G~lvpd~iv~~li~~~l~~~~~~~g 81 (185)
T PRK02496 2 ARLIFLGPPGAGKGTQAVVLAEHLQIPHISTGDILRQAITEQTPLGIKAQGYVDSGELVPDQLVLGLVQERLQQPDAANG 81 (185)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 18999799999989999999999699778888999999874998899999999879967728899999999848453387
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78638011124578887666531252221035554221256642331123233345565678989999999999997569
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILP 160 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~p 160 (201)
|||||||||..||+.|++++...+.+++.||+|+||++++.+|+++| +|.||++|++++||+.|+++|.|
T Consensus 82 ~ilDGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R----------~R~DD~~e~i~~Rl~~y~~~t~p 151 (185)
T PRK02496 82 WILDGFPRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERLLAR----------GRKDDTEEVIRRRLEVYREQTAP 151 (185)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78868988578899999999970567303333049999999998746----------76789889999999999999999
Q ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999679799993899889999999999999
Q gi|254780240|r 161 LSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 161 v~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
+++||++++.+++|||++++++||++|.++|++
T Consensus 152 vi~~y~~~~~~~~Idg~~~ieeV~~~I~~~l~~ 184 (185)
T PRK02496 152 LIDYYRDRQKLLTIDGNQSVEAVTTRLKAALAP 184 (185)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 999998469789998999989999999998638
No 6
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=100.00 E-value=0 Score=387.41 Aligned_cols=183 Identities=25% Similarity=0.518 Sum_probs=174.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-CCCE
Q ss_conf 99987889996789999999718948957899999996-001456666776413445541035665554202322-2531
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVD-RNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD-CDSG 80 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~-~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~-~~~g 80 (201)
+|++|||||||||||++|.++|+|+|||+|||||+|++ ++|+.|..|+.++.+|+.||.+++++||.++|.... ..+.
T Consensus 2 ~FvLGGPGSGKGTQCa~Iv~~f~~~HLSAGDLLR~E~~R~GSe~g~lI~~~IkeG~IVPs~VTv~LL~kai~~~~W~~~~ 81 (189)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGYVHLSAGDLLRAEIKREGSENGELIESYIKEGKIVPSEVTVELLKKAIKEDGWSSKK 81 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEHHEEEHHHHHHHHHHCCCCCCC
T ss_conf 77636989875678999998539468807478899861047888503774411583111223245888777631567882
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 78638011124578887666531252221--0355542212566423311232333455656789899999999999975
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDA--VIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTI 158 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~--vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~ 158 (201)
|+|||||||.+.-+.|.+.+....+.++. |++|+||++++.+|+++| |+.++|+|||.|+++||+..|+++|
T Consensus 82 FLIDGFPRN~eN~~~W~~~~P~~kv~~~~alVlF~dC~e~~m~~R~l~R------g~~SGR~DDN~esl~KR~~~y~~~t 155 (189)
T TIGR01359 82 FLIDGFPRNEENLEAWEKLMPDNKVNVKFALVLFFDCPEEVMIKRLLKR------GQTSGRVDDNIESLKKRFRTYNEET 155 (189)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCC------CCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 3662578888788889861787761202678999867971476443147------8947861071778888866540168
Q ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 699999996797999938998899999999999
Q gi|254780240|r 159 LPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 (201)
Q Consensus 159 ~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l 191 (201)
.|||+||+..++++.|||+.++|+||++|.+++
T Consensus 156 ~piIe~f~~~~kv~~i~a~~~ve~Vf~~v~~~f 188 (189)
T TIGR01359 156 LPIIEYFENKGKVKEINAEGSVEEVFEDVEKIF 188 (189)
T ss_pred CHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 302100002795798279999889999999970
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=0 Score=358.23 Aligned_cols=183 Identities=28% Similarity=0.500 Sum_probs=162.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC----
Q ss_conf 9699987889996789999999718948957899999996001456666776413445541035665554202322----
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD---- 76 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~---- 76 (201)
|||+|+|||||||||||++|+++|+++|||+||+||++++++|++|++++++|++|+||||+++.+++.++|.+..
T Consensus 1 M~iillGpPGsGKgT~a~~l~~~~~~~hiStGdllR~~i~~~t~lg~~ik~~i~~G~LVpD~iv~~lv~~~l~~~~~~~~ 80 (225)
T PTZ00088 1 MKIVLFGAPGVGKGTFAEILSKKEKLKHINMGNILRDEIKKESNIGKEIHKVVRSGNLVADELIIKIVHDEIAKILAKDG 80 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 97999899999879999999998799068789999999973998899999999779846689999999999984442464
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----------------------
Q ss_conf 2531786380111245788876665312522210355542212566423311232333----------------------
Q gi|254780240|r 77 CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS---------------------- 134 (201)
Q Consensus 77 ~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~---------------------- 134 (201)
+.+||||||||||+.||+.|++.. .++.||+|++|++++++|+++|+.++.+|
T Consensus 81 ~~~GfILDGfPRt~~QA~~L~~~~-----~id~vi~l~v~~~~li~Rl~gRr~c~~cg~~Yni~~~~~~~~~~pp~~p~~ 155 (225)
T PTZ00088 81 HFKGFILDGFPRNLLQCKELIEIT-----NIDLFVNIHLPRHILIKKILGRRICHECDKNFNIAHIQDDPFDMPPILPPK 155 (225)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHCCEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 347436527888779999999746-----788799996689999999970631333477110111234434577778876
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEECCCCC---HHHHHHHHH
Q ss_conf ---------45565678989999999999997569999999679-7999938998---899999999
Q gi|254780240|r 135 ---------EKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMG-CLYIIDGMLD---MDEVSRSID 188 (201)
Q Consensus 135 ---------~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~-~l~~Idg~~~---~~eV~~~I~ 188 (201)
++.+|.||++|+|++||+.|+++|.|+++||++++ .++.+|+... ++++++.+-
T Consensus 156 ~c~~c~g~~~L~~R~DD~~evI~~RL~~Y~~~T~PlidyYk~~k~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
T PTZ00088 156 DCEKCKGHPKLIKRKDDEEDIIAHRLDSYESDNIHIINFFKNEKCNLIDFEIQRGIRDFDDFYRILG 222 (225)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 4554589743068999999999999999999721899999816983798735777633999999997
No 8
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=0 Score=345.53 Aligned_cols=181 Identities=48% Similarity=0.789 Sum_probs=170.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 69998788999678999999971894895789999999600145666677641344554103566555420232225317
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGF 81 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g~ 81 (201)
||+|+|||||||||||++||++||++|||+||+||++++++|++|.++++++++|.+||++++++++.++|.+.++.+||
T Consensus 1 ri~l~G~PGsGKgTqa~~La~~~~~~~is~gdlLR~~~~~~t~~g~~i~~~~~~G~lvp~~i~~~l~~~~l~~~~~~~g~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 98998999998799999999997984676889999999749958999999998799778999999999998476543877
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------CCCCCCCCCHHHHH
Q ss_conf 86380111245788876665312522210355542212566423311232333-------------45565678989999
Q gi|254780240|r 82 ILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS-------------EKSVRSDDKYDVFL 148 (201)
Q Consensus 82 ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~-------------~~~~R~DD~~e~i~ 148 (201)
||||||||+.||+.|+..+.. ...|+.||+|+|+++++.+|+++|+.++.++ ...+|.||++|+++
T Consensus 81 ilDGfPR~~~Qa~~l~~~~~~-~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~R~DD~~e~i~ 159 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIK 159 (194)
T ss_pred EEECCCCCHHHHHHHHHHHHC-CCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 874797989999999999973-9987889999668999999996467677666624556677656666788898699999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHH
Q ss_conf 99999999756999999967979999389988999
Q gi|254780240|r 149 KRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEV 183 (201)
Q Consensus 149 ~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV 183 (201)
+|++.|++++.|+++||++++.+++|||++++++|
T Consensus 160 ~Rl~~y~~~~~pv~~~y~~~~~~~~Id~~~~~eeV 194 (194)
T cd01428 160 KRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 99999999988999999827978999799996749
No 9
>KOG3079 consensus
Probab=100.00 E-value=0 Score=339.57 Aligned_cols=182 Identities=34% Similarity=0.563 Sum_probs=172.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 999878899967899999997189489578999999960-0145666677641344554103566555420232225317
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR-NTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGF 81 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~-~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g~ 81 (201)
||++|+|||||||||.+++++|+|+|||+|||||+|+++ +|+.|..|+++|++|.+||.+++..|+.++|.+....+||
T Consensus 11 ifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~f 90 (195)
T KOG3079 11 IFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGF 90 (195)
T ss_pred EEEECCCCCCCCHHHHHHHHHCCCEEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99976898882269999999769546328799999880546767899999998699674899999999999965778838
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86380111245788876665312522210355542212566423311232333455656789899999999999975699
Q gi|254780240|r 82 ILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPL 161 (201)
Q Consensus 82 ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv 161 (201)
+||||||+.+|+..|+..+.. .+++|++|+|+++++++|+++| ++.+.|+||+.|++++|++.|+..+.||
T Consensus 91 LIDGyPR~~~q~~~fe~~i~~---~~~fvl~fdc~ee~~l~Rll~R------~q~~~R~DDn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079 91 LIDGYPRNVDQLVEFERKIQG---DPDFVLFFDCPEETMLKRLLHR------GQSNSRSDDNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred EECCCCCCHHHHHHHHHHHCC---CCCEEEEEECCHHHHHHHHHHH------CCCCCCCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 865898876889999988567---8777999868889999999960------6657878875577999999998700189
Q ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999679799993899889999999999999
Q gi|254780240|r 162 SSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 162 ~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
++||+++++++.||++.++++||.++.++++.
T Consensus 162 i~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079 162 IEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99987359688751779878899999987403
No 10
>pfam00406 ADK Adenylate kinase.
Probab=100.00 E-value=0 Score=339.91 Aligned_cols=165 Identities=44% Similarity=0.727 Sum_probs=156.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 98788999678999999971894895789999999600145666677641344554103566555420232225317863
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGFILD 84 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g~ilD 84 (201)
|+|||||||||||++||++||++|||+||+||++++++|++|+++++++++|.+|||+++++++.++|.+.++.+|||||
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~GdllR~~~~~~s~~g~~i~~~i~~G~lvpd~i~~~l~~~~l~~~~~~~g~iLD 80 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVVVGLVKERLEQNDCKNGFLLD 80 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 91889898599999999985990676999999998628879999999998699543099999999997074554866873
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC---------------------CCCCCCCC
Q ss_conf 801112457888766653125222103555422125664233112323334---------------------55656789
Q gi|254780240|r 85 GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASE---------------------KSVRSDDK 143 (201)
Q Consensus 85 GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~---------------------~~~R~DD~ 143 (201)
|||||..||+.|++++. .+..|+.||+|+||++++++|+.+|+.++.+|. +.+|+||+
T Consensus 81 GfPRt~~Qa~~l~~~l~-~~~~~~~Vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (186)
T pfam00406 81 GFPRTVPQAEALEEMLE-YGIKLDYVIEFDVPDEVLVERLTGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDN 159 (186)
T ss_pred CCCCCHHHHHHHHHHHH-CCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79898999999999997-49987779999737899999997664155668815666789521364544422353789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999999999975699999996797
Q gi|254780240|r 144 YDVFLKRIENYRKTILPLSSYYRDMGC 170 (201)
Q Consensus 144 ~e~i~~Rl~~y~~~~~pv~~~y~~~~~ 170 (201)
+|+|++||+.|+++|.||++||+++|+
T Consensus 160 ~e~i~~Rl~~y~~~t~pvi~~Y~~~gk 186 (186)
T pfam00406 160 EETVKKRLETYHKQTEPVIDYYKKKGK 186 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999998999999998489
No 11
>KOG3078 consensus
Probab=100.00 E-value=2.2e-43 Score=292.75 Aligned_cols=190 Identities=38% Similarity=0.649 Sum_probs=175.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
++.+++|||||||||||.+|++.|+.+||++||++|+++.++|++|.+++++|++|++|||++++.++..++....|.+|
T Consensus 16 ~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~~ 95 (235)
T KOG3078 16 VRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQKG 95 (235)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 47999718999977437799984477500347889999851581789999999732767599999999860256422256
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC---------------------CCCC
Q ss_conf 7863801112457888766653125222103555422125664233112323334---------------------5565
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASE---------------------KSVR 139 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~---------------------~~~R 139 (201)
|++||||||..||+.+ ...+..+|.||.|+||++.+.+|+.+|+.++.+|+ +.+|
T Consensus 96 ~ildg~Prt~~qa~~l----~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr 171 (235)
T KOG3078 96 FILDGFPRTVQQAEEL----LDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR 171 (235)
T ss_pred CCCCCCCCCHHHHHHH----HHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 0047888634889999----970688333788438889999997502335753320010026976556111234733328
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67898999999999999756999999967979999389988999999999999999
Q gi|254780240|r 140 SDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 140 ~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
+||++|++++||+.|++++.|+++||++++.+..++|.+ .++||..|...+....
T Consensus 172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078 172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV 226 (235)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCEEEECCCCC-HHHHHHHHHHHHHHHH
T ss_conf 555699999999998640367999998557255316863-2575799999987652
No 12
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-43 Score=290.70 Aligned_cols=177 Identities=42% Similarity=0.739 Sum_probs=170.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|||+|+|||||||||||++|+++|+++|||+|+++|+++...|++|.+++.+|++|++|||+++..++.+++...+|..|
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 97999899999889999999997699785522011110032368999999998758950417699799999975065772
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78638011124578887666531252221035554221256642331123233345565678989999999999997569
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILP 160 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~p 160 (201)
||+|||||++.||+.|+..+...+.+++.++.+++++++++.|+.+|.. |+||+++.+++|+..|++++.|
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---------r~dd~~~~~~~R~~~y~~~~~p 151 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---------REDDNEETVKKRLKVYHEQTAP 151 (178)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCC---------CCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9998998369999999999986399855260244778999999736654---------3346789999999998754683
Q ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9999996797999938998899999999999
Q gi|254780240|r 161 LSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 (201)
Q Consensus 161 v~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l 191 (201)
+++||+ ..|||.+++++|++++.+.+
T Consensus 152 l~~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 152 LIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred EEEEEE-----ECCCCCCCHHHHHHHHHHHH
T ss_conf 477775-----11467788999999999864
No 13
>PRK01184 hypothetical protein; Provisional
Probab=99.71 E-value=9.7e-16 Score=119.41 Aligned_cols=173 Identities=24% Similarity=0.324 Sum_probs=114.9
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH-HHH-----HHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 9699-9878899967899999997189489578999999960-014-----56666776413445541035665554202
Q gi|254780240|r 1 MRII-FLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR-NTL-----LGKQVKGSMESGSLISDAIVNQVVCDRIR 73 (201)
Q Consensus 1 m~I~-i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~-~s~-----~g~~i~~~l~~G~lvpd~ii~~li~~~l~ 73 (201)
|.|+ +.|+|||||+|.|.. .+++|++++++||++|+++.+ +.+ ++....+.-. ++= .+++.....+++.
T Consensus 1 M~iIGlTG~iGSGKstva~i-~~e~G~~vi~~~Divr~~v~~~g~~~~~~~~~~~~~~lR~--~~G-~~~~a~~~~~~i~ 76 (183)
T PRK01184 1 MMIIIVTGMPGSGKGEFSKI-ARELGIPVVVMGDVIREEVKKRGLPPTDENIGKVATDLRK--ELG-MDAVAIRTVPKIR 76 (183)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHHCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHC-CHHHHHHHHHHHH
T ss_conf 93999968998878999999-9977993998607789999983899977899999999998--719-5589999999997
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CHHHHHHHH
Q ss_conf 322253178638011124578887666531252221035554221256642331123233345565678--989999999
Q gi|254780240|r 74 LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDD--KYDVFLKRI 151 (201)
Q Consensus 74 ~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD--~~e~i~~Rl 151 (201)
.. ...-+|+||. |+..+++.|...+.. ..+|.+++|.++-++|+..| .|+|| +.|.+.+|-
T Consensus 77 ~~-~~~~~vidgi-r~~~E~~~~~~~~~~-----~~li~V~A~~~~R~eRl~~R----------~r~~D~~s~e~f~~rd 139 (183)
T PRK01184 77 EL-GSELVVVDGV-RGDAEVEYFRKEFED-----FILVAIHAPPETRFERLKKR----------GRSDDPKTWEELRERD 139 (183)
T ss_pred HC-CCCEEEEECC-CCHHHHHHHHHHCCC-----EEEEEEECCHHHHHHHHHHC----------CCCCCCCCHHHHHHHH
T ss_conf 03-7982898167-878999999974698-----49999989888999999846----------9988966799999999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999756999999967979999389988999999999999999876
Q gi|254780240|r 152 ENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKKC 198 (201)
Q Consensus 152 ~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~~ 198 (201)
. .+...++.+..+.. =+.|+.+++.++..++|.++|..+.+..
T Consensus 140 ~--~E~~~~i~~~i~~A--D~vI~N~gsleel~~~v~~~l~~i~~~~ 182 (183)
T PRK01184 140 E--RELSWGIGEAIALA--DYMIVNDCTLEEFKARVRKLLEEILSSR 182 (183)
T ss_pred H--HHHCCCHHHHHHHC--CEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9--87446777899879--9999879989999999999999997069
No 14
>PRK08356 hypothetical protein; Provisional
Probab=99.66 E-value=7.6e-15 Score=113.79 Aligned_cols=161 Identities=20% Similarity=0.295 Sum_probs=107.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH---------------------HHHHHHHHHHHCCCCC
Q ss_conf 9699987889996789999999718948957899999996001---------------------4566667764134455
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNT---------------------LLGKQVKGSMESGSLI 59 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s---------------------~~g~~i~~~l~~G~lv 59 (201)
|-|-|.|.|||||+|+|+.| +++|++++|++|.+|+.+..++ .+|..+++..
T Consensus 6 mIIgitG~~gSGK~tva~~l-~~~G~~~~s~sd~lrd~~~~~~~~~~~~~e~~~~~e~tre~l~~~~~~LR~~~------ 78 (195)
T PRK08356 6 MIVGIAGKIAAGKTTVAKFL-EELGFCRISCSEPLIDILTGNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKY------ 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHCCCEEEECCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH------
T ss_conf 69998589988789999999-98699288422789999840232000115555147998899999999999986------
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 41035665554202322253178638011124578887666531252221035554221256642331123233345565
Q gi|254780240|r 60 SDAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVR 139 (201)
Q Consensus 60 pd~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R 139 (201)
-.+++..++.++++.. +.+||||. |+..+++.|.+. ...+|.+++|.++-.+|+..|. |
T Consensus 79 G~~i~a~~~~~~i~~~---~~vVIdgi-R~~~Eve~lk~~-------~~~lI~V~A~~~~R~eRl~~Rg----------r 137 (195)
T PRK08356 79 GEDILIRLAVDKLRHC---KNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRG----------A 137 (195)
T ss_pred CCHHHHHHHHHHHHCC---CCEEEECC-CCHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHCC----------C
T ss_conf 9258999999997448---97899489-988999999965-------9979999677878999999768----------9
Q ss_pred CCC----CHHHHHHHHHHHHH---HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 678----98999999999999---756999999967979999389988999999999999999
Q gi|254780240|r 140 SDD----KYDVFLKRIENYRK---TILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 140 ~DD----~~e~i~~Rl~~y~~---~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
+|| +.|.+.+|=+ ... ....+++.. .+ .|..+++.++.+++|..+|.+++
T Consensus 138 ~~D~~~~s~e~fl~~d~-~e~~~~~~~~~i~~A----Dy-~I~N~gtleel~~~i~~il~~i~ 194 (195)
T PRK08356 138 EKDRGIKSLEDLLKFDE-WEEKLYQTTKLKDKA----DY-VIVNEGTLEELRKKVEEILRELK 194 (195)
T ss_pred CCCCCCCCHHHHHHHHH-HHHHHCCHHHHHHHC----CE-EEECCCCHHHHHHHHHHHHHHHC
T ss_conf 88865042999998648-888604878899879----99-99829989999999999999833
No 15
>PRK03839 putative kinase; Provisional
Probab=99.58 E-value=9.4e-14 Score=106.95 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=98.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|.|+|.|.||+||+|+|+.||+++|+.|++.+++..+. + ++..- +...-+..+-+. +.+...-...+
T Consensus 1 M~I~ITGTPGtGKTTva~~La~~lg~~~i~v~~la~~~---~--~~~~~----d~~~~iD~d~l~----~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTISKLLAEKLGYEYVNLRDFALEK---G--IGEEK----DDELEIDVDELA----YFVEEEFKGKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHC---C--CCCCC----CCCCCCCHHHHH----HHHHHHHCCCC
T ss_conf 98999789999989999999997698798799999983---9--98676----775046599999----99998734898
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHH
Q ss_conf 786380111245788876665312522210355542212566423311232333455656789899999999--999975
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIE--NYRKTI 158 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~--~y~~~~ 158 (201)
+|+||..- .+ .++|+||+|.|+.+++.+|+..|.... +.|+..++ .+.--.
T Consensus 68 ~ivd~H~~---------h~-----~p~D~VIVLR~~P~iL~~RL~~RgYs~-------------~KI~ENveaEil~vil 120 (180)
T PRK03839 68 VVLDGHLS---------HL-----MPADLVIVLRAHPKLIAERLKERGYSK-------------KKIGENVEAELVDVIL 120 (180)
T ss_pred EEEEEECC---------CC-----CCCCEEEEEECCHHHHHHHHHHCCCCH-------------HHHHHHHHHHHHHHHH
T ss_conf 89986431---------46-----368779999788699999999769998-------------9999999999999999
Q ss_pred HHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHH
Q ss_conf 6999999967979999389-98899999999999999
Q gi|254780240|r 159 LPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 159 ~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~ 194 (201)
...+ +....+.+||.+ .+|++|+..|.+++..-
T Consensus 121 ~Ea~---e~~~~~~eidtt~~~pe~v~~~I~~~i~~~ 154 (180)
T PRK03839 121 IEAL---EEHENVIEVDTTNKTPEEVVEEILNLIKSG 154 (180)
T ss_pred HHHH---HHCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9999---843988999899999999999999999579
No 16
>PRK13973 thymidylate kinase; Provisional
Probab=99.55 E-value=6.8e-13 Score=101.56 Aligned_cols=176 Identities=19% Similarity=0.160 Sum_probs=95.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCH------------HHH
Q ss_conf 9998788999678999999971---8948957899999996001456666776413445--5410------------356
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL--ISDA------------IVN 65 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l--vpd~------------ii~ 65 (201)
|+|-|..||||+||+++|++++ |+.++-+ |+ -.+|+.|..+++++.+|.. ++.. .+.
T Consensus 6 Iv~EGiDGsGKsTq~~~L~~~L~~~g~~v~~t----re--Pg~t~~~e~ir~~ll~~~~~~~~~~~e~lLfaA~R~eh~~ 79 (216)
T PRK13973 6 ITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT----RE--PGGSPGAEAIRHVLLSGAAELYGPAMEALLFAAARDDHVE 79 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----EC--CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99889999989999999999999779957994----09--8998408999999846665789989999999999999999
Q ss_pred HHHHHHHCCCCCCCEEEECCC----------HHHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 655542023222531786380----------111245--78887666531252221035554221256642331123233
Q gi|254780240|r 66 QVVCDRIRLPDCDSGFILDGY----------PRTVDQ--AKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133 (201)
Q Consensus 66 ~li~~~l~~~~~~~g~ilDGF----------PRt~~Q--a~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~ 133 (201)
.++...+.+. .-+|.|-| -+.+.. ...++.+ ...+..||++|+|++|.++..+|+..|....
T Consensus 80 ~~I~paL~~g---~~VI~DRy~~Ss~AYQg~~~~~~~~~l~~l~~~-~~~~~~PDlti~LDv~~e~a~~R~~~R~~~~-- 153 (216)
T PRK13973 80 EVIRPALARG---KIVLCDRFIDSTRAYQGVTGNVDPALLAALERV-AINGVMPDLTLILDIPAEVGLERAAKRRGSE-- 153 (216)
T ss_pred HHHHHHHHCC---CEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCCCEEEEECCCHHHHHHHHHHHCCCC--
T ss_conf 9999999779---989867862579999774278898999999999-9679999989998188899999999835776--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHC-CCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34556567898999999999999756-999999967-9799993899889999999999999998763
Q gi|254780240|r 134 SEKSVRSDDKYDVFLKRIENYRKTIL-PLSSYYRDM-GCLYIIDGMLDMDEVSRSIDSLLVSVRKKCS 199 (201)
Q Consensus 134 ~~~~~R~DD~~e~i~~Rl~~y~~~~~-pv~~~y~~~-~~l~~Idg~~~~~eV~~~I~~~l~~~~k~~~ 199 (201)
..+.+.+.--.|++... .-++..++. ..++.|||++++++|+++|.++++....+..
T Consensus 154 ---------~~dr~E~~~~~f~~kVr~~Y~~la~~~~~r~~vIDa~~s~eeV~~~I~~~v~~~L~e~~ 212 (216)
T PRK13973 154 ---------TPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDADASPEAVAAEIWAAVDQRLLEAA 212 (216)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf ---------30025564799999999999999985988789971999999999999999999862100
No 17
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=99.54 E-value=3.7e-14 Score=109.52 Aligned_cols=165 Identities=25% Similarity=0.286 Sum_probs=101.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCC
Q ss_conf 969998788999678999999971894895789999999-60014566667764134455410356655542023-2225
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV-DRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRL-PDCD 78 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~-~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~-~~~~ 78 (201)
|.|+|=|||||||||+|+.||++|+|.|||.|++ |+-. +.|- .+.+.-.+- -+.-+-+.+-+++.. ...+
T Consensus 1 M~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~i-RelA~~~Gl----dl~E~~~ae---e~~eIDk~iD~~~~E~A~~~ 72 (173)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDI-RELAEKMGL----DLAESKYAE---ENPEIDKKIDRRIREIAEKE 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCHH-HHHHHHCCC----CHHHHHHHC---CCCCCCHHHHHHHHHHHCCC
T ss_conf 9788735896864789999998639831202007-889864298----877734430---58631167537885543048
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHH
Q ss_conf 317863801112457888766653-12522210355542212566423311232333---45565678989999999999
Q gi|254780240|r 79 SGFILDGYPRTVDQAKSLHAFISN-MDCAIDAVIELRVEDASMFKRIQVRVLEAIAS---EKSVRSDDKYDVFLKRIENY 154 (201)
Q Consensus 79 ~g~ilDGFPRt~~Qa~~l~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~---~~~~R~DD~~e~i~~Rl~~y 154 (201)
+.+||.| .|-.|+.. .|..+|+.|+|.+|.++--.|+..|---+.+. +... -||.-++||..|
T Consensus 73 ~nvvlEs---------rlagW~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k~~~~A~~~~~~----REe~e~rRy~~i 139 (173)
T TIGR02173 73 KNVVLES---------RLAGWILKKNGEYADVKIYLKAPLEVRARRIAKRENKDLTVALKEIIE----REESEKRRYKEI 139 (173)
T ss_pred CCEEEEE---------HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHHH
T ss_conf 9668852---------054331157889675678860883332433211368898999999999----887622345665
Q ss_pred HHHHHHHHHHHHHCCC-EEEECCCC-CHHHHHHHHHHHHH
Q ss_conf 9975699999996797-99993899-88999999999999
Q gi|254780240|r 155 RKTILPLSSYYRDMGC-LYIIDGML-DMDEVSRSIDSLLV 192 (201)
Q Consensus 155 ~~~~~pv~~~y~~~~~-l~~Idg~~-~~~eV~~~I~~~l~ 192 (201)
+. ++. .+... =..||++. ++++|..-|...|+
T Consensus 140 Yg-----IDi-dDlsiYDLvinT~~~~~~~v~~iv~~ald 173 (173)
T TIGR02173 140 YG-----IDI-DDLSIYDLVINTSNLDVDEVSDIVLDALD 173 (173)
T ss_pred CC-----CCC-CCCEEEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 25-----023-43222200334476681269999998609
No 18
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.53 E-value=3.5e-13 Score=103.33 Aligned_cols=168 Identities=21% Similarity=0.217 Sum_probs=101.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH-HH---HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 96999878899967899999997189489578999999960-01---456666776413445541035665554202322
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR-NT---LLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD 76 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~-~s---~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~ 76 (201)
|+|.+-|||||||+|+|+.||++||++|+|.|+++|+..++ +. ++.+.+.+. | -+-..+-.+....-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~-------p--~iD~~iD~rq~e~a 71 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEED-------P--EIDKEIDRRQKELA 71 (179)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCHHHHHHHHHCC-------C--HHHHHHHHHHHHHH
T ss_conf 97996179999702799999998297156212799999998399999999987519-------2--16699889999998
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCHHHHHHHHHH
Q ss_conf 253178638011124578887666531252221035554221256642331123233---34556567898999999999
Q gi|254780240|r 77 CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA---SEKSVRSDDKYDVFLKRIEN 153 (201)
Q Consensus 77 ~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~---~~~~~R~DD~~e~i~~Rl~~ 153 (201)
.+.++|++| .|-.++.. ...++-|+|.+|.++-.+|+..|-.-... .++.. .++.-++|+..
T Consensus 72 ~~~nvVleg---------rLA~Wi~k--~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~----RE~se~kRY~~ 136 (179)
T COG1102 72 KEGNVVLEG---------RLAGWIVR--EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVE----REESEKKRYKK 136 (179)
T ss_pred HCCCEEEHH---------HHHHHHHC--CCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHH
T ss_conf 728958700---------45788733--5654688885759999999998608989999999999----88999999999
Q ss_pred HHHHHHHHHHHHHHCCC-EEEECCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 99975699999996797-99993899-88999999999999999876
Q gi|254780240|r 154 YRKTILPLSSYYRDMGC-LYIIDGML-DMDEVSRSIDSLLVSVRKKC 198 (201)
Q Consensus 154 y~~~~~pv~~~y~~~~~-l~~Idg~~-~~~eV~~~I~~~l~~~~k~~ 198 (201)
|+. ++. .+... -..||.+. ++++|+.-+...++.+..+.
T Consensus 137 ~Yg-----IDi-dDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~~ 177 (179)
T COG1102 137 IYG-----IDI-DDLSIYDLVINTSKWDPEEVFLILLDAIDALSIKE 177 (179)
T ss_pred HHC-----CCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 858-----787-66636778875366788899999999987421346
No 19
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.51 E-value=1.7e-13 Score=105.41 Aligned_cols=169 Identities=23% Similarity=0.246 Sum_probs=90.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHH-----------H
Q ss_conf 969998788999678999999971---894895789999999600145666677641344--554103-----------5
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGS--LISDAI-----------V 64 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~--lvpd~i-----------i 64 (201)
|-|+|-|..||||+||+++|++++ |...+.+ |+ -.+|+.|..+++++.++. +-|... +
T Consensus 4 ~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v~~t----~e--P~~t~~g~~ir~~~~~~~~~~~~~~~~lLf~adR~~~~ 77 (204)
T PRK00698 4 MFITIEGIDGAGKSTQIELLAERLEEQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEPMDDKTELLLFLAARAQHL 77 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----EC--CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 1999988999989999999999999679978998----69--99980699999998277767998999999999999999
Q ss_pred HHHHHHHHCCCCCCCEEEECCCH----------HHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 66555420232225317863801----------11245--7888766653125222103555422125664233112323
Q gi|254780240|r 65 NQVVCDRIRLPDCDSGFILDGYP----------RTVDQ--AKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAI 132 (201)
Q Consensus 65 ~~li~~~l~~~~~~~g~ilDGFP----------Rt~~Q--a~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~ 132 (201)
..++...+.+ ..-+|.|-|- +.... ...++.... ....||++|+|++|.+++.+|+..|...
T Consensus 78 ~~~I~p~L~~---g~iVI~DRy~~S~~aYqg~~~~~~~~~i~~l~~~~~-~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~-- 151 (204)
T PRK00698 78 EEVIKPALAR---GKWVISDRFIDSSLAYQGGGRGLDIDLLAALNRFAL-GGFRPDLTLYLDVPPEVGLARIAARGEL-- 151 (204)
T ss_pred HHHHHHHHHC---CCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCCCEEEEEECCHHHHHHHHHHCCCC--
T ss_conf 9999988836---998998364050999998607999999999998872-7999985899817999999999837986--
Q ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 3345565678-9899999999999975699999996-79799993899889999999999999
Q gi|254780240|r 133 ASEKSVRSDD-KYDVFLKRIENYRKTILPLSSYYRD-MGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 133 ~~~~~~R~DD-~~e~i~~Rl~~y~~~~~pv~~~y~~-~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
.|-|. +.+-..+--+.| ++..+. ...++.|||++++++|+++|.+++..
T Consensus 152 -----dr~e~~~~~~~~kv~~~Y-------~~l~~~~~~~~~~IDa~~~~eeV~~~I~~~i~~ 202 (204)
T PRK00698 152 -----DRIEQEGLDFFERVREGY-------LELAAADPERIVVIDASQSLEEVHEDILAVLKA 202 (204)
T ss_pred -----CCHHHHHHHHHHHHHHHH-------HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf -----420150099999999999-------999985889689984999999999999999996
No 20
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.49 E-value=1.8e-12 Score=98.95 Aligned_cols=172 Identities=18% Similarity=0.215 Sum_probs=93.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHH--------
Q ss_conf 969998788999678999999971---8948957899999996001456666776413445--541035665--------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL--ISDAIVNQV-------- 67 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l--vpd~ii~~l-------- 67 (201)
|-|+|-|+.|||||||+++|++++ |...+-+.. -.+++.|..+++++..+.. ++.....-+
T Consensus 1 m~IviEG~dGsGKsT~~~~L~~~L~~~g~~v~~~~e------P~~~~~~~~ir~~l~~~~~~~~~~~~~~lL~~a~R~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC------CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989998998999999999999999977993899869------99984678999987333545689999999999999999
Q ss_pred HHHHHCCC-CCCCEEEECCCHHH-HH-HH----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 55420232-22531786380111-24-57----------88876665312522210355542212566423311232333
Q gi|254780240|r 68 VCDRIRLP-DCDSGFILDGYPRT-VD-QA----------KSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS 134 (201)
Q Consensus 68 i~~~l~~~-~~~~g~ilDGFPRt-~~-Qa----------~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~ 134 (201)
+.+.+... .....+|.|-|.-+ .+ |. ..+..+ ......||++|+|++|.+++.+|+..|....
T Consensus 75 ~~~~i~~~l~~~~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~-~~~~~~PDl~i~Ld~~pe~~~~Ri~~R~~~~--- 150 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDL-ATGGLKPDLTILLDIDPEVGLARIEARGRDD--- 150 (200)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCCCEEEEEECCHHHHHHHHHHCCCCC---
T ss_conf 999999888459989984551128888774069999999999987-7469999989998179999999998468987---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 455656789899999999999975699999996-7979999389988999999999999
Q gi|254780240|r 135 EKSVRSDDKYDVFLKRIENYRKTILPLSSYYRD-MGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 135 ~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~-~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
.....+.+-..+--+.|.+ .++. ...++.|||++++++|+++|.+.|.
T Consensus 151 ---~~e~~~~~~~~kv~~~Y~~-------~~~~~~~~~~vIDa~~~~eev~~~I~~~i~ 199 (200)
T cd01672 151 ---RDEQEGLEFHERVREGYLE-------LAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred ---HHHHCCHHHHHHHHHHHHH-------HHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf ---2765159999999999999-------997588978998699999999999999971
No 21
>PRK13974 thymidylate kinase; Provisional
Probab=99.46 E-value=2e-12 Score=98.57 Aligned_cols=172 Identities=23% Similarity=0.270 Sum_probs=93.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-----CEECHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHH--HH
Q ss_conf 9998788999678999999971---89-----4895789999999600145666677641--34455410356655--54
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NV-----PQLSTGDMLRAEVDRNTLLGKQVKGSME--SGSLISDAIVNQVV--CD 70 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~-----~~is~gdllR~~~~~~s~~g~~i~~~l~--~G~lvpd~ii~~li--~~ 70 (201)
|+|-|.-|||||||+++|++.+ |+ ..+. .|+ -.+|++|+.+++++. .+...|+....-++ .+
T Consensus 6 Iv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~----~re--Pg~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~Ad 79 (212)
T PRK13974 6 IVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLII----TRE--PGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAAD 79 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE----ECC--CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 998899999899999999999986587535861577----149--99980699999998066545688879999999999
Q ss_pred H-------HCCC-CCCCEEEECCC----------HHHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2-------0232-22531786380----------111245--78887666531252221035554221256642331123
Q gi|254780240|r 71 R-------IRLP-DCDSGFILDGY----------PRTVDQ--AKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 71 ~-------l~~~-~~~~g~ilDGF----------PRt~~Q--a~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
| +... ....-+|.|-| .|.... ...++.+ ...+..||++|+|++|.++..+|..+|..+
T Consensus 80 R~e~~~~~I~paL~~G~iVI~DRY~~St~AYQg~~~g~~~~~i~~l~~~-~~~~~~PDlt~~LDv~~e~a~~R~~~~~~d 158 (212)
T PRK13974 80 RAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESI-ATQGLSPDLTFFLEISVEESIRRRKNRKPD 158 (212)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCCCEEEEECCCHHHHHHHHHCCCCC
T ss_conf 9999999999998379999978832359999886269999999999998-747999998999769758899988477634
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 233345565678989999999999997569999999679799993899889999999999999998
Q gi|254780240|r 131 AIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 131 ~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k 196 (201)
|-+-......+|.+..+.. ..+...++.|||++++++|+++|.+.|...-+
T Consensus 159 --------r~e~e~~~f~~kVr~~y~~-------la~~~~~~~IDa~~~ieeV~~~I~~~i~~~~~ 209 (212)
T PRK13974 159 --------RIEAEGIEFLERVAEGFAL-------IAEERNWKVISADQSIETISNEIKETLLNNFS 209 (212)
T ss_pred --------CHHCCCHHHHHHHHHHHHH-------HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf --------3101619999999999999-------84739879998999999999999999999973
No 22
>PRK04182 cytidylate kinase; Provisional
Probab=99.45 E-value=3.8e-13 Score=103.15 Aligned_cols=170 Identities=24% Similarity=0.241 Sum_probs=98.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 96999878899967899999997189489578999999960-01456666776413445541035665554202322253
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR-NTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~-~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
|+|.|-|++||||+|+|+.||+++|+++++.|+++|+..+. +-++.. ...+..+ -| + +-..+.+.+...-...
T Consensus 1 m~ItI~g~~GSGk~tIak~LA~~lg~~~~d~g~i~r~~a~~~g~~~~~-~~~~~e~---~~-~-id~~~~~~~~~~a~~~ 74 (178)
T PRK04182 1 MRITISGPPGSGKTTVARLLAEKLGLKLVSAGDIFRELARERGMSLEE-FNKYAEE---DP-E-IDKEIDRRQLELAKRG 74 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHHCCCCHHH-HHHHHHC---CH-H-HHHHHHHHHHHHHHCC
T ss_conf 989995899888799999999995993872129999999985999999-9999851---92-6-8999999999998539
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 17863801112457888766653125222103555422125664233112323334556567898999999999999756
Q gi|254780240|r 80 GFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTIL 159 (201)
Q Consensus 80 g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~ 159 (201)
++|++| |...- .+.+ .+++-|+|.+|.+...+|+..|-.-+ .++-...+.+|-..-. .
T Consensus 75 ~~Vi~G--R~~~~------il~~---~~~l~ifl~A~~e~R~~Ri~~r~~~~--------~~~a~~~i~~rd~~~~---~ 132 (178)
T PRK04182 75 NVVLEG--RLAGW------IVKN---YADLKIYLKAPLEVRAKRIAEREGIS--------VEEALEETIEREESEA---K 132 (178)
T ss_pred CEEEEC--CCCCE------EECC---CCCEEEEEECCHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHH---H
T ss_conf 989983--88876------9727---98779999899999999999732999--------9999999999899999---9
Q ss_pred HHHHHHHH-----CCCEEEECCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996-----7979999389-988999999999999999876
Q gi|254780240|r 160 PLSSYYRD-----MGCLYIIDGM-LDMDEVSRSIDSLLVSVRKKC 198 (201)
Q Consensus 160 pv~~~y~~-----~~~l~~Idg~-~~~~eV~~~I~~~l~~~~k~~ 198 (201)
--..||.. ...-..||.+ .++++|.+.|.+.|+.+.+++
T Consensus 133 r~~~~y~~~~~d~~~ydl~Idts~l~~d~vv~~I~~~i~k~l~~~ 177 (178)
T PRK04182 133 RYLEYYGIDIDDLSIYDLVINTSKWSPEEVFEIILAAIDKLLLAK 177 (178)
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999860899775310748998999999999999999999998447
No 23
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=99.43 E-value=1.5e-12 Score=99.32 Aligned_cols=163 Identities=24% Similarity=0.263 Sum_probs=88.9
Q ss_pred EECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHH-------HC
Q ss_conf 98788999678999999971---8948957899999996001456666776413445541035-6655542-------02
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIV-NQVVCDR-------IR 73 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii-~~li~~~-------l~ 73 (201)
|-|+.||||+||+++|++++ |+..+-+ |+ ..+|++|..+++++.....+..... .-+..++ +.
T Consensus 1 ~EGiDGsGKsTq~~~L~~~L~~~g~~v~~~----~e--p~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~~i~ 74 (186)
T pfam02223 1 IEGLDGAGKTTQAELLKERLKEQGIKVVLT----RE--PGGTPIGEKIRELLLRNEELSPLTEALLFAADRIEHLEEKIK 74 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEE----EC--CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979999899999999999999879908997----49--999837999999985012589999999999999999999999
Q ss_pred CC-CCCCEEEECCCHH-HHH-HHH------HHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 32-2253178638011-124-578------8876665--3125222103555422125664233112323334556567-
Q gi|254780240|r 74 LP-DCDSGFILDGYPR-TVD-QAK------SLHAFIS--NMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSD- 141 (201)
Q Consensus 74 ~~-~~~~g~ilDGFPR-t~~-Qa~------~l~~~l~--~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~D- 141 (201)
.. ....-+|.|-|-- +++ |+- .+...+. .....||++|+|++|.+++.+|+..|... .+.+
T Consensus 75 ~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~PDlti~Ldv~pe~~~~Ri~~R~~~-------~~~e~ 147 (186)
T pfam02223 75 PALKQGKTVICDRYLFSSIAYQGAAGGLGLDLVLSLNPDVPGPKPDLTFLLDVDPEVALKRLRRRGEL-------DEFEF 147 (186)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCC-------CHHHH
T ss_conf 99976998996073134899876204778999999987206789998999838999999999866875-------62765
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
Q ss_conf 8989999999999997569999999679799993899889999999
Q gi|254780240|r 142 DKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSI 187 (201)
Q Consensus 142 D~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I 187 (201)
.+.+-..+-.+.|. +.+++...++.|||++++++|+++|
T Consensus 148 e~~~~~~kv~~~Y~-------~l~~~~~~~~~IDa~~~i~ev~~~I 186 (186)
T pfam02223 148 EQLDFLRKVRERYL-------ELAKDDERILIIDASNSIEEVHEEI 186 (186)
T ss_pred CCHHHHHHHHHHHH-------HHHCCCCCEEEEECCCCHHHHHHHC
T ss_conf 17999999999999-------9976999789987999999997049
No 24
>PRK07933 thymidylate kinase; Validated
Probab=99.42 E-value=1.1e-11 Score=93.91 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=91.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHH-------
Q ss_conf 969998788999678999999971---89489578999999960014566667764134--455410356655-------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESG--SLISDAIVNQVV------- 68 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G--~lvpd~ii~~li------- 68 (201)
|-|.|-|.-||||+||+++|++++ |...+.+ |+--..+|+.|..+++++... .+..+-....++
T Consensus 1 m~I~fEGiDGsGKSTq~~~L~~~L~~~g~~v~~~----reP~~g~~~~g~~ir~~l~~~~~~~~~~~~~~~lLfaadR~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEAAGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE----ECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9899988999989999999999999779907998----468999984899999998088777657779999999999999
Q ss_pred -HHHHCCCCCCCE-EEECCCHHH-H-HHH--------HHHHHHH-----HHHC-CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -542023222531-786380111-2-457--------8887666-----5312-52221035554221256642331123
Q gi|254780240|r 69 -CDRIRLPDCDSG-FILDGYPRT-V-DQA--------KSLHAFI-----SNMD-CAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 69 -~~~l~~~~~~~g-~ilDGFPRt-~-~Qa--------~~l~~~l-----~~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
.+.|...-.... +|.|=|=-+ + -|+ ..+..++ ...+ ..||++|+||+|.++..+|+..|...
T Consensus 77 ~~~~I~paL~~G~~VI~DRy~~Ss~AYQ~a~~~~~~~~~~~~~i~~l~~~~~~~~~PDlti~lDv~~e~a~~R~~~R~~~ 156 (213)
T PRK07933 77 ARDELAGLVAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPAELAAERARRRAAR 156 (213)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCC
T ss_conf 99999999978898998174306898611014687542689999999877507999986889538999999999832456
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HH--CCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 23334556567898999999999999756999999----96--7979999389988999999999999
Q gi|254780240|r 131 AIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYY----RD--MGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 131 ~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y----~~--~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
...|..|..|. . ..|++. |.+-| ++ ...++.|||++++++|+++|.+.|.
T Consensus 157 -----~~~~~~Dr~E~--~--~~f~~r---Vr~~y~~lA~~~~p~R~~vIDa~~~~e~V~~~I~~~l~ 212 (213)
T PRK07933 157 -----DADRARDAYER--D--DGLQQR---TGAVYAELAARGWGGPWLVVDPDVDPAALAARLAAALG 212 (213)
T ss_pred -----CCCCCCCCHHH--H--HHHHHH---HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf -----66642130230--4--899999---99999999972579988998199999999999998748
No 25
>PRK13975 thymidylate kinase; Provisional
Probab=99.41 E-value=8.8e-12 Score=94.58 Aligned_cols=174 Identities=25% Similarity=0.285 Sum_probs=94.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH------HCCCC
Q ss_conf 999878899967899999997189489578999999960014566667764134455410356655542------02322
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDR------IRLPD 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~------l~~~~ 76 (201)
|+|-|+-||||+||+++|++++..... |+ ..+|+.|..+++++....+-|.....=+..+| +...-
T Consensus 5 I~fEGiDGsGKsTq~~lL~~~L~~~~t------~e--pg~t~~ge~IR~~l~~~~~~~~~~~LLfaA~R~~~~~~i~~~l 76 (198)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNAKFT------FE--PTDGKIGKSIREILSGSECQKETLALLFAADRVEHVSEIEEDL 76 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEE------EC--CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999899888699999999997387488------89--7998447999999826899859999999999999999999998
Q ss_pred CCCEEEECCCHH-HHH-HH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 253178638011-124-57-----88876665312522210355542212566423311232333455656789899999
Q gi|254780240|r 77 CDSGFILDGYPR-TVD-QA-----KSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLK 149 (201)
Q Consensus 77 ~~~g~ilDGFPR-t~~-Qa-----~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~ 149 (201)
..+-+|.|-|=- |++ |+ ..+-..+......||++|+|++|.++..+|+.+|..+. . ++.+ +.+
T Consensus 77 ~~~~VI~DRy~~St~AYQ~~~g~~~~~i~~l~~~~~~PDlt~~LDi~~e~~l~R~~~r~~~~--------~-e~~~-f~~ 146 (198)
T PRK13975 77 KKSHVVSDRYVYSSIVYQSSQGIDKDFIYSINDYAKIPDLVVLLDVDLEEALKRMESREKEI--------F-EKIE-IQK 146 (198)
T ss_pred HCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCHH--------H-HHHH-HHH
T ss_conf 68988972761239998561399999999999679999989997398999999876357315--------5-4299-999
Q ss_pred HH-HHHHHHHHHHHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHHHH
Q ss_conf 99-9999975699999996797999938-998899999999999999
Q gi|254780240|r 150 RI-ENYRKTILPLSSYYRDMGCLYIIDG-MLDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 150 Rl-~~y~~~~~pv~~~y~~~~~l~~Idg-~~~~~eV~~~I~~~l~~~ 194 (201)
|. +.|.+-...=-+-|.....++.||+ ++++++|+++|.+.+...
T Consensus 147 kVr~~yl~la~~~~~r~~~~~~~i~Id~~~ksieeV~~~I~~~i~~~ 193 (198)
T PRK13975 147 KIKEGYYNLINSENEKFMPKYGFIVIDTTSKSIEEVFNEILNAILDK 193 (198)
T ss_pred HHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999997482310012571899899999999999999999986
No 26
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.41 E-value=5.5e-12 Score=95.87 Aligned_cols=152 Identities=19% Similarity=0.255 Sum_probs=95.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|+|+|.|.||.||||.|++|+ ++|+.+++.+++.++. +--.+.. + ..+..+-| ..-+..++...-...+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~---~~~~~~d--e--~r~s~~vD---~d~~~~~le~~~~~~~ 69 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN---GLYTEYD--E--LRKSVIVD---VDKLRKRLEELLREGS 69 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCEEEHHHHHHHC---CCEECCC--C--CCCEEEEE---HHHHHHHHHHHHCCCC
T ss_conf 937993799986687999999-8298466199999866---9711437--7--66158866---7999988888750588
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH-----HHHHH
Q ss_conf 7863801112457888766653125222103555422125664233112323334556567898999999-----99999
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKR-----IENYR 155 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~R-----l~~y~ 155 (201)
.|+|+ .+-+++. .+|+||+|.|+.+.+.+|+.+|..++ +.|... +....
T Consensus 70 ~Ivd~---------H~~hl~~----~~dlVvVLR~~p~~L~~RLk~RGy~~-------------eKI~ENveAEi~~vi~ 123 (180)
T COG1936 70 GIVDS---------HLSHLLP----DCDLVVVLRADPEVLYERLKGRGYSE-------------EKILENVEAEILDVIL 123 (180)
T ss_pred EEEEC---------HHHHCCC----CCCEEEEECCCHHHHHHHHHHCCCCH-------------HHHHHHHHHHHHHHHH
T ss_conf 47612---------6662178----78889997189899999998769987-------------8988779999999999
Q ss_pred HHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 9756999999967979999389-988999999999999999
Q gi|254780240|r 156 KTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 156 ~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~~ 195 (201)
. ...+.| ..+..||.+ .+++++.+.|..++..-+
T Consensus 124 ~---EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~~~~ 158 (180)
T COG1936 124 I---EAVERF---EAVIEVDTTNRSPEEVAEEIIDIIGGGR 158 (180)
T ss_pred H---HHHHHC---CCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 9---999734---7649997899999999999999970334
No 27
>PRK08118 topology modulation protein; Reviewed
Probab=99.40 E-value=1.6e-12 Score=99.21 Aligned_cols=98 Identities=28% Similarity=0.404 Sum_probs=75.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 69998788999678999999971894895789999999600145666677641344554103566555420232225317
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGF 81 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g~ 81 (201)
||.|+|+|||||+|.|+.|++++|++|+....+.-. ..+...|.+....++.+.+.+ ..|
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~----------------~~w~~~~~~e~~~~~~~~~~~----~~W 62 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK----------------PNWEGVPKEEQRTVQNELVKE----DEW 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEEC----------------CCCCCCCHHHHHHHHHHHHHC----CCE
T ss_conf 799988999879999999999889697964434766----------------899468889999999999838----987
Q ss_pred EECC-CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8638-01112457888766653125222103555422125664233112
Q gi|254780240|r 82 ILDG-YPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 82 ilDG-FPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
|||| |+++.++. +. ..|.||+|+.|...++-|+..|..
T Consensus 63 IidGny~~~~~~r------~~----~aD~iI~Ld~p~~~~~~r~~kR~~ 101 (167)
T PRK08118 63 IIDGNYGGTMDIR------LN----AADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEECCCHHHHHHH------HH----HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 9947717799877------97----699999985989999999999999
No 28
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.38 E-value=2.2e-11 Score=92.07 Aligned_cols=165 Identities=16% Similarity=0.266 Sum_probs=93.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 969998788999678999999971894895789999999600145666677641-3445541035665554202322253
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
++|+++|+|||||||+|+.||++++++++.+..++.+.. |.-+.+.++ .|+--=-++-..++.+-... .
T Consensus 5 ~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~~Ie~~~------g~si~~if~~~Ge~~FR~~E~~~l~~l~~~----~ 74 (175)
T PRK00131 5 PNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDHLIEARA------GKSIPEIFEEEGEAGFRELEEEVLAELLQR----H 74 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH------CCCHHHHHHHHCHHHHHHHHHHHHHHHCCC----C
T ss_conf 808988899999899999999995969023988999761------699999999858899999999999965147----9
Q ss_pred EEEE---CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1786---3801112457888766653125222103555422125664233112323334556567898999999999999
Q gi|254780240|r 80 GFIL---DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRK 156 (201)
Q Consensus 80 g~il---DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~ 156 (201)
+.|| -|.|-+.+..+. +.. ...+|+|+++.+++.+|+.++...|. ....|..+.+++ ..+
T Consensus 75 ~~VIstGGG~v~~~~~~~~----L~~----~g~vV~L~~~~e~l~~Rl~~~~~RPl-----l~~~~~~~~l~~----l~~ 137 (175)
T PRK00131 75 NLVISTGGGAVLREENRAL----LRE----RGTVVYLDASFEELLRRLARDRNRPL-----LQTEDPKEKLRA----LYE 137 (175)
T ss_pred CEEEECCCCCCCCHHHHHH----HHC----CCCEEEEECCHHHHHHHHCCCCCCCC-----CCCCCHHHHHHH----HHH
T ss_conf 8599748982268899999----981----69379985799999998648999987-----889986999999----999
Q ss_pred HHHHHHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 75699999996797999938-99889999999999999998
Q gi|254780240|r 157 TILPLSSYYRDMGCLYIIDG-MLDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 157 ~~~pv~~~y~~~~~l~~Idg-~~~~~eV~~~I~~~l~~~~k 196 (201)
+- ..+|++.. -+.||+ +.++++|.++|.+.|+...+
T Consensus 138 ~R---~~~Y~~~A-d~~Idt~~~s~~ei~~~Ii~~L~~~~~ 174 (175)
T PRK00131 138 ER---DPLYEEVA-DLTIETDRRSPEEVVNEILELLELLLR 174 (175)
T ss_pred HH---HHHHHHHC-CEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99---99897538-999989999999999999999999852
No 29
>PRK06217 hypothetical protein; Validated
Probab=99.38 E-value=5.8e-12 Score=95.72 Aligned_cols=170 Identities=20% Similarity=0.251 Sum_probs=101.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|||+|+|.+||||+|.|+.|+++++++|+..-+++-.- ...++..+ -|.+.-..++...+... .+
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~W~p--~~~pf~~k----------R~~~eR~~ll~~~~~~~---~~ 66 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDDFFWLP--TDPPFTTK----------REPEERLRLLLEDLRDS---EG 66 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCEECC--CCCCCCCC----------CCHHHHHHHHHHHHHCC---CC
T ss_conf 67999789988789999999997598968645553568--99975643----------79999999999986379---99
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH---HH-
Q ss_conf 78638011124578887666531252221035554221256642331123233345565678989999999999---99-
Q gi|254780240|r 81 FILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENY---RK- 156 (201)
Q Consensus 81 ~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y---~~- 156 (201)
||++|=--.- ... .+ ...|+|++|++|.++.++|+..|-....+.+..-- .|..+.-.+-+++- ..
T Consensus 67 WV~sGs~~~w--gd~---l~----p~~DlvVfL~lP~~irl~Rlr~RE~~RyG~ri~pg-Gdm~~~~~~Fl~Wa~~YD~~ 136 (185)
T PRK06217 67 WILSGSLLGW--GDP---LE----PLFDLVVFLYIPPELRLERLRLREEQRYGNRILPG-GDMHKASLEFLEWAAQYDNA 136 (185)
T ss_pred EEEECCCCCC--CCC---CC----CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHCCCC
T ss_conf 8995775232--321---13----43568999828989999999999998607866899-41888889999999867889
Q ss_pred -----HHHHHHHHHHHCC-CEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----7569999999679-79999389988999999999999999
Q gi|254780240|r 157 -----TILPLSSYYRDMG-CLYIIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 157 -----~~~pv~~~y~~~~-~l~~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
+..--.+...... -++.+||+.++++-.+.|.+.+....
T Consensus 137 ~~~gRsl~~He~Wl~~~~cPVlrldg~~~~~~~~~~vl~~~~~~~ 181 (185)
T PRK06217 137 GPEGRSLAAHEQWLADQSCPVLRLDGDLTVEERLAQVLAALNSAP 181 (185)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 877644999999995289867997698989999999999974255
No 30
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.8e-11 Score=92.60 Aligned_cols=176 Identities=25% Similarity=0.265 Sum_probs=99.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC-CCHHHHHHHHHHH---
Q ss_conf 9699987889996789999999718---94895789999999600145666677641344-55-4103566555420---
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN---VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGS-LI-SDAIVNQVVCDRI--- 72 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~-lv-pd~ii~~li~~~l--- 72 (201)
|-|+|-|.-||||+||+..|++++. +..+- .|+ -.+|+.|..+++++.++. .+ |.....-+...+.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~----trE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~ 77 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVL----TRE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHL 77 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE----EEC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 299997888898899999999999982980799----868--99986999999997388667888999999999999999
Q ss_pred ----CCCCC-CCEEEECCCHHHHH--HH----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ----23222-53178638011124--57----------888766653125222103555422125664233112323334
Q gi|254780240|r 73 ----RLPDC-DSGFILDGYPRTVD--QA----------KSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASE 135 (201)
Q Consensus 73 ----~~~~~-~~g~ilDGFPRt~~--Qa----------~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~ 135 (201)
...-. ..-+|.|-|=-+-- |+ ..+.+... .+..||++++|++|.++..+|+.+|...
T Consensus 78 ~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~-~~~~PD~ti~Ldv~~e~al~R~~~r~~~----- 151 (208)
T COG0125 78 EEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAP-GGLKPDLTLYLDVPPEVALERIRKRGEL----- 151 (208)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCCCEEEEEECCHHHHHHHHHHCCCC-----
T ss_conf 9997887628999998783137888535305999899999997654-7899988999948889999999832776-----
Q ss_pred CCCCCCCCHHH-H-HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55656789899-9-9999999997569999999679799993899889999999999999998
Q gi|254780240|r 136 KSVRSDDKYDV-F-LKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 136 ~~~R~DD~~e~-i-~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k 196 (201)
..|-+ +++. + ++-.+.|.+ +.+.+ ...+.+|||++++++|.++|.+.|....+
T Consensus 152 -~~r~E-~~~~~f~~kvr~~Y~~----la~~~--~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 152 -RDRFE-KEDDEFLEKVREGYLE----LAAKF--PERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred -CCHHH-HHHHHHHHHHHHHHHH----HHHHC--CCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf -55156-6778999999999999----98618--77189998999979999999999998743
No 31
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.35 E-value=2.2e-11 Score=92.13 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=92.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 69998788999678999999971894895789999999600145666677641-34455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+|+++|.|||||||+++.||+++|++++.+-+++.+. .|.-+.++++ .|+--=-++-.+++. .+.. .+
T Consensus 4 ~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~~------~g~sI~eif~~~Ge~~FR~~E~~~l~-~l~~----~~ 72 (172)
T PRK03731 4 PLFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQST------LQMTVAEIVEREGWAGFRARESAALE-AVTA----PS 72 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHH-HHCC----CC
T ss_conf 8899889999889999999998599979786999988------39899999998398999999999999-8427----88
Q ss_pred EEEC---CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCHHHHHHHHHH
Q ss_conf 7863---80111245788876665312522210355542212566423311232333455656----7898999999999
Q gi|254780240|r 81 FILD---GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRS----DDKYDVFLKRIEN 153 (201)
Q Consensus 81 ~ilD---GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~----DD~~e~i~~Rl~~ 153 (201)
.||. |.|-+.+..+.| .. --.||+|++|.+++.+|+.... +...|+ .+..+. +..
T Consensus 73 ~VIstGGG~v~~~~n~~~L----~~----~g~vv~L~~~~~~l~~Rl~~~~------~~~~RPll~~~~~~~~----i~~ 134 (172)
T PRK03731 73 TVVATGGGIILTEENRAFM----RN----NGIVIYLCAPVSVLANRLEADP------EEDQRPTLTGKPLSEE----VAE 134 (172)
T ss_pred EEEEECCCCCCCHHHHHHH----HH----CCEEEEEECCHHHHHHHHHCCC------CCCCCCCCCCCCHHHH----HHH
T ss_conf 2898078642689999999----96----8999999799999999981387------7898987889987999----999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9997569999999679799993899889999999999999
Q gi|254780240|r 154 YRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 154 y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
..++- ..+|++.. .+.||+++++++|.++|.++|..
T Consensus 135 l~~~R---~~~Y~~~a-~~ii~~~~~~~~i~~~Il~~L~e 170 (172)
T PRK03731 135 VLAER---DALYREVA-HHIIDATQPPSQVVSEILSALAQ 170 (172)
T ss_pred HHHHH---HHHHHHHC-CEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999---99999848-99887989999999999998732
No 32
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.34 E-value=5.2e-11 Score=89.76 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=92.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 69998788999678999999971894895789999999600145666677641-34455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+|+++|.|||||||+++.||++++++++.+-+++.+. .|..+.+.+. .|+.-==++-.+++.+ + ....+
T Consensus 6 nI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~Ie~~------~g~si~~If~~~Ge~~FR~~E~~~l~~-l---~~~~~ 75 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR------TGADIGWVFDVEGEEGFRDREEKVINE-L---TEKQG 75 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHHHH-H---HCCCC
T ss_conf 2898899999889999999999699968780999999------798999999997499999999999998-8---54799
Q ss_pred EEE---CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 786---38011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 81 FIL---DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 81 ~il---DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
+|| -|.|-+.+..+. +.. -..||+|+++.+++.+|+......| ....+|..+. ++...++
T Consensus 76 ~VIstGGG~v~~~~~~~~----L~~----~g~vv~L~~~~~~~~~R~~~~~~RP-----ll~~~~~~~~----~~~l~~~ 138 (172)
T PRK05057 76 IVLATGGGSVKSRETRNR----LSA----RGVVVYLETTIEKQLARTQRDKKRP-----LLQVDDPREV----LEALANE 138 (172)
T ss_pred EEEECCCCCCCCHHHHHH----HHH----CCEEEEEECCHHHHHHHHCCCCCCC-----CCCCCCHHHH----HHHHHHH
T ss_conf 799789853588999999----996----6958999599899999805899999-----7989987999----9999999
Q ss_pred HHHHHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHHH
Q ss_conf 5699999996797999938-99889999999999999
Q gi|254780240|r 158 ILPLSSYYRDMGCLYIIDG-MLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 158 ~~pv~~~y~~~~~l~~Idg-~~~~~eV~~~I~~~l~~ 193 (201)
- ..+|++.. -+.||+ +.++++|.++|..+|++
T Consensus 139 R---~~~Y~~~A-d~~I~td~~~~~~i~~~Ii~~L~~ 171 (172)
T PRK05057 139 R---NPLYEEIA-DVTVRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred H---HHHHHHHC-CEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 9---99999869-999989999999999999999960
No 33
>PRK13946 shikimate kinase; Provisional
Probab=99.31 E-value=1.4e-10 Score=87.00 Aligned_cols=165 Identities=13% Similarity=0.221 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 699987889996789999999718948957899999996001456666776413-4455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMES-GSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~-G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+|+++|.|||||||+++.||++++++++.+-+++.+. .|.-+.++++. |+--==++-.+++.+-+... .
T Consensus 22 nIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~~IE~~------~g~sI~eIF~~~GE~~FR~~E~~~l~~l~~~~----~ 91 (195)
T PRK13946 22 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERA------ARMTIPEIFATYGEPEFRDLERRVIARLLKGG----P 91 (195)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCC----C
T ss_conf 5899899999889999999999797989885999998------09989999998697999998999999986489----8
Q ss_pred EEE---CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 786---38011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 81 FIL---DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 81 ~il---DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
.|| -|.|-+.+....+ .. -..+|+|+++.+++.+|+......|. ....|-.+. +....++
T Consensus 92 ~VIstGGG~v~~~~n~~~L----~~----~g~vI~L~~~~e~l~~Rl~~~~~RPL-----l~~~~~~~~----l~~l~~~ 154 (195)
T PRK13946 92 LVLATGGGAFMNEETRAAI----RE----KGISVWLKADLDVLWERVSRRDTRPL-----LRTADPKET----LARLMEE 154 (195)
T ss_pred EEEECCCCCCCCHHHHHHH----HH----CCEEEEEECCHHHHHHHHCCCCCCCC-----CCCCCHHHH----HHHHHHH
T ss_conf 7997587423689999999----95----79689984999999999728999998-----999887999----9999999
Q ss_pred HHHHHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5699999996797999938-9988999999999999999876
Q gi|254780240|r 158 ILPLSSYYRDMGCLYIIDG-MLDMDEVSRSIDSLLVSVRKKC 198 (201)
Q Consensus 158 ~~pv~~~y~~~~~l~~Idg-~~~~~eV~~~I~~~l~~~~k~~ 198 (201)
- ..+|++.. +.||. +.++++|.++|..+|....+..
T Consensus 155 R---~~lY~~Ad--~~I~t~~~s~~~ia~eIi~~L~~~~~~~ 191 (195)
T PRK13946 155 R---YPVYAQAD--LTVESRDVPHEVIADEVIEALAAYLEVE 191 (195)
T ss_pred H---HHHHHHCC--EEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9---99999789--8988998999999999999999998566
No 34
>PRK00625 shikimate kinase; Provisional
Probab=99.31 E-value=1e-11 Score=94.22 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=89.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 969998788999678999999971894895789999999600145666677641-3445541035665554202322253
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
|||+++|.|||||+|+++.||+++|++.+.+-+++-+... ...+.-+++..+ .|+.-==++-.+++. .+. ..+
T Consensus 1 MnI~LIG~mGsGKStiGk~LA~~l~~~FvD~D~~Ie~~~~--~~i~~Si~eIf~~~GE~~FR~~E~~~l~-~l~---~~~ 74 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH--GALYSSPKEIYQAYGEEGFCEEEALALE-SLP---VIP 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHC--CCCCCCHHHHHHHHCHHHHHHHHHHHHH-HHC---CCC
T ss_conf 9299989999988999999999939995774999999868--6523569999997189999999999999-732---489
Q ss_pred EEEE--CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1786--38011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 80 GFIL--DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 80 g~il--DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
++|= =|.|-+.+..+.+ .+ -..||+|++|.+++.+|+.+|...+.. ...+.-.+...+|...|++.
T Consensus 75 ~VIstGGG~v~~~~n~~~L----k~----~g~vV~L~~~~e~i~~Rl~~rpl~~~~----~~~~~l~~l~~eR~~lY~~~ 142 (173)
T PRK00625 75 SIVALGGGTLMHEESYDHI----RN----RGLLVLLSLPIATIYQRLQKRGLPERL----KKTPSLEEILTQRIDRMREI 142 (173)
T ss_pred CEEECCCCCCCCHHHHHHH----HH----CCEEEEEECCHHHHHHHHHCCCCCCCC----CCHHHHHHHHHHHHHHHHHH
T ss_conf 6897488501789999999----96----899999839999999998269987778----83579999999999999997
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5699999996797999938998899999999999
Q gi|254780240|r 158 ILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 (201)
Q Consensus 158 ~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l 191 (201)
..-+++ .....+.-.+++.++++.++..|
T Consensus 143 AD~iI~-----~d~~sit~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 143 ADYIFS-----LDHVALTSESSLMSACQSFCTLL 171 (173)
T ss_pred CCEEEE-----CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999996-----89976132544999999999997
No 35
>PRK07261 topology modulation protein; Provisional
Probab=99.31 E-value=4.7e-12 Score=96.31 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=73.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 96999878899967899999997189489578999999960014566667764134455410356655542023222531
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
|||+|+|+|||||||.|+.|++++|++++....+.-. ......|++.....+.+.+.+. .
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~----------------p~w~~~~~~e~~~~~~~~~~~~----~ 60 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFS----------------SNWQERDDDDMIADISNFLLKQ----D 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEC----------------CCCEECCHHHHHHHHHHHHHCC----C
T ss_conf 9899988999868999999999879797970227888----------------9998888999999999998489----8
Q ss_pred EEECCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 786380-1112457888766653125222103555422125664233112
Q gi|254780240|r 81 FILDGY-PRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 81 ~ilDGF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
|||||- .++..+ .-+. ..|.||+||.|...++-|+..|..
T Consensus 61 WIiDGny~~~~~~-----~rl~----~aD~iI~Ld~p~~~~l~rvikR~l 101 (171)
T PRK07261 61 WIIEGNYSNCLYE-----ERMA----EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred EEEECCCCCHHHH-----HHHH----HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 7994785124777-----6797----799999985849999999999999
No 36
>PRK13947 shikimate kinase; Provisional
Probab=99.30 E-value=1.6e-10 Score=86.72 Aligned_cols=162 Identities=19% Similarity=0.281 Sum_probs=94.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 69998788999678999999971894895789999999600145666677641-34455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+|+++|.|||||||+++.||++++++.+.+-+++.+. .|.-+.+.+. .|+--==++-..++.+ +. ...+
T Consensus 3 nI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie~~------~g~sI~eIf~~~GE~~FR~~E~~~l~~-~~---~~~~ 72 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIEKM------AGMTVSEIFEKDGEVRFRSLEKAAVRK-AA---RLKN 72 (171)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH------CCCCHHHHHHHHCHHHHHHHHHHHHHH-HC---CCCC
T ss_conf 5899799999889999999999796989874999988------299889999984899999999999997-40---3689
Q ss_pred EEEC---CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7863---8011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 81 FILD---GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 81 ~ilD---GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
.|+. |.|-+.+....| .. -..||+|+++.+.+.+|+......|.- ...|.. .++....++
T Consensus 73 ~VistGGG~v~~~~n~~~l----~~----~g~vi~L~~~~~~l~~Rl~~~~~RPll-----~~~~~~----~~l~~l~~~ 135 (171)
T PRK13947 73 LVIATGGGVVLNPENIVQL----RK----NGVLICLVARPEVILRRIKKKKDRPLL-----MVGNPE----ERIRELLKE 135 (171)
T ss_pred EEEECCCCCCCCHHHHHHH----HH----CCEEEEECCCHHHHHHHHHCCCCCCCC-----CCCCHH----HHHHHHHHH
T ss_conf 7997898500699999999----96----898999739999999997289999979-----899879----999999999
Q ss_pred HHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 56999999967979999389-988999999999999999
Q gi|254780240|r 158 ILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 158 ~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~~ 195 (201)
-.| +|+.. -+.||.+ .++++|.+.|...+..++
T Consensus 136 R~~---~Y~~A--d~~I~~~~~s~~ei~~~Ii~~~~k~k 169 (171)
T PRK13947 136 REP---FYRFA--DFTIDTSDMTIDEVAEEIIKAYIKLK 169 (171)
T ss_pred HHH---HHHHC--CEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 999---99976--98988998999999999999999720
No 37
>PRK13976 thymidylate kinase; Provisional
Probab=99.27 E-value=3.4e-10 Score=84.66 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=91.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC----C-CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHH-----------
Q ss_conf 9699987889996789999999718----9-489578999999960014566667764134455-4103-----------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN----V-PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLI-SDAI----------- 63 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~----~-~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lv-pd~i----------- 63 (201)
|-|+|-|.-||||+||+++|++.+. . ..+. .|+ -.+|++|..+++++.+..-+ |...
T Consensus 1 mfIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~----trE--Pggt~~ge~IR~~ll~~~~~~~~te~lLf~A~R~eh 74 (202)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVL----TRE--PGGTSFNESVRGLLLSTKNLDKLSELLLFIAMRREH 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE----ECC--CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98999899999899999999999986069986898----379--999827899999971655799699999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEEC----------CCHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 566555420232225317863----------8011124--5788876665312522210355542212566423311232
Q gi|254780240|r 64 VNQVVCDRIRLPDCDSGFILD----------GYPRTVD--QAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEA 131 (201)
Q Consensus 64 i~~li~~~l~~~~~~~g~ilD----------GFPRt~~--Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~ 131 (201)
+.+++...+.+ .+-+|.| ||.|... ....+++.+. +..||++|+|++|.++..+|...++.+
T Consensus 75 ~~~~I~PaL~~---g~~VI~DRy~~St~AYQg~~~gl~~~~i~~l~~~~~--~~~PDlt~~Ldi~~e~al~R~~~~~~e- 148 (202)
T PRK13976 75 FVKVILPALTQ---GKIVICDRFIDSTIAYQGYGCGIDLKLIRDLNDLVV--DIYPDITFILDIDINQSLSRADKNGYE- 148 (202)
T ss_pred HHHHHHHHHHC---CCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHC--CCCCCEEEEEECCHHHHHHCCCCCCHH-
T ss_conf 99998888866---998997485355788732267989999999999840--789887999837889997521468621-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHC-CCEE---EECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 333455656789899999999999975-6999999967-9799---99389988999999999999999
Q gi|254780240|r 132 IASEKSVRSDDKYDVFLKRIENYRKTI-LPLSSYYRDM-GCLY---IIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 132 ~~~~~~~R~DD~~e~i~~Rl~~y~~~~-~pv~~~y~~~-~~l~---~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
-.. ++ |++.. ..-++..++. ..++ .+|+++++++|.+.+.++|.-++
T Consensus 149 ----------~~~------~~-f~~kVr~~Yl~la~~~~~r~~~I~~ida~~~i~~I~~~~~~ii~~~~ 200 (202)
T PRK13976 149 ----------FMD------LE-FYARVRKGFQDIAKKNPHRCHLITCIDATDNINDINSVHLKIIKVLQ 200 (202)
T ss_pred ----------HCC------HH-HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----------205------99-99999999999998599878999703576798999999999999986
No 38
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.27 E-value=7.6e-11 Score=88.72 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=103.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCCC-CCC
Q ss_conf 99987889996789999999718948957899999996001456666776413445541035665---55420232-225
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQV---VCDRIRLP-DCD 78 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~l---i~~~l~~~-~~~ 78 (201)
|++||+.||||+|+++.||+++|++++..-|+ ....-.+-|.+|....|+--... +.+.+... ...
T Consensus 6 ~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd~----------Hp~~Ni~KM~~GiPL~D~DR~pWL~~l~~~~~~~~~~~ 75 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFSAKFIDGDDL----------HPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKN 75 (176)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEECCCCC----------CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99982898998999999999959877623443----------78989999868999886679999999999999999649
Q ss_pred CEEEE--CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 31786--3801112457888766653125222103555422125664233112323334556567898999999999999
Q gi|254780240|r 79 SGFIL--DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRK 156 (201)
Q Consensus 79 ~g~il--DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~ 156 (201)
.+.|+ ...-|.+.+ .+... .+.-.+++|+++.+++.+|+..|.-+= . .++.+.-.|+.
T Consensus 76 ~~~VvaCSALK~~YRd------~Lr~~-~~~v~fv~L~g~~~~i~~Rl~~R~gHF------M----p~~LL~SQf~t--- 135 (176)
T PRK09825 76 ETGFIVCSSLKKQYRD------ILRKS-SPNVHFLWLDGDYETILARMQRRAGHF------M----PPDLLQSQFDA--- 135 (176)
T ss_pred CCEEEEEHHHHHHHHH------HHHCC-CCCEEEEEEECCHHHHHHHHHHCCCCC------C----CHHHHHHHHHH---
T ss_conf 9829971886799999------99747-998799997189999999997460379------9----97999989998---
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 756999999967979999389988999999999999999876339
Q gi|254780240|r 157 TILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKKCSSS 201 (201)
Q Consensus 157 ~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~~~~~ 201 (201)
-..|.. +-..+..||.++++++|.+++...|..++|.+++|
T Consensus 136 LE~P~~----dE~~v~~idi~~~~e~iv~~~~~al~a~~~a~~~~ 176 (176)
T PRK09825 136 LERPCA----DEHDIARIDVNHDIENVTEQCRQAVQAFRQALSAS 176 (176)
T ss_pred HCCCCC----CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 179998----88986999789999999999999999999875159
No 39
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=99.27 E-value=5e-11 Score=89.84 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=91.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC----CEECHHHHHHHHHHHHHHHHHHHHHH----HHCCCC-CCC----------
Q ss_conf 96999878899967899999997189----48957899999996001456666776----413445-541----------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNV----PQLSTGDMLRAEVDRNTLLGKQVKGS----MESGSL-ISD---------- 61 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~----~~is~gdllR~~~~~~s~~g~~i~~~----l~~G~l-vpd---------- 61 (201)
|-|+|=|.-|||||||+..|++.+.= ..+- .|| -.+|.+|..|+++ +..+.- +.+
T Consensus 3 ~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~----t~E--Pg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAd 76 (211)
T TIGR00041 3 MFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLF----TRE--PGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAAD 76 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE----EEC--CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 4588851158758999999999977513834788----718--9998789999999998741466633599999999985
Q ss_pred -----HHHHHHHHHHHCCCCCCCEEEEC----------CCHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHH
Q ss_conf -----03566555420232225317863----------8011124578887666531---25222103555422125664
Q gi|254780240|r 62 -----AIVNQVVCDRIRLPDCDSGFILD----------GYPRTVDQAKSLHAFISNM---DCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 62 -----~ii~~li~~~l~~~~~~~g~ilD----------GFPRt~~Qa~~l~~~l~~~---~~~~~~vi~L~~~~~~~~~R 123 (201)
+.+..+++..+.+.. -+|-| |+-|.... .|...++.. +..||+||+|+|+.++..+|
T Consensus 77 R~~HL~~~~~~ik~al~~~~---~Vi~DRy~~Ss~AYQg~~~~~d~--~~~~~lN~~~~~~~~Pd~t~~Ld~d~e~al~R 151 (211)
T TIGR00041 77 RHDHLEHVEEKIKPALAQGK---LVISDRYLFSSIAYQGLARGIDI--DLVLELNEDALGDMKPDLTILLDIDPEVALER 151 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHCCCCCH--HHHHHHHHHHCCCCCCCEEEEEEECHHHHHHH
T ss_conf 89999978987788986696---79984112435777542256888--89999977521135866689886073779887
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCEEEECCCCC-HHHHHHHH
Q ss_conf 23311232333455656789899999999999975699999996--797999938998-89999999
Q gi|254780240|r 124 IQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRD--MGCLYIIDGMLD-MDEVSRSI 187 (201)
Q Consensus 124 ~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~--~~~l~~Idg~~~-~~eV~~~I 187 (201)
+.+|..+....+...-.-|..+.++.+|. .+.+.|.. ...++.|||+++ +++|.+.|
T Consensus 152 ~~~~g~~~~~~~~~~e~~d~~~~v~~~Yl-------~L~~~~~rkGD~~~~~~Da~~~~~~~v~~~I 211 (211)
T TIGR00041 152 LRKRGEDELLDREEFEKLDFFEKVRERYL-------ELADKFERKGDKKIVVIDATNSGVEEVEQDI 211 (211)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCCCCCCEEEEEECCCCCHHHHHHHC
T ss_conf 52047234665554211899999999999-------9999841468863799866774478898609
No 40
>KOG3347 consensus
Probab=99.26 E-value=5.9e-11 Score=89.42 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=101.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 969998788999678999999971894895789999999-6001456666776413445541035665554202322253
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV-DRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~-~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
+||++.|-||+||+|.|.+||+++|+.||.+||+.++.- -.+- ...-+ -.++.++-+...+...|.+ .
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gy--DE~y~-----c~i~DEdkv~D~Le~~m~~----G 76 (176)
T KOG3347 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGY--DEEYK-----CHILDEDKVLDELEPLMIE----G 76 (176)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHCCHHCC--CCCCC-----CCCCCHHHHHHHHHHHHHC----C
T ss_conf 88798679998802599999997398567455677661102102--32236-----7545678999888898756----8
Q ss_pred EEEEC-----CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH--HH
Q ss_conf 17863-----801112457888766653125222103555422125664233112323334556567898999999--99
Q gi|254780240|r 80 GFILD-----GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKR--IE 152 (201)
Q Consensus 80 g~ilD-----GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~R--l~ 152 (201)
|.|+| =||- .-.|+|++|.||-+++-+|+..|..+. ..++.. -+
T Consensus 77 g~IVDyHgCd~Fpe----------------rwfdlVvVLr~~~s~LY~RL~sRgY~e-------------~Ki~eNiecE 127 (176)
T KOG3347 77 GNIVDYHGCDFFPE----------------RWFDLVVVLRTPNSVLYDRLKSRGYSE-------------KKIKENIECE 127 (176)
T ss_pred CCEEEECCCCCCCH----------------HHEEEEEEEECCCHHHHHHHHHCCCCH-------------HHHHHHCCHH
T ss_conf 84886005676501----------------135579999468459999999758888-------------8876510158
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCHHHH---HHHHHHHHHHHHHH
Q ss_conf 9999756999999967979999389988999---99999999999987
Q gi|254780240|r 153 NYRKTILPLSSYYRDMGCLYIIDGMLDMDEV---SRSIDSLLVSVRKK 197 (201)
Q Consensus 153 ~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV---~~~I~~~l~~~~k~ 197 (201)
+|..-.....+.|+.. .+++..++.. ++. ..+|..++..-++.
T Consensus 128 Ifgv~~eea~eSy~~~-iV~eL~s~~~-Eem~~ni~ri~~w~~~w~~~ 173 (176)
T KOG3347 128 IFGVVLEEARESYSPK-IVVELQSETK-EEMESNISRILNWTRMWKKP 173 (176)
T ss_pred HHHHHHHHHHHHCCCC-CEEECCCCCH-HHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999871874-2133476778-99999899999999987511
No 41
>PRK13948 shikimate kinase; Provisional
Probab=99.25 E-value=5e-10 Score=83.60 Aligned_cols=162 Identities=16% Similarity=0.227 Sum_probs=93.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 69998788999678999999971894895789999999600145666677641-34455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+|+++|.|||||||+++.||++++++++.+-+++.+ ..|..|.+.++ .|+.-==++-.+++.+-+... .
T Consensus 12 ~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie~------~~g~sI~eIF~~~GE~~FR~~E~~~l~~l~~~~----~ 81 (182)
T PRK13948 12 FVALAGFMGTGKSRIGWELSRALALHFVDTDKLITR------VVGKSIPEVFAQEGEEYFRACEKEVVRRVTRLD----Y 81 (182)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCC----C
T ss_conf 189889999988999999999969598888499999------889399999998489999999999999997479----9
Q ss_pred EEE---CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 786---38011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 81 FIL---DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 81 ~il---DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
.|| =|.|-+.+..+.+ .. -..||+|+++.+++.+|+... .+......|..+.+ ....++
T Consensus 82 ~VIStGGG~v~~~~n~~~l----~~----~g~vv~L~~~~~~i~~R~~~~------~RPll~~~~~~~~l----~~l~~e 143 (182)
T PRK13948 82 AVISLGGGTFIHEENRRAL----LG----RGPVVVLWASPETVYQRTKHS------DRPLLQVEDPLERI----RTLMEE 143 (182)
T ss_pred EEEECCCCEECCHHHHHHH----HH----CCEEEEEECCHHHHHHHCCCC------CCCCCCCCCHHHHH----HHHHHH
T ss_conf 6997588500589999999----96----898999969999999881789------99988899879999----999999
Q ss_pred HHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 56999999967979999389-9889999999999999998
Q gi|254780240|r 158 ILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 158 ~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~~k 196 (201)
- ..+|++.. + .|+.+ .++++|.++|...|.+-.+
T Consensus 144 R---~~~Y~~A~-~-~I~td~~~~~eiv~~Ii~~L~a~~~ 178 (182)
T PRK13948 144 R---EPVYRQGT-I-HVHSDGRPVEEIVEEVVERLWAWAE 178 (182)
T ss_pred H---HHHHHHCC-E-EEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9---99999678-8-9889989999999999999999986
No 42
>PRK13949 shikimate kinase; Provisional
Probab=99.24 E-value=5.9e-10 Score=83.13 Aligned_cols=162 Identities=16% Similarity=0.268 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 69998788999678999999971894895789999999600145666677641-34455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
||+++|.|||||||+++.||++++++++.+-.++-+ ..|.-+.+++. .|+--==++-.+++.+ +.. ..+
T Consensus 3 ~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie~------~~g~sI~eif~~~Ge~~FR~~E~~~l~~-l~~---~~~ 72 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIEN------RFHKTVGDIFAERGEAVFRELERNMLHE-VAE---FED 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHH------HHCCCHHHHHHHHCHHHHHHHHHHHHHH-HHC---CCC
T ss_conf 389979999988999999999959997978499999------8599999999986989999999999999-845---898
Q ss_pred EEEC---CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7863---8011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 81 FILD---GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 81 ~ilD---GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
.||. |-|-+.+..+. +... -.||+|+++.+++.+|+...... +.... +.+.+.+...+....+.
T Consensus 73 ~VistGGG~v~~~~n~~~----l~~~----g~vV~L~~~~~~l~~Rl~~~~~~----RPll~-~~~~~e~~~~i~~~~~~ 139 (169)
T PRK13949 73 VVISTGGGAPCFFDNMEL----MNAS----GTTVYLKVSPEVLFVRLRLAKQQ----RPLLK-GKSDEELLDFIIEALEK 139 (169)
T ss_pred EEEECCCCCCCCHHHHHH----HHHC----CEEEEEECCHHHHHHHHHCCCCC----CCCCC-CCCHHHHHHHHHHHHHH
T ss_conf 399748631157999999----9968----95799989999999997568999----99878-98989999999999999
Q ss_pred HHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHH
Q ss_conf 56999999967979999389-98899999999999
Q gi|254780240|r 158 ILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLL 191 (201)
Q Consensus 158 ~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l 191 (201)
- ..+|++.. +.||++ .++++|.++|.+.|
T Consensus 140 R---~~~Y~~A~--~~I~td~~s~~~i~~~Ii~~L 169 (169)
T PRK13949 140 R---APFYRQAK--IIFNADKLEDESQIEQLVQRL 169 (169)
T ss_pred H---HHHHHHCC--EEEECCCCCHHHHHHHHHHHC
T ss_conf 9---99999799--899899999999999999729
No 43
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.18 E-value=5e-11 Score=89.89 Aligned_cols=169 Identities=26% Similarity=0.319 Sum_probs=92.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH----HHHHHH------HHHH----------HHHHHCCCCCCC
Q ss_conf 69998788999678999999971894895789999999----600145------6666----------776413445541
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV----DRNTLL------GKQV----------KGSMESGSLISD 61 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~----~~~s~~------g~~i----------~~~l~~G~lvpd 61 (201)
.|-|-||.||||||+|+.||+++||+|+++|.+.|... +.+.++ -..+ ...+-+|+.|++
T Consensus 6 ~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs~ 85 (222)
T COG0283 6 IIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVSE 85 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEECCCCEEEECCCCCHH
T ss_conf 99976887568478999999980986664549999999999980899755999999998588110467158877820036
Q ss_pred HHHH-------------HHHHHHH----CCCCCC-CEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0356-------------6555420----232225-317863801112457888766653125222103555422125664
Q gi|254780240|r 62 AIVN-------------QVVCDRI----RLPDCD-SGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 62 ~ii~-------------~li~~~l----~~~~~~-~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
++-. .-+.+.+ +..-+. .|+|+|| |.+--.. + ++ -++-|+|+.+.++--+|
T Consensus 86 ~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dG--RDiGTvV-----~--Pd--A~lKiFLtAS~e~RA~R 154 (222)
T COG0283 86 EIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADG--RDIGTVV-----F--PD--AELKIFLTASPEERAER 154 (222)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEC--CCCCCEE-----C--CC--CCEEEEEECCHHHHHHH
T ss_conf 651689999999997259999999999999984389889866--8766567-----7--89--87578986888999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHH--HHHH---HHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHH
Q ss_conf 23311232333455656789899999999--9999---756999999967979999389-988999999999999
Q gi|254780240|r 124 IQVRVLEAIASEKSVRSDDKYDVFLKRIE--NYRK---TILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLV 192 (201)
Q Consensus 124 ~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~--~y~~---~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~ 192 (201)
-........ -.++ .|.+.+.+. .++. ...|+ +...-.+.||.+ .+++||++.|..++.
T Consensus 155 R~~q~~~~g------~~~~-~e~ll~eI~~RD~~D~~R~~~PL----k~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 155 RYKQLQAKG------FSEV-FEELLAEIKERDERDSNRAVAPL----KPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHHHHCC------CCCH-HHHHHHHHHHHHHCCCCCCCCCC----CCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999877446------7203-99999999986230113767888----6789748997898829999999999999
No 44
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.17 E-value=4.6e-10 Score=83.82 Aligned_cols=169 Identities=20% Similarity=0.183 Sum_probs=105.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH------CCCCCC----------------
Q ss_conf 9998788999678999999971894895789999999600145666677641------344554----------------
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME------SGSLIS---------------- 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~------~G~lvp---------------- 60 (201)
|-+.|.|||||||.|+.+++ +|++.+++++..|+-.+++++....+.+..- +|.+.-
T Consensus 5 IglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~ 83 (201)
T COG0237 5 IGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARLK 83 (201)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 99957887788999999997-79939988699999884563578999998499765665105899999997389999999
Q ss_pred -CHHHHHHHHHHHC-CCCC-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -1035665554202-3222-531786380111245788876665312522210355542212566423311232333455
Q gi|254780240|r 61 -DAIVNQVVCDRIR-LPDC-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKS 137 (201)
Q Consensus 61 -d~ii~~li~~~l~-~~~~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~ 137 (201)
+.++.+++...+. .... ..+|++-- +..|.+.... ..++.|++++||.++-++|+..|.
T Consensus 84 Le~i~hPli~~~~~~~~~~~~~~~~~~e-------iplL~e~~~~--~~~d~Vi~V~a~~e~r~eRl~~R~--------- 145 (201)
T COG0237 84 LEKILHPLIRAEIKVVIDGARSPYVVLE-------IPLLFEAGGE--KYFDKVIVVYAPPEIRLERLMKRD--------- 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEE-------EHHHHHHCCC--CCCCEEEEEECCHHHHHHHHHHCC---------
T ss_conf 9966558999999999997416763887-------0788872666--668889999899999999998337---------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65678989999999999997569999999679799993899889999999999999998763
Q gi|254780240|r 138 VRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKKCS 199 (201)
Q Consensus 138 ~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~~~ 199 (201)
.++.|....|+..-....+- +.-. =..++.+.++++..+++...+..+.....
T Consensus 146 ---~~~~e~~~~~~~~Q~~~~ek----~~~a--d~vi~n~~~i~~l~~~i~~~~~~~~~~~~ 198 (201)
T COG0237 146 ---GLDEEDAEARLASQRDLEEK----LALA--DVVIDNDGSIENLLEQIEKLLKELLGLVL 198 (201)
T ss_pred ---CCCHHHHHHHHHHCCCHHHH----HHHC--CCHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ---99999999999873899998----6314--64766487799999999999999987643
No 45
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.15 E-value=1.4e-09 Score=80.82 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=104.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCC---------------
Q ss_conf 6999878899967899999997189489578999999960014566667764------1344554---------------
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSM------ESGSLIS--------------- 60 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l------~~G~lvp--------------- 60 (201)
.|-+.|+.||||||.|..+. .+|++++++..+.++-.+.+.+....+.+.. +.|.+=.
T Consensus 4 ~IgiTG~igsGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vF~d~~~~~ 82 (199)
T PRK00081 4 IIGLTGGIGSGKSTVANIFA-ELGVPVIDADKIAHQVLEPGGPALEAIVEHFGSEILLADGELDRRKLRERVFSNPEERK 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHH
T ss_conf 99957888777999999999-88993996379999999707599999999853631377787569999999867989999
Q ss_pred --CHHHHHHHHHHHCC----CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf --10356655542023----222531786380111245788876665312522210355542212566423311232333
Q gi|254780240|r 61 --DAIVNQVVCDRIRL----PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS 134 (201)
Q Consensus 61 --d~ii~~li~~~l~~----~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~ 134 (201)
.+++.+.+...+.. ......+++.--|- .|+. +.....|.||+++||+++..+|+..|..-
T Consensus 83 ~Le~iiHP~V~~~i~~~~~~~~~~~~~iv~e~pL------L~E~---~~~~~~d~vi~V~a~~~~r~~Rl~~R~~~---- 149 (199)
T PRK00081 83 WLEAILHPLIREEIQEQLQQAESPEKYVVLDIPL------LFEN---GLYKWFDRVLVVDVPPEIQLERLMARDGL---- 149 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHH------HHHC---CCHHCCCEEEEEECCHHHHHHHHHHCCCC----
T ss_conf 9999877999999999999864699789994316------7653---60120785799986999999999974899----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 455656789899999999999975699999996797999938998899999999999999987
Q gi|254780240|r 135 EKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKK 197 (201)
Q Consensus 135 ~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~ 197 (201)
+.+.+.+|+.... |..+.-+.. =..|+.+.+.++...+|..++..+.+-
T Consensus 150 --------~~~~~~~r~~~Q~----~~~~k~~~a--D~vI~N~~s~e~l~~qi~~il~~i~~~ 198 (199)
T PRK00081 150 --------SEEEAEAILASQM----SREEKLARA--DDVIDNNGDLEDLRKQVERLLAELLKL 198 (199)
T ss_pred --------CHHHHHHHHHHCC----CHHHHHHHC--CEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf --------8999999999589----989999969--999989999999999999999999961
No 46
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.15 E-value=1.1e-10 Score=87.78 Aligned_cols=174 Identities=25% Similarity=0.314 Sum_probs=88.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH----HHHHHHH--HHHHHHHH-----------------CCCCC
Q ss_conf 9998788999678999999971894895789999999----6001456--66677641-----------------34455
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV----DRNTLLG--KQVKGSME-----------------SGSLI 59 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~----~~~s~~g--~~i~~~l~-----------------~G~lv 59 (201)
|-|=||.||||||+|+.||+++|+.|+++|.+.|... +++-+.. ..+...+. +|+-|
T Consensus 7 IaIDGpagSGKST~ak~lA~~L~~~yldTG~~YRa~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~l~~~dv 86 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALQHGVDLEDEEALVALAAHLDISFENGPDGQEVFLNGEDV 86 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
T ss_conf 99658986787899999999939887641099999999999848596579999999854982003688763798679512
Q ss_pred CCHHH-------------HHHHHHHH----CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 41035-------------66555420----23222531786380111245788876665312522210355542212566
Q gi|254780240|r 60 SDAIV-------------NQVVCDRI----RLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFK 122 (201)
Q Consensus 60 pd~ii-------------~~li~~~l----~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~ 122 (201)
..++- ...+.+.+ +......|+|+|| |.+.-.. +. .-++-|+|+++.++.-+
T Consensus 87 ~~~lrs~eI~~~vS~iA~~~~VR~~l~~~Qr~~~~~~g~V~eG--RDIGTvV-----fP----dA~lK~fL~As~~~RA~ 155 (225)
T PRK00023 87 SDEIRTEEVGNAASKVAAIPEVREALVERQRAFAEAPGLVMDG--RDIGTVV-----FP----DAELKIFLTASAEERAE 155 (225)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEC--CCCCEEE-----EC----CCCEEEEEECCHHHHHH
T ss_conf 7988227888889886387889999999999998536916742--5431388-----06----88767778679899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHH
Q ss_conf 4233112323334556567898999999-999999756999999967979999389-98899999999999999
Q gi|254780240|r 123 RIQVRVLEAIASEKSVRSDDKYDVFLKR-IENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 123 R~~~R~~~~~~~~~~~R~DD~~e~i~~R-l~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~ 194 (201)
|-....... |.. .--++-.+.+.+| .........|+.. ..-.+.||.+ .++++|+..|...+...
T Consensus 156 RR~~el~~~--g~~-~~~~~v~~~i~~RD~~D~~R~~sPL~~----a~DAi~IDts~lti~evv~~i~~~i~~k 222 (225)
T PRK00023 156 RRYKELQAK--GIS-VNFEDLLAEIKERDERDSNRAVAPLKP----AEDALLLDTSGLSIEEVVEKILALIEQK 222 (225)
T ss_pred HHHHHHHHC--CCC-CCHHHHHHHHHHHCHHHCCCCCCCCCC----CCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 999999875--887-779999999986342023377678754----8981899898999999999999999998
No 47
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.14 E-value=6.4e-10 Score=82.91 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=94.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCC--
Q ss_conf 9699987889996789999999718948957899999996001456666776413-4455410356655542023222--
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMES-GSLISDAIVNQVVCDRIRLPDC-- 77 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~-G~lvpd~ii~~li~~~l~~~~~-- 77 (201)
|+|+++|+|||||||+++.||+.++++.+.+-.++.+. .|.-+.+..+. |+--=-.+-..++.+-+...++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~Vi 76 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVI 76 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 61899717999776899999998199802246999999------796999999998289999999999999862699599
Q ss_pred --CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CHHHHHHHHH
Q ss_conf --53178638011124578887666531252221035554221256642331123233345565678---9899999999
Q gi|254780240|r 78 --DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDD---KYDVFLKRIE 152 (201)
Q Consensus 78 --~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD---~~e~i~~Rl~ 152 (201)
..|.|++ .+.-.. +... -.||+|++|.+++.+|+.....-|.. +..|. -.+.+.+|..
T Consensus 77 aTGGG~v~~-----~enr~~----l~~~----g~vv~L~~~~e~l~~Rl~~~~~RPll----~~~~~~~~l~~L~~~R~~ 139 (172)
T COG0703 77 ATGGGAVLS-----EENRNL----LKKR----GIVVYLDAPFETLYERLQRDRKRPLL----QTEDPREELEELLEERQP 139 (172)
T ss_pred ECCCCCCCC-----HHHHHH----HHHC----CEEEEEECCHHHHHHHHCCCCCCCCC----CCCCHHHHHHHHHHHHHH
T ss_conf 779861168-----999999----9848----85899969999999982346679865----677768999999999899
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999756999999967979999389988999999999999999
Q gi|254780240|r 153 NYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 153 ~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
.|.+. -.+.++++...++|.++|...|....
T Consensus 140 ~Y~e~------------a~~~~~~~~~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 140 LYREV------------ADFIIDTDDRSEEVVEEILEALEGSL 170 (172)
T ss_pred HHHHH------------CCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99972------------74884489984899999999998732
No 48
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.14 E-value=2.2e-10 Score=85.79 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=92.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH----HHHHH--HHHHHHHHH------------------HCCCC
Q ss_conf 9998788999678999999971894895789999999----60014--566667764------------------13445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV----DRNTL--LGKQVKGSM------------------ESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~----~~~s~--~g~~i~~~l------------------~~G~l 58 (201)
|.|=||.||||||+|+.||+++|+.|+++|.+.|.-. +++-+ ....+...+ -+|+-
T Consensus 287 IAIDGPAgSGKSTvAK~lA~~L~~~yLDTGamYRAva~~~l~~~i~~~d~~~l~~~l~~~~i~~~~~~~~~~~i~lng~d 366 (512)
T PRK13477 287 IAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKLELKPSSGSPQRVWINGED 366 (512)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCEEEEECCEE
T ss_conf 99867875787899999999819968624499999999999759697689999999872987983188876289988857
Q ss_pred CCCHH----H---------HHHHHHHH----CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 54103----5---------66555420----2322253178638011124578887666531252221035554221256
Q gi|254780240|r 59 ISDAI----V---------NQVVCDRI----RLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121 (201)
Q Consensus 59 vpd~i----i---------~~li~~~l----~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~ 121 (201)
|.+++ + ...+.+.| ++.....|+|+|| |.+--.. +. .-++-|+|+++.++.-
T Consensus 367 vt~~IRs~eVs~~vS~vA~~p~VR~~l~~~QR~~a~~~g~V~eG--RDIGTVV-----fP----dA~lK~fLtAs~e~RA 435 (512)
T PRK13477 367 VTEAIRSPEVTSSVSAIAAQPCVRQALVKQQQRIGEKGGLVAEG--RDIGTHV-----FP----DAELKIFLTASVEERA 435 (512)
T ss_pred HHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC--CCCCCEE-----CC----CCCEEEEEECCHHHHH
T ss_conf 06655447889999998397989999999999984659999979--9876667-----78----9996699989999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHH
Q ss_conf 64233112323334556567898999999-999999756999999967979999389-98899999999999999
Q gi|254780240|r 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKR-IENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 122 ~R~~~R~~~~~~~~~~~R~DD~~e~i~~R-l~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~ 194 (201)
+|-...... .|....-.++-.+.+++| .........|+.. ..--+.||.+ -+++||++.|..++.+.
T Consensus 436 ~RR~~el~~--~g~~~~s~~~i~~~I~~RD~~D~~R~~sPL~~----A~DAi~IDTs~lsieeVv~kI~~l~~~k 504 (512)
T PRK13477 436 RRRALDLEA--QGFPVIDLEELEAQIAERDRLDSTREIAPLRK----ADDAIELITDGLSIEEVVDKIIDLYRDR 504 (512)
T ss_pred HHHHHHHHH--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 999999996--68887899999999998614314477688865----8984899899999999999999999975
No 49
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.13 E-value=1e-10 Score=87.86 Aligned_cols=169 Identities=19% Similarity=0.251 Sum_probs=89.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH----HHHHHH--HHHHHHHH-------------HCCCCCCCHH
Q ss_conf 9998788999678999999971894895789999999----600145--66667764-------------1344554103
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV----DRNTLL--GKQVKGSM-------------ESGSLISDAI 63 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~----~~~s~~--g~~i~~~l-------------~~G~lvpd~i 63 (201)
|-|-||.||||+|+|+.||+++||.|+++|.+.|... +++-++ -..+...+ -+|+.|.+++
T Consensus 445 IaIDGpagsGKsT~ak~lA~~l~~~yldTG~~YRa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dv~~~i 524 (662)
T PRK11860 445 ICIDGPTASGKGTLAAAVAQALGYHYLDSGALYRLTALAALRAGLSLDDEAAIAALARGLPVRFEGDRIWLGGEDVTDAI 524 (662)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCCEEEECCCCCHHHH
T ss_conf 99657875686899999999959967625399999999999719897679999999961984534766886584655765
Q ss_pred ----H---------HHHHHHHH----CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----5---------66555420----232225317863801112457888766653125222103555422125664233
Q gi|254780240|r 64 ----V---------NQVVCDRI----RLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQV 126 (201)
Q Consensus 64 ----i---------~~li~~~l----~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~ 126 (201)
+ ...+++.| +......|+|+|| |.+--.. +.+ -++-|+|+++.++.-+|-..
T Consensus 525 r~~~v~~~~S~ia~~~~VR~~l~~~Qr~~~~~~g~V~eG--RDigtvV-----fPd----A~~K~fl~As~~~RA~RR~~ 593 (662)
T PRK11860 525 RTEEAGMNASRVSALPAVRAALLALQHSFRRLPGLVADG--RDMGTVI-----FPD----AALKVFLTASAEARAERRYK 593 (662)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEC--CCCCCEE-----CCC----CCEEEEEECCHHHHHHHHHH
T ss_conf 067888999998596999999999999865468989989--9887768-----889----98559998999999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHH----HHHH-HHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHH
Q ss_conf 11232333455656789899----9999-999999756999999967979999389-9889999999999999
Q gi|254780240|r 127 RVLEAIASEKSVRSDDKYDV----FLKR-IENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVS 193 (201)
Q Consensus 127 R~~~~~~~~~~~R~DD~~e~----i~~R-l~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~ 193 (201)
..... |. +-+.+. +++| ...-.....|+. ...-.+.||.+ .+++||.+.|+.++..
T Consensus 594 ql~~~--g~-----~~~~~~v~~~i~~RD~~D~~R~~sPL~----~a~dAi~iDts~l~i~evv~~il~~~~~ 655 (662)
T PRK11860 594 QLISK--GI-----SANIASLRADLEARDARDANRSVAPLK----PAQDALLLDNSDLTIEEAVNQVLDWWQE 655 (662)
T ss_pred HHHHC--CC-----CCCHHHHHHHHHHHHHHHCCCCCCCCC----CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99976--99-----889999999999860422447768875----5898189979899999999999999995
No 50
>PRK04040 adenylate kinase; Provisional
Probab=99.09 E-value=1e-08 Score=75.43 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=90.5
Q ss_pred CE-EEEECCCCCCHHHHHHHHHHHH--CCCEECHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCHHHHH---HHHHHH
Q ss_conf 96-9998788999678999999971--8948957899999996001--45666677641344554103566---555420
Q gi|254780240|r 1 MR-IIFLGPPGSGKGTQACRLSQKL--NVPQLSTGDMLRAEVDRNT--LLGKQVKGSMESGSLISDAIVNQ---VVCDRI 72 (201)
Q Consensus 1 m~-I~i~G~PGsGK~T~a~~la~~~--~~~~is~gdllR~~~~~~s--~~g~~i~~~l~~G~lvpd~ii~~---li~~~l 72 (201)
|+ |++.|.||+||||++..+.++. ++.+++.|+++.+...+.- ..-.+++ +| |-+..-+ ...+++
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~vn~G~~M~e~A~~~glv~~RDemR------kL-~~~~q~~lQ~~Aa~~I 74 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR------KL-PLEEQKELQREAAERI 74 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHHHC------CC-CHHHHHHHHHHHHHHH
T ss_conf 4189997589887899999999972358759867799999999817734778874------79-9999999999999999
Q ss_pred CCCCCC--------------CEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 232225--------------317863801112457888766653125222103555422125664233112323334556
Q gi|254780240|r 73 RLPDCD--------------SGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSV 138 (201)
Q Consensus 73 ~~~~~~--------------~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~ 138 (201)
.+.... .|| +-|||...-+. +.|+.++.++.+.+.+..|-.+ |. .-.
T Consensus 75 ~~~~~~~~ViIDTHa~Iktp~Gy-lpGLP~~Vl~~-----------L~P~~ivlieA~P~eIl~RR~~---D~----tR~ 135 (189)
T PRK04040 75 AEMAGEGPVIVDTHATIKTPGGY-LPGLPEWVLEE-----------LNPDVIVLIEADPDEILMRRLR---DP----TRR 135 (189)
T ss_pred HHHCCCCCEEEECCCCCCCCCCC-CCCCCHHHHHH-----------CCCCEEEEEECCHHHHHHHHHC---CC----CCC
T ss_conf 98357872899445200268867-78998999986-----------6998899997588999998842---55----668
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 567898999999999999756999999967979999389988999999999999
Q gi|254780240|r 139 RSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 139 R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
|.-.+++.+++.... .....-.-..+........-|-+..+|+-.+++...|.
T Consensus 136 RD~es~~~I~~hq~~-nR~~a~ayavltga~Vkiv~N~e~~~e~Aa~~iv~~l~ 188 (189)
T PRK04040 136 RDVETEESIEEHQEM-NRAAAMAYAVLTGATVKIVENHEGLLEEAAEEIVEVLR 188 (189)
T ss_pred CCCCCHHHHHHHHHH-HHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 987889999999999-99999999997398489997899988999999999861
No 51
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.05 E-value=5.3e-09 Score=77.17 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=81.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99987889996789999999718948957--------8999999960014566667764134455410356655542023
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST--------GDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRL 74 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~--------gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~ 74 (201)
|+|-|.-||||||+++.|++++++..+.- ..+|....+.....+-..+-++-.- -.+...+.+..
T Consensus 2 I~iEG~iGsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~L~~fy~d~~~~~~~~Q~~~~~~-------r~~~~~~~~~~ 74 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLS-------RLKQYKDALEH 74 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHCCHHCCHHHHHHHHHH-------HHHHHHHHHHH
T ss_conf 89988888889999999999669948967888886876489999848043149999999999-------99999999865
Q ss_pred CCCCCEEEECCCHHHH--------HH----------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2225317863801112--------45----------78887666531252221035554221256642331123233345
Q gi|254780240|r 75 PDCDSGFILDGYPRTV--------DQ----------AKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEK 136 (201)
Q Consensus 75 ~~~~~g~ilDGFPRt~--------~Q----------a~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~ 136 (201)
....+++|+|.+|-+- .| -..+...+......||++|+|++|.+++.+|+..|..+...+
T Consensus 75 l~~~~~vI~dRs~~sd~~f~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~PDl~IyLd~~pe~~~~RI~~R~R~~E~~-- 152 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQG-- 152 (193)
T ss_pred HCCCCEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCHHHCC--
T ss_conf 033883999830335499999999825887689999999999987247899879999477899999999629754317--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 565678989999999999997569999999679799993899
Q gi|254780240|r 137 SVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGML 178 (201)
Q Consensus 137 ~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~ 178 (201)
. +.+ --+++..+++... +........+..||++.
T Consensus 153 -i----~~~-Yl~~l~~~y~~~~--~~~~~~~~pvl~iD~~~ 186 (193)
T cd01673 153 -I----PLD-YLEDLHEAYEKWF--LPQMYEKAPVLIIDANE 186 (193)
T ss_pred -C----CHH-HHHHHHHHHHHHH--HHHCCCCCCEEEEECCC
T ss_conf -9----999-9999999999999--87236899889998977
No 52
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.05 E-value=4.2e-10 Score=84.05 Aligned_cols=35 Identities=40% Similarity=0.609 Sum_probs=32.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHH
Q ss_conf 99987889996789999999718948957899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ 37 (201)
|.|-||.||||||+|+.||+++||.|+.+|.+.|.
T Consensus 37 IAIDGPAGSGKSTVAk~lA~~LG~~yLDTGAmYRa 71 (863)
T PRK12269 37 IALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71 (863)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHH
T ss_conf 99868986788999999999829958874889999
No 53
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.02 E-value=2.4e-09 Score=79.29 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=92.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHH----HHHHHHHHH----------HHHHH----------------
Q ss_conf 999878899967899999997189489578999999----960014566----------66776----------------
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE----VDRNTLLGK----------QVKGS---------------- 52 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~----~~~~s~~g~----------~i~~~---------------- 52 (201)
|-|=||.||||||+|+.||+++|+.|+.+|.+.|.. .+++-++.. .+.++
T Consensus 7 IAIDGPagsGKSTvak~lA~~Lg~~yLDTGamYRava~~~l~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (714)
T PRK09518 7 VAIDGPAGVGKSSVSRALAQYFGYAYLDTGAMYRACAWWCLKQGIDLDAETVDERSVTEAVGEFFSGDHFDISVDPDSPE 86 (714)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCE
T ss_conf 99778986589999999999949918870299999999999809896404567899998898762168636611788757
Q ss_pred -HHCCCCCCCHHH-------------HHHHHHHH-------CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf -413445541035-------------66555420-------232225317863801112457888766653125222103
Q gi|254780240|r 53 -MESGSLISDAIV-------------NQVVCDRI-------RLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVI 111 (201)
Q Consensus 53 -l~~G~lvpd~ii-------------~~li~~~l-------~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi 111 (201)
+-+|.-|.+++- ..-+.+.| ....+..|+|+|| |.+--.. .+ .-++-|
T Consensus 87 v~l~g~dVt~~IR~~eV~~~vS~VA~~p~VR~~L~~~QR~~~~~~~~~giV~eG--RDIGTVV-------fP--dA~~Ki 155 (714)
T PRK09518 87 VFADDEDISEEIRSPEVTSHVSAVANIIPVRNVLIAAQRALIAREASADIVAEG--RDITTVV-------AP--DAEVKI 155 (714)
T ss_pred EEECCEECHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEC--CCCCCEE-------CC--CCCEEE
T ss_conf 998998836755336889999988497999999999999999708998779866--8765367-------58--998579
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHH
Q ss_conf 555422125664233112323334556567898999999999999756999999967979999389-9889999999999
Q gi|254780240|r 112 ELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSL 190 (201)
Q Consensus 112 ~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~ 190 (201)
+|+++.++-.+|-...... . -.+...|.+.+| .+..+ -+..+.+...-...||.+ .+++||.+.|+.+
T Consensus 156 fLtAs~e~RA~RR~~q~~~----~---~~~~~~~~v~~R--D~~DS--r~~spl~~A~da~~iDss~l~~eevvd~i~~l 224 (714)
T PRK09518 156 FLTASEEVRAARRSGQAVS----G---VGAAVLEDVAAR--DEADS--KVTSFLSAAEGVTTLDTSDLDFAETLDLLIGL 224 (714)
T ss_pred EEECCHHHHHHHHHHHHHC----C---CHHHHHHHHHHH--HHHCC--CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9979989999887764432----2---067899999864--13203--23576535898089868989799999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780240|r 191 LVSVR 195 (201)
Q Consensus 191 l~~~~ 195 (201)
++...
T Consensus 225 v~~~~ 229 (714)
T PRK09518 225 IEDAI 229 (714)
T ss_pred HHHHH
T ss_conf 98754
No 54
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.00 E-value=4.2e-09 Score=77.81 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=93.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHHCC-CCCC
Q ss_conf 99987889996789999999718948957899999996001456666776413445541035665---5542023-2225
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQV---VCDRIRL-PDCD 78 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~l---i~~~l~~-~~~~ 78 (201)
|++||+.||||+|+++.||+++|++++..-|+ ....-.+-|.+|....|+--... +.+.+.. ....
T Consensus 11 iVVMGVsGsGKSTig~~LA~~l~~~fiegDdf----------Hp~~Ni~KM~~GiPLtD~DR~pWL~~l~~~~~~~~~~~ 80 (177)
T PRK11545 11 YVLMGVSGSGKSAVASAVAHQLHAAFLDGDFL----------HPRCNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN 80 (177)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCCC----------CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99984798999999999999819985536555----------89999998628999986888999999999999997269
Q ss_pred CEEEE--CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 31786--3801112457888766653125222103555422125664233112323334556567898999999999999
Q gi|254780240|r 79 SGFIL--DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRK 156 (201)
Q Consensus 79 ~g~il--DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~ 156 (201)
.+.|+ .+.-|.+.+. +.. +.+.-.+++|+.+.+++.+|+..|..+=- .++.+.-.|+...
T Consensus 81 ~~~VlaCSALKr~YRd~------Lr~-~~~~~~fv~L~g~~~~i~~Rl~~R~~HFm----------p~~LL~SQf~tLE- 142 (177)
T PRK11545 81 KVSLIVCSALKKHYRDL------LRE-GNPNLSFIYLKGDFDVIESRLKARKGHFF----------KTQMLVTQFETLQ- 142 (177)
T ss_pred CCEEEEECCCCHHHHHH------HHH-CCCCEEEEEECCCHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHC-
T ss_conf 96699870111999999------980-69975999972999999999974646899----------8789998999817-
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 756999999967979999389988999999999999
Q gi|254780240|r 157 TILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 157 ~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
.|- ..+ ..++.||.++++++|.++|.++|.
T Consensus 143 --~P~---~~E-~~~~~vdi~~~~e~iv~~il~~l~ 172 (177)
T PRK11545 143 --EPG---ADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (177)
T ss_pred --CCC---CCC-CCEEEEECCCCHHHHHHHHHHHHH
T ss_conf --999---888-986999789999999999999997
No 55
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.00 E-value=1e-08 Score=75.34 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=90.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCC-----
Q ss_conf 699987889996789999999718948957899999996001456666776413-44554103566555420232-----
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMES-GSLISDAIVNQVVCDRIRLP----- 75 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~-G~lvpd~ii~~li~~~l~~~----- 75 (201)
||.++|.+||||+|+++.||+++|++.+.+.+.+.+. .|.-|.+++.. |+--==++-...+.+-+...
T Consensus 135 rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~~IEk~------aG~sI~eIFa~~GE~~FR~~E~~~L~~ll~~~~~~VI 208 (304)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVL 208 (304)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 4798899999888999999999598977877999999------2999999999868899999999999998711699899
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 22531786380111245788876665312522210355542212566423311232333455656789899999999999
Q gi|254780240|r 76 DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYR 155 (201)
Q Consensus 76 ~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~ 155 (201)
.+..|.|++ |.|.+ .+.. --.||+|+++.+++++|+.+.....+ +.. .+|-.+. |+.-.
T Consensus 209 AtGGGiV~~--~~n~~------~L~~-----~g~vVwL~aspe~l~~Rv~~~gd~RP---Ll~-~~~a~e~----L~~ll 267 (304)
T PRK08154 209 ATGGGIVSE--PATFD------LLLS-----HCYTVWLKASPEEHMARVRAQGDLRP---MAD-NREAMED----LRRIL 267 (304)
T ss_pred EECCCCCCC--HHHHH------HHHH-----CCEEEEEECCHHHHHHHHHCCCCCCC---CCC-CCCHHHH----HHHHH
T ss_conf 728721278--89999------9996-----89899997999999999864899999---999-9888999----99999
Q ss_pred HHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHHHH
Q ss_conf 9756999999967979999389-98899999999999999
Q gi|254780240|r 156 KTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 156 ~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~~~ 194 (201)
+.- ..+|.+. -+.||.+ ++++++++++...+...
T Consensus 268 ~~R---~plY~~A--D~~IdTsg~tvees~~~L~~lv~~~ 302 (304)
T PRK08154 268 ASR---EPLYARA--DAVVDTSGLTVEASLARLRELVRPA 302 (304)
T ss_pred HHH---HHHHHHC--CEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 987---8899868--9898799999999999999999986
No 56
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.98 E-value=6.8e-10 Score=82.77 Aligned_cols=101 Identities=31% Similarity=0.362 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99987889996789999999718948957899999996001456666776413445541035665554202322253178
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGFI 82 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~g~i 82 (201)
|.|=|||||||+|+|+.||++||+.|+++|.|-.+++..... .. .. .| .+-..+.+.........|+|
T Consensus 2 IaIdGpagsGKsT~ak~lA~~l~~~~ldtG~ir~~ev~~~~s------~i-a~---~~--~VR~~l~~~Qr~~~~~~~~V 69 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLAS------EV-AA---IP--EVRKALDERQRELAKKPGIV 69 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHH------HH-CC---CH--HHHHHHHHHHHHHHHCCCEE
T ss_conf 888689978989999999999099077665425489989999------98-19---78--89999999999997669968
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 63801112457888766653125222103555422125664233
Q gi|254780240|r 83 LDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQV 126 (201)
Q Consensus 83 lDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~ 126 (201)
+|| |...-. -.+ .-++-|+|+++.++--+|...
T Consensus 70 ~eG--RDigtv-------V~P--~A~lKifL~As~e~RA~RR~~ 102 (147)
T cd02020 70 LEG--RDIGTV-------VFP--DADLKIFLTASPEVRAKRRAK 102 (147)
T ss_pred EEC--CCCCCE-------ECC--CCCEEEEEECCHHHHHHHHHH
T ss_conf 971--310102-------446--747677775898999999999
No 57
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.94 E-value=5.2e-09 Score=77.20 Aligned_cols=108 Identities=16% Similarity=0.256 Sum_probs=67.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 69998788999678999999971894895789999999600145666677641-34455410356655542023222531
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSG 80 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g 80 (201)
+|+++|.|||||||+++.||++++++.+.+-+++.+. .|.-+++.+. .|+--=-++-.+++.+-.. ..+
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~----~~~ 70 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQR------AGMSIPEIFAEEGEEGFRELEREVLLLLLT----KEN 70 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH------HCCCHHHHHHHCCHHHHHHHHHHHHHHHHC----CCC
T ss_conf 9899889999889999999999798979685999999------499999999874938789999999999856----898
Q ss_pred EEEC---CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7863---8011124578887666531252221035554221256642331
Q gi|254780240|r 81 FILD---GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVR 127 (201)
Q Consensus 81 ~ilD---GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R 127 (201)
.|+. |.|-+.+..+.+ .. -..||+|+++.+++.+|+...
T Consensus 71 ~VIs~GGG~v~~~~~~~~l----~~----~~~vI~L~~~~~~l~~Rl~~~ 112 (154)
T cd00464 71 AVIATGGGAVLREENRRLL----LE----NGIVVWLDASPEELLERLARD 112 (154)
T ss_pred EEEECCCCCCCCHHHHHHH----HH----CCEEEEEECCHHHHHHHHHCC
T ss_conf 5997389733689999999----95----790899957999999996079
No 58
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.94 E-value=1e-07 Score=69.12 Aligned_cols=75 Identities=24% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC--CHHH
Q ss_conf 52221035554221256642331123233345565678989999999999997569999999679799993899--8899
Q gi|254780240|r 105 CAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGML--DMDE 182 (201)
Q Consensus 105 ~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~--~~~e 182 (201)
.+|++||+|++|.+++.+|+..|......+ . ..+ --++|...++.. .+....+...+..+|.++ +.++
T Consensus 141 ~~PdlvIYL~a~pe~~~~RI~kRgR~~E~~---I----~~~-YL~~L~~~ye~~--fl~~~~~~~~vlv~D~~~~~~~~~ 210 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKRIKKRGDPHEMK---V----TSA-YLQDIENAYKKT--FLPEISEHSEVLQYDWTEAGDTEK 210 (219)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCHHHCC---C----CHH-HHHHHHHHHHHH--HHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 999989998399999999999839475408---9----999-999999999999--999886589679987665665999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780240|r 183 VSRSIDS 189 (201)
Q Consensus 183 V~~~I~~ 189 (201)
|.++|..
T Consensus 211 v~~~~e~ 217 (219)
T cd02030 211 VVEDIEY 217 (219)
T ss_pred HHHHHHH
T ss_conf 9999984
No 59
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.93 E-value=3.2e-08 Score=72.27 Aligned_cols=154 Identities=16% Similarity=0.282 Sum_probs=84.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCC---
Q ss_conf 9699987889996789999999718948957899999996001456666776413-445541035665554202322---
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMES-GSLISDAIVNQVVCDRIRLPD--- 76 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~-G~lvpd~ii~~li~~~l~~~~--- 76 (201)
|||+++|+|||||||+++.||+++|++.+.+-+.+.+. .|.-|.++.+. |+--==++-.+++.+-+....
T Consensus 1 m~I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~~Ie~~------~G~sI~eIF~~~GE~~FR~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRISEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 94999899999877999999998397956477999998------599888999887889999999999999860899699
Q ss_pred -CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -2531786380111245788876665312522210355542212566423311232333455656789899999999999
Q gi|254780240|r 77 -CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYR 155 (201)
Q Consensus 77 -~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~ 155 (201)
...|.+++ |.|. .. +.. ..|++|+++.+++.+|+.++. +..-+ | .. .|++.-+
T Consensus 75 atGGGavl~--~~nr---~~----L~~-----~~vV~L~a~~e~l~~R~~~~~------RPLL~-~-~~----~rl~~L~ 128 (488)
T PRK13951 75 ATGGGVVID--PENR---EL----LKK-----EKTLFLYAPPEVLMERVTTEN------RPLLR-E-GK----ERIREIW 128 (488)
T ss_pred ECCCCCCCC--HHHH---HH----HHC-----CCEEEEECCHHHHHHHHCCCC------CCCCC-C-CH----HHHHHHH
T ss_conf 769823289--9999---99----964-----988999899999999837899------98889-9-48----9999999
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 97569999999679799993899889999999999
Q gi|254780240|r 156 KTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSL 190 (201)
Q Consensus 156 ~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~ 190 (201)
++-.|+ |++-.. +.++...+.+.+.+.+...
T Consensus 129 ~~R~p~---Y~e~~~-i~~~~~~~~~~~a~~~~~~ 159 (488)
T PRK13951 129 ERRKQF---YTEFRG-IDTSKLNEWETTALVVLEA 159 (488)
T ss_pred HHHHHH---HHHHCC-EECCCCCCHHHHHHHHHHH
T ss_conf 987688---998541-0046897266699999998
No 60
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.85 E-value=1.2e-08 Score=74.85 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=67.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHHCC--CCC
Q ss_conf 9998788999678999999971894895789999999600145666677641344554103---56655542023--222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI---VNQVVCDRIRL--PDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~i---i~~li~~~l~~--~~~ 77 (201)
|+++|++||||+|+|+.||+++|++||. ||.+|.. ....-|.+|....|+- +..-+..++.. ...
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~-~D~~h~~---------~n~~km~~G~pL~d~dr~~wl~~l~~~~~~~~~~~ 71 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID-GDDLHPP---------ANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASA 71 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC-CCCCCCH---------HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8999189999999999999971995641-5433547---------68999867999885237899999999999999844
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 53178638011124578887666531252221035554221256642331123
Q gi|254780240|r 78 DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 78 ~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
..++|+|-=--...+-..|..... ...-.+|+|+++.+++.+|+..|..+
T Consensus 72 g~~vVv~cSaLk~~yR~~l~~~~~---~~~v~fi~L~~~~~~l~~Rl~~R~~h 121 (150)
T cd02021 72 GEGVVVACSALKRIYRDILRGGAA---NPRVRFVHLDGPREVLAERLAARKGH 121 (150)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC---CCCEEEEEEECCHHHHHHHHHHCCCC
T ss_conf 998799843323999999995276---89858999869999999999846357
No 61
>KOG3220 consensus
Probab=98.82 E-value=4.2e-08 Score=71.52 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=109.1
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH----------------
Q ss_conf 9699-98788999678999999971894895789999999600145666677641344554103----------------
Q gi|254780240|r 1 MRII-FLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI---------------- 63 (201)
Q Consensus 1 m~I~-i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~i---------------- 63 (201)
|.|+ +.|+-||||+|+++.+. .+|.+.|.+..+-|+.++.+++-.+++.+..-.--|.+|..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCCEECHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCCHHH
T ss_conf 9699940565667379999999-749957627899999855998078999998484000568841689986787089889
Q ss_pred -------HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -------566555420232225317863801112457888766-653125222103555422125664233112323334
Q gi|254780240|r 64 -------VNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAF-ISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASE 135 (201)
Q Consensus 64 -------i~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~-l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~ 135 (201)
+-..+...|.+.-+. +++-|++--.-.+..|.+. +.+ -+..+++..|+.++-.+|+..|. .
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPLLFE~~~~~---~~~~tvvV~cd~~~Ql~Rl~~Rd------~ 148 (225)
T KOG3220 80 RQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPLLFEAKLLK---ICHKTVVVTCDEELQLERLVERD------E 148 (225)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--HHHCCCEEEEEECHHHHHHHHHH---HEEEEEEEEECCHHHHHHHHHHC------C
T ss_conf 9998731338999999999999--99668828999226888876774---53258999989089999998744------6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 55656789899999999999975699999996797999938998899999999999999987
Q gi|254780240|r 136 KSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKK 197 (201)
Q Consensus 136 ~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~ 197 (201)
+ +++..++|++.-+. +.+--+.. -+.||.+.++++.+++|..++.-+.+.
T Consensus 149 l------se~dAe~Rl~sQmp----~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220 149 L------SEEDAENRLQSQMP----LEKKCELA--DVVIDNNGSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred C------CHHHHHHHHHHCCC----HHHHHHHH--HEEECCCCCHHHHHHHHHHHHHHHCCH
T ss_conf 4------69999989873298----78999863--164217998689999999999985331
No 62
>pfam01202 SKI Shikimate kinase.
Probab=98.75 E-value=3.5e-07 Score=65.73 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCEEEEC---
Q ss_conf 8999678999999971894895789999999600145666677641-344554103566555420232225317863---
Q gi|254780240|r 9 PGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSGFILD--- 84 (201)
Q Consensus 9 PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g~ilD--- 84 (201)
+||||||+++.||++++++++++.+++.+. .|.-+++.+. .|+--==++-.+++.+-+... +.||.
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~l~~~~----~~VIstGG 70 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLESEVLKELLAEH----NAVIATGG 70 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCC----CEEEEECC
T ss_conf 989779999999999699978872999988------78899999998198999999999999997169----94998078
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 80111245788876665312522210355542212566423311232333455656789899999999999975699999
Q gi|254780240|r 85 GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSY 164 (201)
Q Consensus 85 GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~ 164 (201)
|.|-+.+..+. +.. -..||+|+++.+++.+|+..+...|.- ..+|..+.+.+ .|. +- ..+
T Consensus 71 G~v~~~~~~~~----L~~----~g~vi~L~~~~~~i~~Rl~~~~~RPll-----~~~~~~~~~~~---l~~-~R---~~~ 130 (158)
T pfam01202 71 GAVLSEENRDL----LRE----NGIVVYLDADPEVLLERLKADKTRPLL-----QDKDPEEELLE---LLF-ER---CPL 130 (158)
T ss_pred CCCCCHHHHHH----HHH----CCEEEEEECCHHHHHHHHCCCCCCCCC-----CCCCHHHHHHH---HHH-HH---HHH
T ss_conf 60258999999----995----792799849999999997179999989-----89987999999---999-99---999
Q ss_pred HHHCCCEEEECCC-CCHHHHHHHHHHHH
Q ss_conf 9967979999389-98899999999999
Q gi|254780240|r 165 YRDMGCLYIIDGM-LDMDEVSRSIDSLL 191 (201)
Q Consensus 165 y~~~~~l~~Idg~-~~~~eV~~~I~~~l 191 (201)
|.+.. -+.||.+ .++++|.++|.+.|
T Consensus 131 Y~~~a-~~~i~~~~~~~~ei~~~Ii~~l 157 (158)
T pfam01202 131 YEEAA-DIVVDTDESSPEEVAEEILEAL 157 (158)
T ss_pred HHHHC-CEEEECCCCCHHHHHHHHHHHH
T ss_conf 99869-9998799999999999999975
No 63
>KOG3327 consensus
Probab=98.73 E-value=8.8e-08 Score=69.51 Aligned_cols=173 Identities=23% Similarity=0.298 Sum_probs=98.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-----------HHHHHHH
Q ss_conf 69998788999678999999971894895789999999600145666677641344554103-----------5665554
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI-----------VNQVVCD 70 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~i-----------i~~li~~ 70 (201)
.|++-|--.|||+|||.+|.+...-- +....++| .-+.-|..|+.|..|+.+-.-+||.+ ...+|.+
T Consensus 7 liV~eGlDrsgKstQ~~~l~~~l~~~-~~~~~l~~-FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i~e 84 (208)
T KOG3327 7 LIVLEGLDRSGKSTQCGKLVESLIPG-LDPAELLR-FPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLIKE 84 (208)
T ss_pred EEEEECCCCCCCEEEHHHHHHHHHHC-CCHHHHHH-CCHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 77653213477452066799998705-67577661-51000441177899987415773789999760531667999999
Q ss_pred HHCCCCCCCEEEECCCHH---HHHHHHHHH-HHHH--HHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 202322253178638011---124578887-6665--312-522210355542212566423311232333455656789
Q gi|254780240|r 71 RIRLPDCDSGFILDGYPR---TVDQAKSLH-AFIS--NMD-CAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDK 143 (201)
Q Consensus 71 ~l~~~~~~~g~ilDGFPR---t~~Qa~~l~-~~l~--~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~ 143 (201)
.+.+.. .+|.|-|-- +..-|+.|+ .+.. +.+ .+||+|++|+++++.+.+| -|+..+ |- .
T Consensus 85 ~l~kg~---~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~E--------ry--e 150 (208)
T KOG3327 85 KLAKGT---TLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGEE--------RY--E 150 (208)
T ss_pred HHHCCC---EEEEECCEECCHHHHHHCCCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHH-CCCCHH--------HH--H
T ss_conf 985498---299963430104666423788623338765898988689973798999874-476546--------77--7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999997569999999-679799993899889999999999999998
Q gi|254780240|r 144 YDVFLKRIENYRKTILPLSSYYR-DMGCLYIIDGMLDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 144 ~e~i~~Rl~~y~~~~~pv~~~y~-~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k 196 (201)
...+.++...+..... + +...++.+||++++++|.++|..+++.+..
T Consensus 151 ~v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327 151 TVAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHHHHHHHHHH------HCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 7899999999999998------44588758974672599999999999987305
No 64
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.71 E-value=5.3e-08 Score=70.91 Aligned_cols=169 Identities=24% Similarity=0.289 Sum_probs=91.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHH----H---HHHH------HHHHHHHH-------------HHHH
Q ss_conf 9699987889996789999999718948957899999----9---9600------14566667-------------7641
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA----E---VDRN------TLLGKQVK-------------GSME 54 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~----~---~~~~------s~~g~~i~-------------~~l~ 54 (201)
|-|-|=||.||||||+|+.+|++++|.+||+|.+.|. + ..+. ..+...+. ..+-
T Consensus 3 ~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrsL~~~~d~~~E~~L~~L~~~~di~f~~~~~~~~v~~ 82 (223)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRSLQNRVDLTDEDALLELISQLDIRFIPTAGEVKVFL 82 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEEE
T ss_conf 63762377646557899999986295021443289999999998874068856848899998632604421577506887
Q ss_pred CCCCCCCHHHHHH-----------------HHHHHCCCCCC--CEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 3445541035665-----------------55420232225--3178638011124578887666531252221035554
Q gi|254780240|r 55 SGSLISDAIVNQV-----------------VCDRIRLPDCD--SGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 55 ~G~lvpd~ii~~l-----------------i~~~l~~~~~~--~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
+|.=|++.|.++- +..+.++-... .|+|+|| |.+--.. +.+ -.+-|||++
T Consensus 83 nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dG--RDiGTvV-----fPn----A~~KiFLdA 151 (223)
T TIGR00017 83 NGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADG--RDIGTVV-----FPN----AELKIFLDA 151 (223)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEC--CCCCCEE-----CCC----CCCCEEECC
T ss_conf 07771322068358999998723777999999999998751589758845--5237446-----788----751324317
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHH----HHHHH-HHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHH
Q ss_conf 221256642331123233345565678989----99999-999999756999999967979999389-988999999999
Q gi|254780240|r 116 EDASMFKRIQVRVLEAIASEKSVRSDDKYD----VFLKR-IENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDS 189 (201)
Q Consensus 116 ~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e----~i~~R-l~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~ 189 (201)
+-++--+|-..-..... . .+-+.+ -|++| --.-..+..|+. ...-...+|.+ .++++|.+.+..
T Consensus 152 sve~RA~RR~~~~~~~g--~----~~~~~~~L~~eik~RD~~D~~R~~~PL~----~A~DA~~ldt~~lsi~~V~~~~l~ 221 (223)
T TIGR00017 152 SVEERAKRRYKDLQIKG--D----NEVNLEELIAEIKRRDDVDSSREVAPLK----KAKDALYLDTSNLSIDEVVEKILE 221 (223)
T ss_pred CHHHHHHHHHHHHHHHC--C----CHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 87899887699988741--5----0147999999997514013323435554----556516885475348899999986
Q ss_pred H
Q ss_conf 9
Q gi|254780240|r 190 L 190 (201)
Q Consensus 190 ~ 190 (201)
.
T Consensus 222 ~ 222 (223)
T TIGR00017 222 K 222 (223)
T ss_pred H
T ss_conf 0
No 65
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.70 E-value=1.1e-07 Score=68.79 Aligned_cols=164 Identities=14% Similarity=0.139 Sum_probs=93.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-CCEECHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHH-------HHH
Q ss_conf 99987889996789999999718-9489578999999960014----56666776413445541035665-------554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-VPQLSTGDMLRAEVDRNTL----LGKQVKGSMESGSLISDAIVNQV-------VCD 70 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-~~~is~gdllR~~~~~~s~----~g~~i~~~l~~G~lvpd~ii~~l-------i~~ 70 (201)
|+|.||.|+||+|+++.|.+... ...+|+.-.=|..-..+-+ .-..-...+++|.++-.+-+... +..
T Consensus 5 ivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~e~~g~dy~fvs~eeF~~~i~~g~F~~~w~~~g~~YG~~~~v~~ 84 (184)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEIDL 84 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEECCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHH
T ss_conf 99989986999999999984489988999872378999999682887999999999779829999866956670789999
Q ss_pred HHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 20232225317863801112457888766653125222103555422125664233112323334556567898999999
Q gi|254780240|r 71 RIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKR 150 (201)
Q Consensus 71 ~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~R 150 (201)
.+. ....++++|--.-..|++.- .. .--++|++..|.+++.+|+.+|.. |++|.|.+|
T Consensus 85 ~l~---~G~dVi~~g~~~~~~~~~~~---~~----~~~~~~~i~ps~~~L~~RL~~RGt------------Es~e~I~~R 142 (184)
T PRK10078 85 WLH---AGFDVVVNGSRAHLPQARAR---YQ----SALLPVCLQVSPEILRQRLENRGR------------ENASEINAR 142 (184)
T ss_pred HHH---CCCEEEEECHHHHHHHHHHH---CC----CCEEEEEECCCHHHHHHHHHHCCC------------CCHHHHHHH
T ss_conf 997---49949995179899999986---79----858999957999999999997299------------999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999975699999996797999938998899999999999999987
Q gi|254780240|r 151 IENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKK 197 (201)
Q Consensus 151 l~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~ 197 (201)
|+.-.. +. ...++.||-+.++++-.+++.++|..-++.
T Consensus 143 L~~A~~--------~~-~~d~~vInnDg~le~av~~l~~ii~~~~~~ 180 (184)
T PRK10078 143 LARAAR--------YQ-PQDCHTLNNDGSLRQSVDTLLTLLHQKEKH 180 (184)
T ss_pred HHHHCC--------CC-CCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 996121--------57-889999989988999999999999998740
No 66
>PRK08233 hypothetical protein; Provisional
Probab=98.67 E-value=5.9e-07 Score=64.32 Aligned_cols=166 Identities=19% Similarity=0.155 Sum_probs=93.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---CCCC
Q ss_conf 9998788999678999999971894895789999999600145666677641344554103566555420232---2253
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLP---DCDS 79 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~---~~~~ 79 (201)
|-|-|++||||||.|+.|.++++-..+..-|-.- ...++ ......++.+-- .|..-...+.+.+++. ....
T Consensus 6 IgIaGgSgSGKTtla~~l~~~l~~~~~~~~D~y~---~~~~~--~~~~~~~~~~~~-~d~~d~~~l~~~l~~l~~~~~~d 79 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD---FDNCP--EDICKWIDDGAN-YSEWVLTPLIKDIQELIAKSNVD 79 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCC---CCCCH--HHHHHHHCCCCC-CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9996888678999999999974677589966655---54687--889987406778-66666999999999985599872
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 17863801112457888766653125222103555422125664233112323334556567898999999999999756
Q gi|254780240|r 80 GFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTIL 159 (201)
Q Consensus 80 g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~ 159 (201)
-.|+||.=- ..+..+. .-.|+.|++++|.++.+.|-..|-....+| | +.+ .=+..|.+...
T Consensus 80 ~iIvEgil~------l~~~~lr---~l~D~kIfVdtp~Dirl~RRi~RDi~Er~g----r---~i~---svl~qY~~~Vr 140 (182)
T PRK08233 80 YIIVDYPFA------YLNSEMR---QYIDVTIFIDTPLDIAMARRILRDFKEDTG----N---EIH---NDLKHYLNYAR 140 (182)
T ss_pred EEEEEEEHH------HCCHHHH---HHHCEEEEECCCHHHHHHHHHHHHHHHHCC----C---CHH---HHHHHHHHHHH
T ss_conf 899964436------2689899---771878997286899999988888777618----8---789---99999999878
Q ss_pred HHHHHHHHC---CCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999967---9799993899889999999999999
Q gi|254780240|r 160 PLSSYYRDM---GCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 160 pv~~~y~~~---~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
|+-.-|-+- .-=..|||+.+++.+.+.|.+.|..
T Consensus 141 Pm~~~fvePsk~~ADiIId~~~aid~i~~~i~~~l~~ 177 (182)
T PRK08233 141 PLYLEALDTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred HHHHHHHCHHHHCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8999985700321968985860799999999999974
No 67
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.65 E-value=8.2e-08 Score=69.71 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=59.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 9699987889996789999999718948957----8999999960014566667764134455410356655542023--
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRL-- 74 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~----gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~-- 74 (201)
|-|+|-|+-|+||||.|..||++++..++.= --+|..--+.-..++-..| +-.+.+|.++
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~Q--------------iyFL~~Rfk~~k 70 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQ--------------IYFLLNRFKKIK 70 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_conf 089984464468789999999883885022224678479999876997419999--------------999999999999
Q ss_pred CCCCC-EEEEC------C-CHH-------HH--HHHH----HHHH---HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22253-17863------8-011-------12--4578----8876---66531252221035554221256642331123
Q gi|254780240|r 75 PDCDS-GFILD------G-YPR-------TV--DQAK----SLHA---FISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 75 ~~~~~-g~ilD------G-FPR-------t~--~Qa~----~l~~---~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
..++. +.++| - .+. |+ .+.+ .++. .+......||++|+|+|+-+++.+|+..|.++
T Consensus 71 ~~~~~~~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~ 150 (216)
T COG1428 71 KALSDKNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRP 150 (216)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
T ss_conf 98431555458543425788999899847888889999999998799873257899988999827899999999981997
No 68
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=98.62 E-value=3.9e-07 Score=65.44 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=89.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCC--------------
Q ss_conf 96999878899967899999997189489578999999960014566667764------1344554--------------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSM------ESGSLIS-------------- 60 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l------~~G~lvp-------------- 60 (201)
|=|-+.|+.||||||.|+.+.+ +|++.+++-.+.++-.+.+++....+.+.. +.|.+=-
T Consensus 1 ~iIgiTG~IgsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vF~d~~~~ 79 (179)
T pfam01121 1 LIVGLTGGIGSGKSTVANLFAD-LGVPIVDADVIARQVVEPGSPALAAIVDHFGPDILLADGQLDRRALRELVFSDPEEK 79 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-CCCCEEECHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHCCHHHH
T ss_conf 9899857864789999999998-799199180999999865858999999981998607788657999999985487999
Q ss_pred ---CHHHHHHHHHHHCCC--CC-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf ---103566555420232--22-531786380111245788876665312522210355542212566423311232333
Q gi|254780240|r 61 ---DAIVNQVVCDRIRLP--DC-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS 134 (201)
Q Consensus 61 ---d~ii~~li~~~l~~~--~~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~ 134 (201)
..++-+++.+.+... .+ ..-+++|. | .|.+ .......|.++++.||+++..+|+..|..-
T Consensus 80 ~~Le~iiHP~v~~~~~~~i~~~~~~~~v~ei-p-------LL~E--~~~~~~~D~ii~V~a~~~~r~~Rl~~R~~~---- 145 (179)
T pfam01121 80 QWLNAILHPLIRREMFKQLAQLTSPYVLLDV-P-------LLFE--SGLTKLCHRVLVVDAPVELQVERLMQRDGL---- 145 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-C-------CHHC--CCCCCCCCEEEEEECCHHHHHHHHHHCCCC----
T ss_conf 9999862599999999999866899699944-5-------0220--676534775999987999999999980599----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH
Q ss_conf 455656789899999999999975699999996797999938998899
Q gi|254780240|r 135 EKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDE 182 (201)
Q Consensus 135 ~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~e 182 (201)
+++.+.+|+..-. |..+.-+.. -..|+.+++++|
T Consensus 146 --------s~~~~~~~~~~Q~----~~~~k~~~a--D~vI~Nngsi~e 179 (179)
T pfam01121 146 --------SREQVQAIIAAQA----SREERLALA--DDVLDNDSGLAE 179 (179)
T ss_pred --------CHHHHHHHHHHCC----CHHHHHHHC--CEEEECCCCCCC
T ss_conf --------9999999999689----989999869--999989898896
No 69
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=98.60 E-value=8.7e-07 Score=63.28 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=102.1
Q ss_pred CE-EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHH-----H-CCCC--------C-C----
Q ss_conf 96-999878899967899999997189489578999999960014566667764-----1-3445--------5-4----
Q gi|254780240|r 1 MR-IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSM-----E-SGSL--------I-S---- 60 (201)
Q Consensus 1 m~-I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l-----~-~G~l--------v-p---- 60 (201)
|. |=+.|+-||||||++..|++ +|.+.|+.-.+-|+-++.+++.-..+.+.. . .|.+ | .
T Consensus 1 M~~IGLTGGIgsGKStv~~~l~~-~G~~viDaD~iar~v~~pg~~~~~~iv~~FG~~il~~dG~ldR~~L~~~vF~d~~~ 79 (394)
T PRK03333 1 MLRIGLTGGIGAGKSTVSATLAQ-LGAVVVDGDVLAREVVEPGTEGLAALVEAFGDDILLADGALDRPALAAKAFADDEA 79 (394)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHCCHHH
T ss_conf 94998306755579999999998-79949985799999943986899999998598963889735699999888389999
Q ss_pred ----CHHHHHHHHHHHCCC---CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----103566555420232---2253178638011124578887666531252221035554221256642331123233
Q gi|254780240|r 61 ----DAIVNQVVCDRIRLP---DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133 (201)
Q Consensus 61 ----d~ii~~li~~~l~~~---~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~ 133 (201)
+.|+-.++.+++.+. -....+|+-..|--.+ .......+.|++.+||.++-++|+..|.--
T Consensus 80 ~~~Ln~I~HP~Vr~~~~~~~~~~~~~~vvv~DiPLL~E---------~~~~~~~d~VvvV~~p~e~qv~RL~~r~gl--- 147 (394)
T PRK03333 80 RAVLNGIVHPLVAARRAELIAAAPEDAVVVEDIPLLVE---------SGMAPLFPLVVVVHADVEVRVRRLVEQRGM--- 147 (394)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECHHEE---------CCCCCCCCEEEEEECCHHHHHHHHHHCCCC---
T ss_conf 99998615899999999999855799779994001132---------263036997999989889999999863798---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3455656789899999999999975699999996797999938998899999999999
Q gi|254780240|r 134 SEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 (201)
Q Consensus 134 ~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l 191 (201)
+++-.++|+..-.....-. -+ -=..||.+++.++..++|...-
T Consensus 148 ---------s~~~A~aRIaaQ~~~e~r~--a~----AD~VIDNsGt~~~l~~~v~~lW 190 (394)
T PRK03333 148 ---------AEADARARIAAQASDEQRR--AA----ADVWLDNSGTPEELVEAVRDLW 190 (394)
T ss_pred ---------CHHHHHHHHHHCCCHHHHH--HH----CCEEEECCCCHHHHHHHHHHHH
T ss_conf ---------9999999999479999999--85----9999969899999999999999
No 70
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=98.59 E-value=2.2e-07 Score=66.98 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=73.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998788999678999999971---89489578999999960014----5666677641344554103566555420232
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTL----LGKQVKGSMESGSLISDAIVNQVVCDRIRLP 75 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~----~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~ 75 (201)
||+-|+|||||||.+..+.+.+ |+.+|+. |-+|.....-.+ .+.....+... -...++..++...+
T Consensus 15 i~laG~pGAGKS~~~~~~~~~~~~~~~v~In~-D~~r~~~P~y~~l~~~~~~~~~~~~~~---~a~~~~~~~~~~a~--- 87 (191)
T pfam06414 15 VLLGGQPGAGKTELARALLEELGGGNVVRIDP-DELRTYHPDYDELQKADPKDASELTQP---DASRWVEKLIDYAI--- 87 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEECC-HHHHHHHHHHHHHHHCCHHHHHHHHHH---HHHHHHHHHHHHHH---
T ss_conf 99957998888999999987537899389713-587887774786554076778999899---99999999999999---
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2253178638011124578887666531252221035554221256642331123
Q gi|254780240|r 76 DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 76 ~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
....++|+||--++.+-...+...+...|..+ .++++.+|.++...|...|-..
T Consensus 88 ~~r~n~iiegT~~~~~~~~~~~~~lk~~GY~v-~v~~Va~~~e~S~~r~~~Ry~~ 141 (191)
T pfam06414 88 ERGYNIILEGTLRSPDVARKLARKLKAAGYEV-EVYVVAVPPELSWLGVLDRYEE 141 (191)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHHHH
T ss_conf 75999898577789799999999999789979-9999988999999999999985
No 71
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.56 E-value=1.6e-06 Score=61.57 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=80.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH--HH-------HHHHHHHHHCCCCCCCHHH------HHH
Q ss_conf 99987889996789999999718948957899999996001--45-------6666776413445541035------665
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNT--LL-------GKQVKGSMESGSLISDAIV------NQV 67 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s--~~-------g~~i~~~l~~G~lvpd~ii------~~l 67 (201)
|++-|++|+||+|.|..||.++|++++-..|.+|+.+..-. ++ .-.+-..+.....-+..++ ++.
T Consensus 95 ILigGtsGvGKSTlA~~LA~rLgI~~visTD~IREVmR~~~~~el~P~Lh~SSy~Awk~l~~~~~~~~~~I~Gf~~Q~~~ 174 (306)
T PRK04220 95 ILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPWEEPDHILGFERHVEP 174 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99858998878999999999709883422216999998524830175132275131002367877865799999999999
Q ss_pred HHHHHC----CC-CCCCEEEECCC---HHHHHHHHHHHHHHHHHCCCCC-CHHHHHH-HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 554202----32-22531786380---1112457888766653125222-1035554-2212566423311232333455
Q gi|254780240|r 68 VCDRIR----LP-DCDSGFILDGY---PRTVDQAKSLHAFISNMDCAID-AVIELRV-EDASMFKRIQVRVLEAIASEKS 137 (201)
Q Consensus 68 i~~~l~----~~-~~~~g~ilDGF---PRt~~Qa~~l~~~l~~~~~~~~-~vi~L~~-~~~~~~~R~~~R~~~~~~~~~~ 137 (201)
+...+. .. ......||+|. |+=+ ....... ++ +.+.|.+ +++.-.+|+..|....
T Consensus 175 V~~gI~aiI~Ra~~eg~slIIEGVHlvP~~i------~~~~~~~---~~vi~fll~i~dEe~H~~RF~~Ra~~~------ 239 (306)
T PRK04220 175 VLVGVEAVIERALKEGISVIIEGVHIVPGFI------KEKYLNM---PNVFMFVLTLSDEETHKARFYARARVS------ 239 (306)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHH------HHHHHCC---CCEEEEEEEECCHHHHHHHHHHHCCCC------
T ss_conf 9999999999999729968998430377887------7776438---838999999788899999999850447------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 6567898999999999999756999999----967979999389988999999999
Q gi|254780240|r 138 VRSDDKYDVFLKRIENYRKTILPLSSYY----RDMGCLYIIDGMLDMDEVSRSIDS 189 (201)
Q Consensus 138 ~R~DD~~e~i~~Rl~~y~~~~~pv~~~y----~~~~~l~~Idg~~~~~eV~~~I~~ 189 (201)
.|+- +|+-.|-++..-+=+|. ++.+ +-.||.. ++++..+.|..
T Consensus 240 ~R~~-------~rYl~~f~~IR~IQ~yLv~~A~~~~-vPiI~N~-~id~tv~~i~~ 286 (306)
T PRK04220 240 KRPA-------ERYLKHFDEIREIQDYIVEKAKEHG-VPVIENV-SIEETVDKILE 286 (306)
T ss_pred CCCH-------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCC-CHHHHHHHHHH
T ss_conf 8987-------8999979999999999999988809-9810686-68999999999
No 72
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.55 E-value=1.7e-07 Score=67.69 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=73.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHH------HCCCCC-----------------
Q ss_conf 999878899967899999997189489578999999960014566667764------134455-----------------
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSM------ESGSLI----------------- 59 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l------~~G~lv----------------- 59 (201)
|-+.|++||||||.|+.++ ++|++++++.++.++-.+.++.....+.... ..|.+-
T Consensus 2 igiTG~igSGKStv~~~l~-~~g~~v~~aD~i~~~l~~~~~~~~~~i~~~fg~~~~~~~g~i~r~~L~~~vf~~~~~~~~ 80 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLK-ELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKK 80 (179)
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCEEEECHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHCCHHHHHH
T ss_conf 8863787578999999999-879909963599999886076999999987371302888867599999998669899999
Q ss_pred CCHHHHHHHHHHHCCC--CC-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4103566555420232--22-531786380111245788876665312522210355542212566423311
Q gi|254780240|r 60 SDAIVNQVVCDRIRLP--DC-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRV 128 (201)
Q Consensus 60 pd~ii~~li~~~l~~~--~~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~ 128 (201)
-+.++-+++...+... .+ ...+++-.-|= .++ .+.....|.+++++||+++..+|+..|.
T Consensus 81 Le~iihP~v~~~~~~~~~~~~~~~~vi~evpL------L~E---~~~~~~~d~ii~V~a~~~~r~~R~~~R~ 143 (179)
T cd02022 81 LEAITHPLIRKEIEEQLAEARKEKVVVLDIPL------LFE---TGLEKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE------EEE---CCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 98572799999999999863035633676555------420---5876557758999868688999999802
No 73
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.50 E-value=1.3e-06 Score=62.11 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=86.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH---HHH----HHHHHHHHHHCCCCCCCHHH----HHHHHHH
Q ss_conf 999878899967899999997189489578999999960---014----56666776413445541035----6655542
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR---NTL----LGKQVKGSMESGSLISDAIV----NQVVCDR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~---~s~----~g~~i~~~l~~G~lvpd~ii----~~li~~~ 71 (201)
|+|+||+||||+|+++.|.+.+.-.++++.--=|..... +-+ .-...+..+++|.++--... -..-.+.
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~~~~ 83 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSP 83 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEECCCCCCCCHHH
T ss_conf 99989998899999999997689944887044689799877887347850899999986496488767716763574799
Q ss_pred HCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 0232-2253178638011124578887666531252221035554-2212566423311232333455656789899999
Q gi|254780240|r 72 IRLP-DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV-EDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLK 149 (201)
Q Consensus 72 l~~~-~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~-~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~ 149 (201)
+... ...+-.|+|.=|.-..+.+ +.. ..+ .+|++.. +.+++.+|+..|. .|+++.+++
T Consensus 84 i~~~~~~gk~vil~id~~G~~~lk---~~~----~~~-~~IfI~pps~~~L~~RL~~Rg------------~e~~~~i~~ 143 (180)
T TIGR03263 84 VEEALAAGKDVLLEIDVQGARQVK---KKF----PDA-VSIFILPPSLEELERRLRKRG------------TDSEEVIER 143 (180)
T ss_pred HHHHHHHCCCEEEECCHHHHHHHH---HHC----CCE-EEEEEECCCHHHHHHHHHHCC------------CCCHHHHHH
T ss_conf 999996099899987899999999---758----864-899996889999999999648------------999899999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999999756999999967979999389988999999999999
Q gi|254780240|r 150 RIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 150 Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
||..+..+. ++.. .-.+..+|. +.++.++++.++|.
T Consensus 144 Rl~~a~~E~----~~~~-~fD~vIvNd--dle~a~~~l~~ii~ 179 (180)
T TIGR03263 144 RLAKAKKEI----AHAD-EFDYVIVND--DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHH----HHHH-CCCEEEECC--CHHHHHHHHHHHHC
T ss_conf 999999999----8774-399999897--99999999999971
No 74
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.50 E-value=7.7e-06 Score=57.34 Aligned_cols=164 Identities=17% Similarity=0.232 Sum_probs=90.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCEECHHHHHHHH-HHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 69998788999678999999971-89489578999999-96001-45666677641344554103566555420232225
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL-NVPQLSTGDMLRAE-VDRNT-LLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCD 78 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~-~~~~is~gdllR~~-~~~~s-~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~ 78 (201)
.+++.|-||+||||+++...+.. ..+.+..|+++=+. .+.+- +.-.+++ + .|.+.-..+...+.+.....
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R------k-lp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR------K-LPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHCCCCCHHHHH------C-CCHHHHHHHHHHHHHHHHHH
T ss_conf 9999757988726699999987752200007699999999838720289885------2-98889999999999999974
Q ss_pred CE-EEEC-------------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 31-7863-------------801112457888766653125222103555422125664233112323334556567898
Q gi|254780240|r 79 SG-FILD-------------GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKY 144 (201)
Q Consensus 79 ~g-~ilD-------------GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~ 144 (201)
.. .|+| |.|.-+ +. .+.||.++.|+.+.+.+..|-.. |+ ...|..+..
T Consensus 79 ~~~iivDtH~~IkTP~GylpgLP~~V---------l~--~l~pd~ivllEaDp~~Il~RR~~---D~----~r~Rd~es~ 140 (189)
T COG2019 79 ALEIIVDTHATIKTPAGYLPGLPSWV---------LE--ELNPDVIVLLEADPEEILERRLR---DS----RRDRDVESV 140 (189)
T ss_pred HCCEEEECCCEECCCCCCCCCCCHHH---------HH--HCCCCEEEEEECCHHHHHHHHHC---CC----CCCCCCCCH
T ss_conf 20658732411147876677883999---------97--52988799993798999998722---61----204662108
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE-CCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999997569999999679-79999-3899889999999999999
Q gi|254780240|r 145 DVFLKRIENYRKTILPLSSYYRDMG-CLYII-DGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 145 e~i~~Rl~~y~~~~~pv~~~y~~~~-~l~~I-dg~~~~~eV~~~I~~~l~~ 193 (201)
|.++...+.-+.... .|---.+ .+..| |-+..+++-..+|...|..
T Consensus 141 e~i~eHqe~nR~aA~---a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 141 EEIREHQEMNRAAAM---AYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999---999970884899747888878889999999851
No 75
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=98.43 E-value=2.9e-07 Score=66.24 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=93.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHHCC
Q ss_conf 99987889996789999999718-----94895789999999600145666677641344554103---56655542023
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI---VNQVVCDRIRL 74 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~i---i~~li~~~l~~ 74 (201)
+||||+.||||||+|..|++++| +.+|. ||-|- -..=-+-|.+|.+..|+= +..-+.+++.+
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yie-GDdLH---------P~~Ni~KMs~GiPL~DdDR~pWL~~l~~~~~~ 70 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYIE-GDDLH---------PAANIEKMSRGIPLNDDDRWPWLKNLADALAQ 70 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCC---------CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 967602786288999999998543157887568-86667---------87779873178888701204379999999999
Q ss_pred CCC--C-CEEEEC--CCHHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 222--5-317863--80111245788876665---312522210355542212566423311232333455656789899
Q gi|254780240|r 75 PDC--D-SGFILD--GYPRTVDQAKSLHAFIS---NMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDV 146 (201)
Q Consensus 75 ~~~--~-~g~ilD--GFPRt~~Qa~~l~~~l~---~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~ 146 (201)
... . .+.||- -.=|.+. ..+- ....+.-.+|+|..+.+++.+|+..|.-|=-... .
T Consensus 71 ~~~~~~~~~~~~~CSALKr~YR------D~LR~s~~~~~~~~~FiyL~~~~~~~~~R~~~RkGHFMka~----------m 134 (175)
T TIGR01313 71 AAAKNKVHLVIITCSALKRKYR------DILRSSLEEAEPELHFIYLSGSKEVILKRMKSRKGHFMKAD----------M 134 (175)
T ss_pred HHHCCCCCCEEEEEECCHHHHH------HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCH----------H
T ss_conf 9845774544788401113555------66542202689843788636898999999610789986204----------7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999756999999967979999389988999999999999
Q gi|254780240|r 147 FLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 147 i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
+. ..|..-..|-.+ +-..+..||.+++++.+.++..+++.
T Consensus 135 ~~---SQf~~LE~P~~n---DE~d~~~vd~~~~~e~~~~~~~~~v~ 174 (175)
T TIGR01313 135 LE---SQFEALEEPTAN---DETDVVTVDIDQPLEAVEEDCLAVVL 174 (175)
T ss_pred HH---HHHHHHCCCCCC---CCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89---999972788888---88543786068865789999999982
No 76
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.42 E-value=2.1e-06 Score=60.90 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=85.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CEECHHHHHHH----HHHHHH---HHHHHHHHHHHCCCCCCCHHHHH----HHHH
Q ss_conf 999878899967899999997189-48957899999----996001---45666677641344554103566----5554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV-PQLSTGDMLRA----EVDRNT---LLGKQVKGSMESGSLISDAIVNQ----VVCD 70 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~-~~is~gdllR~----~~~~~s---~~g~~i~~~l~~G~lvpd~ii~~----li~~ 70 (201)
|+|.||+|+||+|++++|.+.+.- .++++.--=|. |++... -.-......+++|.++--..+.. .-.+
T Consensus 10 ivisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g~~YGT~~~ 89 (208)
T PRK00300 10 IVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFGNYYGTPRE 89 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCEECCHH
T ss_conf 99999998899999999997299868998974688989987789657996199999998628366789983870352469
Q ss_pred HHCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCC-CHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 20232-225317863801112457888766653125222-1035554-22125664233112323334556567898999
Q gi|254780240|r 71 RIRLP-DCDSGFILDGYPRTVDQAKSLHAFISNMDCAID-AVIELRV-EDASMFKRIQVRVLEAIASEKSVRSDDKYDVF 147 (201)
Q Consensus 71 ~l~~~-~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~-~vi~L~~-~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i 147 (201)
.+... ...+-.|+|==+.-..|.+ +.. |+ ..|++.. +.+++.+|+.+|. .|+++.+
T Consensus 90 ~I~~~~~~G~~vildidvqGa~~lk---~~~------~~~~~IFI~Pps~e~L~~RL~~Rg------------~es~~~I 148 (208)
T PRK00300 90 PVEEALAAGKDVLLEIDWQGAQQVK---KKM------PDAVSIFILPPSLEELERRLRGRG------------TDSEEVI 148 (208)
T ss_pred HHHHHHHCCCCEEEECCHHHHHHHH---HHC------CCCEEEEEECCCHHHHHHHHHHCC------------CCCHHHH
T ss_conf 9999985699879746789999999---859------775799982889999999998638------------9988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999997569999999679799993899889999999999999
Q gi|254780240|r 148 LKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 148 ~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
.+||+....+.. |...-.+..||. +.++.++++.++|..
T Consensus 149 ~~Rl~~A~~El~-----~~~~fD~vIiNd--dl~~a~~~l~~ii~~ 187 (208)
T PRK00300 149 ARRLEAAKEEIA-----HASEYDYVIVND--DLETALEELKAIIRA 187 (208)
T ss_pred HHHHHHHHHHHH-----HHHCCCEEEECC--CHHHHHHHHHHHHHH
T ss_conf 999999999998-----885599999899--999999999999999
No 77
>PRK05416 hypothetical protein; Provisional
Probab=98.40 E-value=2.4e-05 Score=54.25 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=85.3
Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 96999-87889996789999999718948957899999996001456666776413445541035665554202322253
Q gi|254780240|r 1 MRIIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 1 m~I~i-~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
|+++| .|..||||+|-.+.| |-+||-+|.. +|-.++..++..........+
T Consensus 6 m~lviVTGlSGAGKStAl~~L-EDlGy~ciDN---------------------------lP~~Ll~~l~~~~~~~~~~~~ 57 (292)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL-EDLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGIDK 57 (292)
T ss_pred EEEEEEECCCCCCHHHHHHHH-HHCCCEEECC---------------------------CCHHHHHHHHHHHHCCCCCCC
T ss_conf 689999689978799999999-8179447868---------------------------888999999999724788770
Q ss_pred -EEEECCCHHHHH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -178638011124---5788876665312522210355542212566423-31123233345565678989999999999
Q gi|254780240|r 80 -GFILDGYPRTVD---QAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ-VRVLEAIASEKSVRSDDKYDVFLKRIENY 154 (201)
Q Consensus 80 -g~ilDGFPRt~~---Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~-~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y 154 (201)
.+.+|- |+.. +...+.+.+...+..+ .+++|+|+++++++|.. .|+.+|..+... .-.|+|++ =
T Consensus 58 lAv~iD~--R~~~~~~~l~~~~~~l~~~~~~~-~ilFLdA~~~~LlrRy~eTRR~HPL~~~~~----~L~eaI~~----E 126 (292)
T PRK05416 58 VAVVIDV--RSRPFFLDLPEALDELRERGIDV-RVLFLDASDEVLIRRYSETRRRHPLSGDGG----SLLEAIEL----E 126 (292)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHHHCCCCE-EEEEEECCHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHH----H
T ss_conf 6999824--66544778999999998579955-999997886999998875068999888999----98999999----9
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHHHH
Q ss_conf 997569999999679799993899-88999999999999
Q gi|254780240|r 155 RKTILPLSSYYRDMGCLYIIDGML-DMDEVSRSIDSLLV 192 (201)
Q Consensus 155 ~~~~~pv~~~y~~~~~l~~Idg~~-~~~eV~~~I~~~l~ 192 (201)
++...|+.+. . -..||.+. ++.+..+.|...+.
T Consensus 127 r~~L~~ir~~----A-d~vIDTS~l~~~~Lr~~i~~~~~ 160 (292)
T PRK05416 127 RELLAPLRER----A-DLVIDTSELSVHQLRERIRERFG 160 (292)
T ss_pred HHHHHHHHHH----C-CEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9999999974----0-28974799999999999999865
No 78
>PRK06696 uridine kinase; Validated
Probab=98.39 E-value=7.8e-07 Score=63.58 Aligned_cols=144 Identities=21% Similarity=0.167 Sum_probs=73.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---C--CCEECHHHHHHH-----HHHHHHH---------HHHHHHHHH---HCC---
Q ss_conf 69998788999678999999971---8--948957899999-----9960014---------566667764---134---
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL---N--VPQLSTGDMLRA-----EVDRNTL---------LGKQVKGSM---ESG--- 56 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~---~--~~~is~gdllR~-----~~~~~s~---------~g~~i~~~l---~~G--- 56 (201)
.|-|-|+|||||||.|..|++.+ | ..++++.+.++. +....+. ++...+..+ ..|
T Consensus 28 ~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g~~~~~~~~~d~~D~~~l~~~ll~pL~~~~~~ 107 (227)
T PRK06696 28 RVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRGRESARGYYEDAYDYTAFRELLLKPLGPNGDR 107 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99977899878799999999999746994899715443473777765166774434754105899999998663158980
Q ss_pred CCCCC---HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 45541---035665554202322253178638011124578887666531252221035554221256642331123233
Q gi|254780240|r 57 SLISD---AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133 (201)
Q Consensus 57 ~lvpd---~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~ 133 (201)
...|. ...-.-+.......+...-+|++|- .-+-..| .. -.|+.|+|+++.++...|...|.....+
T Consensus 108 ~~~~~~~D~~td~~~~~~~~~~p~~~VlIveG~---~ll~~el----r~---~~D~~v~ld~~~~~~~~R~~~Rd~~~~g 177 (227)
T PRK06696 108 QYRTASHDLKTDIPVHNEPLMAAPNAVLIVDGT---FLLRKEL----RD---LWDYKIFLDTDFEESRRRGAKRDTEAFG 177 (227)
T ss_pred EEEECCCCCCCCCCCCCCCEECCCCCEEEEECH---HHCCHHH----HH---CCCEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 584112463357545687164699808999255---6466557----73---0748999979999998876653254416
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3455656789899999999999975699999996
Q gi|254780240|r 134 SEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRD 167 (201)
Q Consensus 134 ~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~ 167 (201)
+ ++|+ .+.|.+.-.|.-+.|-+
T Consensus 178 ~--------~~~~----~~~~~~ry~pa~~~Y~~ 199 (227)
T PRK06696 178 S--------YEEA----EKMYLERYHPACKLYID 199 (227)
T ss_pred C--------CHHH----HHHHHHHHHHHHHHHHC
T ss_conf 8--------3789----99999876389999864
No 79
>KOG3354 consensus
Probab=98.36 E-value=1.4e-06 Score=61.96 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=85.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH---HHHCC-CCCC
Q ss_conf 9998788999678999999971894895789999999600145666677641344554103566555---42023-2225
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVC---DRIRL-PDCD 78 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~---~~l~~-~~~~ 78 (201)
|+++|+.||||+|+++.|++++++.++...|+- ...=.+-|.+|-...|+--..++. ..+.+ ....
T Consensus 15 i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H----------p~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~ 84 (191)
T KOG3354 15 IVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH----------PPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASG 84 (191)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC----------CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999835887744599999998588624555579----------8788998836998885321179999999999876327
Q ss_pred CEEEEC--CCHHHHHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 317863--80111245788876665-----31252221035554221256642331123233345565678989999999
Q gi|254780240|r 79 SGFILD--GYPRTVDQAKSLHAFIS-----NMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRI 151 (201)
Q Consensus 79 ~g~ilD--GFPRt~~Qa~~l~~~l~-----~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl 151 (201)
+|+||- ..-|++.. .|-.-+. ......-.+++|.++.+++.+|+..|..+=-. .+.+.-.|
T Consensus 85 q~vVlACSaLKk~YRd--ILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp----------~~lleSQf 152 (191)
T KOG3354 85 QGVVLACSALKKKYRD--ILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMP----------ADLLESQF 152 (191)
T ss_pred CEEEEEHHHHHHHHHH--HHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCC----------HHHHHHHH
T ss_conf 8189972888899999--99732114786678640588863304299999998406666688----------78999888
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHH
Q ss_conf 99999756999999967979999389-988999999999999
Q gi|254780240|r 152 ENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLV 192 (201)
Q Consensus 152 ~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~ 192 (201)
..-..|-. +...+..|+.. ++++++...|.+.+.
T Consensus 153 ---~~LE~p~~----~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354 153 ---ATLEAPDA----DEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred ---HHCCCCCC----CCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf ---75269999----824668886034789999999999998
No 80
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=6.1e-06 Score=57.96 Aligned_cols=166 Identities=20% Similarity=0.239 Sum_probs=87.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHH---HHHH----HHHHHHHHHHCCCCCCCHHHH-H---HHHHH
Q ss_conf 99987889996789999999718948957899999996---0014----566667764134455410356-6---55542
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVD---RNTL----LGKQVKGSMESGSLISDAIVN-Q---VVCDR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~---~~s~----~g~~i~~~l~~G~lvpd~ii~-~---li~~~ 71 (201)
++|.||.|+||+|+++.|-+..++ ++|+..-=|.-.. .|-+ .-.+-++++++|+++-=-.+. . --...
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~~l-~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ 85 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREP 85 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCE-EEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
T ss_conf 999899888889999999863493-7999852679999875780247577999999875687478877719732486889
Q ss_pred HCCCC-CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 02322-2531786380111245788876665312522210-355542-21256642331123233345565678989999
Q gi|254780240|r 72 IRLPD-CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAV-IELRVE-DASMFKRIQVRVLEAIASEKSVRSDDKYDVFL 148 (201)
Q Consensus 72 l~~~~-~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~v-i~L~~~-~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~ 148 (201)
+.+.. ...-+|||= ...=|...... .|+.+ |++.+| .+.+.+|+.+| -.|++|+|+
T Consensus 86 ve~~~~~G~~vildI---d~qGa~qvk~~------~p~~v~IFi~pPs~eeL~~RL~~R------------gtds~e~I~ 144 (191)
T COG0194 86 VEQALAEGKDVILDI---DVQGALQVKKK------MPNAVSIFILPPSLEELERRLKGR------------GTDSEEVIA 144 (191)
T ss_pred HHHHHHCCCEEEEEE---EHHHHHHHHHH------CCCEEEEEECCCCHHHHHHHHHCC------------CCCCHHHHH
T ss_conf 999986699089998---53999999974------999699997599999999999715------------999799999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999975699999996797999938998899999999999999987
Q gi|254780240|r 149 KRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKK 197 (201)
Q Consensus 149 ~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~k~ 197 (201)
+||...+.+.....+ -.+..||- +.+..+..+.+++..-+.+
T Consensus 145 ~Rl~~a~~Ei~~~~~-----fdyvivNd--d~e~a~~~l~~ii~aer~~ 186 (191)
T COG0194 145 RRLENAKKEISHADE-----FDYVIVND--DLEKALEELKSIILAERLR 186 (191)
T ss_pred HHHHHHHHHHHHHHH-----CCEEEECC--CHHHHHHHHHHHHHHHHHH
T ss_conf 999999999988875-----99999895--4999999999999998877
No 81
>PRK05480 uridine kinase; Provisional
Probab=98.32 E-value=1.2e-05 Score=56.11 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=83.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC---CEECHHHHHHH-------HHHH---HHH-------HHHHHHHHHHCCCCCC--
Q ss_conf 999878899967899999997189---48957899999-------9960---014-------5666677641344554--
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV---PQLSTGDMLRA-------EVDR---NTL-------LGKQVKGSMESGSLIS-- 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~---~~is~gdllR~-------~~~~---~s~-------~g~~i~~~l~~G~lvp-- 60 (201)
|-|.|++||||||.|+.|++.++- ..||+-+..+. +... +.+ +...++ .+.+|+.|.
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~~~~~~~e~~~~nfD~P~a~d~~ll~~~L~-~L~~G~~v~~P 87 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQSHLSMEERVKTNYDHPDAFDHDLLIEHLK-ALKAGKAIEIP 87 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCCCC
T ss_conf 99989997789999999999808687599955441247340788681236878826766999999999-99749987567
Q ss_pred --CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf --103566555420232225317863801112457888766653125222103555422125664233112323334556
Q gi|254780240|r 61 --DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSV 138 (201)
Q Consensus 61 --d~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~ 138 (201)
|...-.-..+. .......-+|++|.=-- + +..+.. ..|+.|++++|.++.+.|-..|..... +
T Consensus 88 ~Ydf~t~~r~~~~-~~i~~~~iiIvEGi~~l--~----~~~lr~---~~DlkIfid~~~d~rl~RRi~RD~~eR-----G 152 (209)
T PRK05480 88 VYDYTEHTRSKET-IHVEPKDVIILEGILLL--E----DERLRD---LMDIKIFVDTPLDIRLIRRLKRDVNER-----G 152 (209)
T ss_pred CCCCCCCCCCCCE-EEECCCCEEEEECHHHC--C----CHHHHH---HHCEEEEEECCHHHHHHHHHHHHHHHH-----C
T ss_conf 5445566557863-89669876999345640--6----787886---526579996677789999999789997-----8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 567898999999999999756999999----96797999938998899999999999999
Q gi|254780240|r 139 RSDDKYDVFLKRIENYRKTILPLSSYY----RDMGCLYIIDGMLDMDEVSRSIDSLLVSV 194 (201)
Q Consensus 139 R~DD~~e~i~~Rl~~y~~~~~pv~~~y----~~~~~l~~Idg~~~~~eV~~~I~~~l~~~ 194 (201)
| +.|.+ ++.|.+...|.-+-| ++.- =..|.....-+.-..-|...|..+
T Consensus 153 r---~~e~v---i~q~~~~v~p~~~~yI~P~k~~A-DlII~~~~~~~va~~~i~~~i~~~ 205 (209)
T PRK05480 153 R---SLESV---INQYLSTVRPMHLQFIEPSKRYA-DIIIPEGGKNRVAIDILKAKIRQL 205 (209)
T ss_pred C---CHHHH---HHHHHHHHHHHHHHHCHHHHHCC-EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8---99999---99999976576997684527424-089889996459999999999999
No 82
>PRK06762 hypothetical protein; Provisional
Probab=98.30 E-value=1.1e-05 Score=56.47 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=92.3
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCC
Q ss_conf 6999-878899967899999997189-489578999999960014566667764134455410356655542023-2225
Q gi|254780240|r 2 RIIF-LGPPGSGKGTQACRLSQKLNV-PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRL-PDCD 78 (201)
Q Consensus 2 ~I~i-~G~PGsGK~T~a~~la~~~~~-~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~-~~~~ 78 (201)
++++ =|..||||+|.|+.|.++||- +-+-.-|.+|-++-..-+ .|...-+.|+..-.+- .+..
T Consensus 3 ~LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQD~vRR~mLr~kD--------------~~g~~~i~Li~~~~~yg~~~~ 68 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD--------------GPGNLSIDLIEQLVRYGLQHC 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCC--------------CCCCCCHHHHHHHHHHHHHCC
T ss_conf 289997888888789999999986888578537589999840557--------------799978689999999998569
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 31786380111245788876665312522210355542212566423311232333455656789899999999999975
Q gi|254780240|r 79 SGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTI 158 (201)
Q Consensus 79 ~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~ 158 (201)
.-+|++|.=.+..-...|..+...+. ...++.++|+|-++-+.|-..|-....- .++.
T Consensus 69 ~~VIlEGIL~a~~Yg~ml~~l~~~~~-~~~~~YY~Di~FeETlrRH~tr~~~~~F---------g~~~------------ 126 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLFG-GNAYTYYFDLSFEETVRRHNTRPKSHEF---------GEDD------------ 126 (166)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEEEECCHHHHHHHHHCCCCCCCC---------CHHH------------
T ss_conf 98999741004489999999998657-8669999948779999987467765676---------9899------------
Q ss_pred HHHHHHHHHCCCE-----EEECCCCCHHHHHHHHHHHHH
Q ss_conf 6999999967979-----999389988999999999999
Q gi|254780240|r 159 LPLSSYYRDMGCL-----YIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 159 ~pv~~~y~~~~~l-----~~Idg~~~~~eV~~~I~~~l~ 192 (201)
+.+.|.....+ ..|..+.+.+++++.|.+-+.
T Consensus 127 --mr~W~~~~D~L~~~~E~~~~~~~tl~~~v~~Il~di~ 163 (166)
T PRK06762 127 --MRRWWLPHDTLGVEGETIFTDELSLNDIFDAILTDIG 163 (166)
T ss_pred --HHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf --9977555455599986785776788999999999743
No 83
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=7.2e-06 Score=57.52 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=91.3
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHCCCC-C-CCE
Q ss_conf 87889996789999999718948957899999996001456666776413445541035---665554202322-2-531
Q gi|254780240|r 6 LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIV---NQVVCDRIRLPD-C-DSG 80 (201)
Q Consensus 6 ~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii---~~li~~~l~~~~-~-~~g 80 (201)
||..||||+|++..||+++|..+|.--||= -..=-+-|.+|....|+-- .+-+..++.+.. . ..+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlH----------p~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLH----------PPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEECCCCCC----------CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 987765777999999998098233356569----------9889998727998984112479999999999864279816
Q ss_pred EEEC-CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7863-801112457888766653125222103555422125664233112323334556567898999999999999756
Q gi|254780240|r 81 FILD-GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTIL 159 (201)
Q Consensus 81 ~ilD-GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~ 159 (201)
+|.- -.-|.+. ..+...... -.+++|+.+.+++.+|+..|..+=- ..+.+.- .|..-..
T Consensus 71 vi~CSALKr~YR------D~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM----------~~~ll~S---Qfa~LE~ 130 (161)
T COG3265 71 VIACSALKRSYR------DLLREANPG-LRFVYLDGDFDLILERMKARKGHFM----------PASLLDS---QFATLEE 130 (161)
T ss_pred EEECHHHHHHHH------HHHHCCCCC-EEEEEECCCHHHHHHHHHHCCCCCC----------CHHHHHH---HHHHHCC
T ss_conf 996278878899------998545997-3899963889999999876056778----------8899998---9998358
Q ss_pred HHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999679799993899889999999999999
Q gi|254780240|r 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 160 pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
|- ....++.||.++++++|.+++..+|..
T Consensus 131 P~-----~de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 131 PG-----ADEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred CC-----CCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 99-----998879864899989999999999861
No 84
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.25 E-value=8.1e-06 Score=57.19 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=88.0
Q ss_pred E-EEEECCCCCCHHHHHHHHHHHHCCC-EECHHHHHHHHHH---HHHH----HHHHHHHHHHCCCCCCCHHH----HHHH
Q ss_conf 6-9998788999678999999971894-8957899999996---0014----56666776413445541035----6655
Q gi|254780240|r 2 R-IIFLGPPGSGKGTQACRLSQKLNVP-QLSTGDMLRAEVD---RNTL----LGKQVKGSMESGSLISDAIV----NQVV 68 (201)
Q Consensus 2 ~-I~i~G~PGsGK~T~a~~la~~~~~~-~is~gdllR~~~~---~~s~----~g~~i~~~l~~G~lvpd~ii----~~li 68 (201)
| |+++||+||||+|+.+.|.+++.-. +.++..--|.... .+-+ .-....+.+++|.++.-... -...
T Consensus 3 r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCH
T ss_conf 77999999999999999999863964505778767279988999996369971799999987274178887478775410
Q ss_pred HHHHCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 5420232-2253178638011124578887666531252221035554-2212566423311232333455656789899
Q gi|254780240|r 69 CDRIRLP-DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV-EDASMFKRIQVRVLEAIASEKSVRSDDKYDV 146 (201)
Q Consensus 69 ~~~l~~~-~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~-~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~ 146 (201)
.+.+... ...+-.|+|.=|.-..|.+.. ...+ .+|++.. +.+.+.+|+..|. +++++.
T Consensus 83 ~~~I~~~~~~g~~~ildi~~~g~~~l~~~-------~~~~-~~Ifi~pps~e~L~~RL~~Rg------------~~~~~~ 142 (184)
T smart00072 83 KETIRQVAEQGKHCLLDIDPQGVKQLRKA-------QLYP-IVIFIAPPSSEELERRLRGRG------------TETAER 142 (184)
T ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHH-------CCCC-EEEEEECCCHHHHHHHHHCCC------------CCCHHH
T ss_conf 67899987269869999629999999985-------8880-799993899999999997169------------999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999997569999999679799993899889999999999999
Q gi|254780240|r 147 FLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 147 i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
+.+|+..+..+.. ++. .-.++.+|. +.++.+.++..+|..
T Consensus 143 i~~Rl~~a~~e~~----~~~-~fd~vIvN~--dl~~a~~~l~~iI~~ 182 (184)
T smart00072 143 IQKRLAAAQKEAQ----EYH-LFDYVIVND--DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHHHHHHHHHH----HHH-HCCEEEECC--CHHHHHHHHHHHHHH
T ss_conf 9999999999996----473-399999898--999999999999985
No 85
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=98.23 E-value=8.5e-06 Score=57.07 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=83.1
Q ss_pred CEE-EEECCCCCCHHHHHHHHHHHHCC-CEECHH---HHHHH-HHHHHHH---HHHHHHHHHHCCCCCCCHHH----HHH
Q ss_conf 969-99878899967899999997189-489578---99999-9960014---56666776413445541035----665
Q gi|254780240|r 1 MRI-IFLGPPGSGKGTQACRLSQKLNV-PQLSTG---DMLRA-EVDRNTL---LGKQVKGSMESGSLISDAIV----NQV 67 (201)
Q Consensus 1 m~I-~i~G~PGsGK~T~a~~la~~~~~-~~is~g---dllR~-~~~~~s~---~g~~i~~~l~~G~lvpd~ii----~~l 67 (201)
+|+ +|+||+||||+|+++.|.+.+.- -.+++. --.|. |++.... .-....+.+++|.++--... ...
T Consensus 1 ~klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 80 (182)
T pfam00625 1 RRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAEFNGNYYGT 80 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98699989899999999999998486673445765547999878789657996589999987543777626407972564
Q ss_pred HHHHHCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 55420232-22531786380111245788876665312522210355542-21256642331123233345565678989
Q gi|254780240|r 68 VCDRIRLP-DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE-DASMFKRIQVRVLEAIASEKSVRSDDKYD 145 (201)
Q Consensus 68 i~~~l~~~-~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~-~~~~~~R~~~R~~~~~~~~~~~R~DD~~e 145 (201)
..+.+... ...+..|+|.=|.-..|.+. . ...+ .+|++..| .+++.+|+.+| -+++++
T Consensus 81 ~~~~I~~~~~~g~~vvl~id~~g~~~lk~---~----~~~~-~~IfI~pps~~~L~~RL~~R------------g~~~~~ 140 (182)
T pfam00625 81 SKEAIEQIAESGKICILDVDIQGVKQLRK---A----ELSP-ISVFIKPPSLKVLQRRLKGR------------GTEQEE 140 (182)
T ss_pred CHHHHHHHHHCCCEEEEEECHHHHHHHHH---H----CCCC-EEEEEECCCHHHHHHHHHHC------------CCCCHH
T ss_conf 02777999867996999972899999987---4----9574-89999387999999999814------------888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999997569999999679799993899889999999999999
Q gi|254780240|r 146 VFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 146 ~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
.+.+|+..+..+.. ++. .-.++.+|- +.++.++++.++|.+
T Consensus 141 ~i~~Rl~~a~~e~~----~~~-~fD~vIvNd--dle~a~~~l~~ii~a 181 (182)
T pfam00625 141 KINKRMEAAEQEFQ----HYA-EFDYIIVND--DLDEAYKKLKEILEA 181 (182)
T ss_pred HHHHHHHHHHHHHH----HHH-HCCEEEECC--CHHHHHHHHHHHHHC
T ss_conf 99999999999973----486-199999898--999999999999973
No 86
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=7.1e-06 Score=57.54 Aligned_cols=109 Identities=27% Similarity=0.284 Sum_probs=53.5
Q ss_pred CE-EEEECCCCCCHHHHHHHHHHHH-----CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 96-9998788999678999999971-----89489578999999960014566667764134455410356655542023
Q gi|254780240|r 1 MR-IIFLGPPGSGKGTQACRLSQKL-----NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRL 74 (201)
Q Consensus 1 m~-I~i~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~ 74 (201)
|. |++.|+|||||+|-|+.||+.+ ..+|++. |-++-.. .+-.++..-+.|... -++-+..++..+++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k-dy~~~i~-~DEslpi~ke~yres----~~ks~~rlldSalk- 73 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK-DYLRGIL-WDESLPILKEVYRES----FLKSVERLLDSALK- 73 (261)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCH-HHHHHEE-CCCCCCHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_conf 9569982699988017899999999972001121320-1454123-313240379999999----98889999999863-
Q ss_pred CCCCCEEEE-C------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 222531786-3------8011124578887666531252221035554221256642331
Q gi|254780240|r 75 PDCDSGFIL-D------GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVR 127 (201)
Q Consensus 75 ~~~~~g~il-D------GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R 127 (201)
+-||| | ||-|.+. ....+. -.+-+||++.||.+++.+|=..|
T Consensus 74 ----n~~VIvDdtNYyksmRrqL~------ceak~~-~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 ----NYLVIVDDTNYYKSMRRQLA------CEAKER-KTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred ----CEEEEEECCCHHHHHHHHHH------HHHHHC-CCCEEEEEECCCHHHHHHHHCCC
T ss_conf ----64999706328889999999------999863-78659999726889998860247
No 87
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=98.18 E-value=7.9e-06 Score=57.26 Aligned_cols=146 Identities=18% Similarity=0.169 Sum_probs=69.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC-------CEECHH-------HHHHHHH--HHHHHH---HHHHHHH---HHCCCC--
Q ss_conf 999878899967899999997189-------489578-------9999999--600145---6666776---413445--
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV-------PQLSTG-------DMLRAEV--DRNTLL---GKQVKGS---MESGSL-- 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~-------~~is~g-------dllR~~~--~~~s~~---g~~i~~~---l~~G~l-- 58 (201)
|-|-|||||||||.|..|++.++- ..++|- .|-+... .++.+. .....+. +.+|.-
T Consensus 37 IgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~~~~~L~~~~~~~rkGaP~TFD~~~l~~~L~~Lk~~~~~v 116 (230)
T PRK09270 37 VGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHLDNAVLDARGLRARKGAPETFDVAGLAELLRRLREGDCEV 116 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 99989998899999999999986237998579973653345725554354743379910216988999999985689717
Q ss_pred -CC--CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -54--103566555420232225317863801112457--8887666531252221035554221256642331123233
Q gi|254780240|r 59 -IS--DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQA--KSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133 (201)
Q Consensus 59 -vp--d~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa--~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~ 133 (201)
+| |..+-.-+...+.-.+..+-+|++| |+-+. ..|..+ .. -.|..++++++++++.+|+..|....
T Consensus 117 ~~P~yD~~~~d~~~~~~~i~~~~~IVIvEG---nyLLld~~~W~~l-~~---~~D~~ifvd~~~~~~~~Rli~R~~~~-- 187 (230)
T PRK09270 117 YWPVFDRQLEDPVADAIVVGPTARLVIVEG---NYLLLDDEPWRRL-AG---FFDFSIFLDAPAEVLRERLVARKLAG-- 187 (230)
T ss_pred EECCCCCCCCCCCCCCEEECCCCCEEEEEC---EEEECCCCCHHHH-HH---HHCEEEEEECCHHHHHHHHHHHHHHC--
T ss_conf 521343224577889536669986899934---4761378328999-98---63767998489999999999999872--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3455656789899999999999975699999996
Q gi|254780240|r 134 SEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRD 167 (201)
Q Consensus 134 ~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~ 167 (201)
| + ++|...+| |..+-.|-.++...
T Consensus 188 G----~---s~e~a~~r---~~~nD~pN~~~V~~ 211 (230)
T PRK09270 188 G----L---SPEAARAF---YLRNDGPNARLVLE 211 (230)
T ss_pred C----C---CHHHHHHH---HHHCCCCHHHHHHH
T ss_conf 9----9---99999999---97166107999985
No 88
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.17 E-value=2.1e-05 Score=54.60 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=81.6
Q ss_pred EE-EECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHH-HHHHHHHHHHHHC----CCCCCCHHHHHH------HHH
Q ss_conf 99-98788999678999999971894895789999999600-1456666776413----445541035665------554
Q gi|254780240|r 3 II-FLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRN-TLLGKQVKGSMES----GSLISDAIVNQV------VCD 70 (201)
Q Consensus 3 I~-i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~-s~~g~~i~~~l~~----G~lvpd~ii~~l------i~~ 70 (201)
|+ +-|.||+||+|.|..||.++|+.++-..|-+|+.++.- +..-..-....++ |..-.+.++..+ +..
T Consensus 5 iiligG~sGvGKStla~~lA~rlgi~~visTD~IRevlR~~i~~eP~L~~Ssy~A~~~~~~~~~~~ii~Gf~~q~~~V~~ 84 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMP 84 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99985799887899999999974997553434799999986688740033046798870896527899999999999999
Q ss_pred HH----CCC-CCCCEEEECCC---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 20----232-22531786380---11124578887666531252221035554221256642331123233345565678
Q gi|254780240|r 71 RI----RLP-DCDSGFILDGY---PRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDD 142 (201)
Q Consensus 71 ~l----~~~-~~~~g~ilDGF---PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD 142 (201)
.+ ... ......|++|. |.=+. ....+ +. .-+++.+ -+++.-.+|+..|......+.
T Consensus 85 gi~avi~Ra~~eg~slIIEGVHlvP~~i~------~~~~~-~~-~~~~l~i-~dee~H~~Rf~~R~~~~~~~~------- 148 (197)
T PRK12339 85 GINRVIRRALLNGEDLVIESLYFHPPMID------ENRTN-NI-RAFYLYI-RDAELHRSRLADRINYTHKNS------- 148 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECHHHHH------HHHHC-CE-EEEEEEE-CCHHHHHHHHHHHHHHCCCCC-------
T ss_conf 99999999997399779985211778877------88765-95-8999997-888999999999854312677-------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9899999999999975699999996---7979999389988999999999999
Q gi|254780240|r 143 KYDVFLKRIENYRKTILPLSSYYRD---MGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 143 ~~e~i~~Rl~~y~~~~~pv~~~y~~---~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
+ .+||-.|-.+..-+-+|.-+ ...+-.||.. ++++.++.+...+.
T Consensus 149 -p---~~ry~~~f~~IR~Iq~ylv~~A~~~~ipvI~n~-~~d~s~~~i~~~i~ 196 (197)
T PRK12339 149 -P---GKRLAEHLPEYRTIMDYSIADARGYNIKVIDTD-NYREARNPLLDPIS 196 (197)
T ss_pred -H---HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC-CHHHHHHHHHHHHH
T ss_conf -1---669999899999999999998887399855377-28999999999840
No 89
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=98.14 E-value=9.4e-05 Score=50.52 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=86.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-ECHH-HHH-HHHHHHHHHHH-----HHHHHHHHCCCC------------CCCH
Q ss_conf 99987889996789999999718948-9578-999-99996001456-----666776413445------------5410
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-LSTG-DML-RAEVDRNTLLG-----KQVKGSMESGSL------------ISDA 62 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-is~g-dll-R~~~~~~s~~g-----~~i~~~l~~G~l------------vpd~ 62 (201)
|+++||.||||-|.-....+++.-.+ +.+- -.+ |.+ +.++|.. .+-...-+.|.+ +|-|
T Consensus 4 i~vvGPSGaGKDtLl~~AR~~l~~~~r~~F~rRvITR~a-~AggEnH~Als~~EF~~~~~~G~FAl~W~AHGL~YGiP~e 82 (183)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPA-DAGGENHDALSTEEFDAREDGGAFALSWQAHGLSYGIPVE 82 (183)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHH
T ss_conf 899707788677899999997048996588312774375-2246676404778999997189818986136743578303
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 35665554202322253178638011124578887666531252221035554221256642331123233345565678
Q gi|254780240|r 63 IVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDD 142 (201)
Q Consensus 63 ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD 142 (201)
|= +.|.+ ..-+|+.|==-.+++|. .-+ .. =+++.|+++.+++-+|+..|..+
T Consensus 83 id-----~wL~~---G~~Vv~NGSRa~Lp~ar------~rY-p~-L~~V~Ita~~dVLa~RL~~RgRE------------ 134 (183)
T TIGR02322 83 ID-----QWLEA---GDVVVVNGSRAVLPEAR------QRY-PN-LLVVNITASPDVLAQRLAARGRE------------ 134 (183)
T ss_pred HH-----HHHHC---CCEEEEECHHHHHHHHH------HHH-HC-CEEEEEECCHHHHHHHHHHHCCC------------
T ss_conf 78-----78754---99899975288999998------743-24-60278745812899999975898------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 989999999999997569999999679799993899889999999999999
Q gi|254780240|r 143 KYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 143 ~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
+.+.|.+||.--...+-.+ .-+..-+..||-+++.+.--+.+..+|..
T Consensus 135 ~~~~I~~RL~Rs~~~~~dl---l~~~~dv~~i~NsG~~~~ag~~L~~ll~~ 182 (183)
T TIGR02322 135 SAEEIEERLARSARFAGDL---LLEPADVTTIDNSGSLEVAGETLLRLLRK 182 (183)
T ss_pred CHHHHHHHHHHHHHHCCHH---HCCCCCEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 9889999988775311022---00598727984680278999999999853
No 90
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.14 E-value=2.6e-05 Score=54.01 Aligned_cols=104 Identities=24% Similarity=0.290 Sum_probs=59.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---C--CCEECHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9998788999678999999971---8--9489578999999960-01456666776413445541035665554202322
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---N--VPQLSTGDMLRAEVDR-NTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~--~~~is~gdllR~~~~~-~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~ 76 (201)
|+++|-|||||+|.|+.|++++ | ..|++ .|++|+.... ++..-+.++.. ....+...+...
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~-~d~~~~~~~~~~~~~Ek~~r~~-----------~~~~v~~~l~~~- 68 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNIILG-TDLIRESFPVWKEKYEEFIRDS-----------TLYLIKTALKNK- 68 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEC-CCCCHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHCCC-
T ss_conf 789678999899999999999998299659965-5200212000336779998999-----------999999984337-
Q ss_pred CCCEEEEC------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 25317863------80111245788876665312522210355542212566423311
Q gi|254780240|r 77 CDSGFILD------GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRV 128 (201)
Q Consensus 77 ~~~g~ilD------GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~ 128 (201)
.-+|+| ||-.- |..+....+ .+.++|+++||.+.+.+|=..|.
T Consensus 69 --~~vI~D~~nYiKg~RYE------L~clAk~~~-t~~c~I~~~~p~e~c~~~N~~R~ 117 (249)
T TIGR03574 69 --YSVIVDDTNYYNSKRRD------LINIAKEYN-KNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred --CEEEECCCCHHHHHHHH------HHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCC
T ss_conf --66997273278899999------999999849-98699997399999999876068
No 91
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.00015 Score=49.34 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=80.6
Q ss_pred EEEE-CCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHH-H-HH-----------HHH----------HHHHHHCCCC
Q ss_conf 9998-788999678999999971894895789999999600-1-45-----------666----------6776413445
Q gi|254780240|r 3 IIFL-GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRN-T-LL-----------GKQ----------VKGSMESGSL 58 (201)
Q Consensus 3 I~i~-G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~-s-~~-----------g~~----------i~~~l~~G~l 58 (201)
|+++ |+||.||+|+|.-||..+|+.++-.+|-+|+-+..= + ++ ++. ++-+.++-+.
T Consensus 91 IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~ 170 (299)
T COG2074 91 IILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASA 170 (299)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99961788777257999999972986100424799999973797745535675779999836899996131317877679
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEECCC---HHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCC
Q ss_conf 5410356655542023222531786380---11124578887666531252221035554-2212566423311232333
Q gi|254780240|r 59 ISDAIVNQVVCDRIRLPDCDSGFILDGY---PRTVDQAKSLHAFISNMDCAIDAVIELRV-EDASMFKRIQVRVLEAIAS 134 (201)
Q Consensus 59 vpd~ii~~li~~~l~~~~~~~g~ilDGF---PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~-~~~~~~~R~~~R~~~~~~~ 134 (201)
|..- +..++..++.. ....||.|. |.-+... .+ . .-.+.++|-+ +++.-..|+-.|....-..
T Consensus 171 V~~G-I~~VI~RAi~e---G~~lIIEGvHlVPg~i~~~-----~~-~---~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~ 237 (299)
T COG2074 171 VMVG-IEAVIERAIEE---GEDLIIEGVHLVPGLIKEE-----AL-G---NNVFMFMLYIADEELHRERFYDRIRYTHAS 237 (299)
T ss_pred HHHH-HHHHHHHHHHC---CCCEEEEEEEECCCCCCHH-----HH-C---CCEEEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 9988-99999999853---7535887421150021676-----61-3---551789998388789999999988887605
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 4556567898999999999999756999999----9679799993899889999999999999
Q gi|254780240|r 135 EKSVRSDDKYDVFLKRIENYRKTILPLSSYY----RDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 135 ~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y----~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
|+ ..|+-.|-.+..-+-+|. ++.| +-.||.+ ++++..+.|+..+..
T Consensus 238 ----rp-------~~Ryl~yf~EiR~I~Dyl~~~Are~g-VPvI~n~-di~etv~~il~~i~~ 287 (299)
T COG2074 238 ----RP-------GGRYLEYFKEIRTIHDYLVERAREHG-VPVIEND-DIDETVDRILEDIRK 287 (299)
T ss_pred ----CC-------HHHHHHHHHHHHHHHHHHHHHHHHCC-CCEECCC-CHHHHHHHHHHHHHH
T ss_conf ----96-------56799999999999999999888659-9811253-199999999999999
No 92
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.12 E-value=9.8e-06 Score=56.67 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=54.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998788999678999999971-----89489578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL-----NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
|+|.|.|||||||+|+.|.+++ ...+|. ||-+|+.+.++..+.. ++...+-.. +..+. ..+....
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lD-GD~iR~~l~~~lgys~--~~R~~n~~r-----~~~la-k~l~~qg- 71 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVRHGLNKDLGFSR--EDREENIRR-----IAEVA-KLLADAG- 71 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHHHCCCCCCCH--HHHHHHHHH-----HHHHH-HHHHHCC-
T ss_conf 898799999999999999999998699759977-4889977365559887--889999999-----99999-9998379-
Q ss_pred CCEEEE---CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 531786---3801112457888766653125222103555422125664
Q gi|254780240|r 78 DSGFIL---DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 78 ~~g~il---DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
-.+|+ --|+...+.+... +. ...-+-|+++||-+++.+|
T Consensus 72 -~~VIvs~isp~~~~R~~~r~~---i~---~~~y~eIyl~~~le~~~~R 113 (149)
T cd02027 72 -LIVIAAFISPYREDREAARKI---IG---GGDFLEVFVDTPLEVCEQR 113 (149)
T ss_pred -CEEEEECCCCCHHHHHHHHHH---CC---CCCEEEEEECCCHHHHHHC
T ss_conf -827884167889999999987---47---7766999971878999873
No 93
>COG0645 Predicted kinase [General function prediction only]
Probab=98.12 E-value=1.5e-05 Score=55.49 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=66.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHCCCCCCC
Q ss_conf 9998788999678999999971894895789999999600145666677641344554---1035665554202322253
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS---DAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvp---d~ii~~li~~~l~~~~~~~ 79 (201)
+++.|-|||||+|.|..|++.+|-.+|++ |..|+.+..-...-.. ..|-.-| +..--.++.....-.....
T Consensus 4 ~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g~p~~~r~-----~~g~ys~~~~~~vy~~l~~~A~l~l~~G~ 77 (170)
T COG0645 4 VLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFGVPEETRG-----PAGLYSPAATAAVYDELLGRAELLLSSGH 77 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEH-HHHHHHHCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99725888658688789885348668741-7899872388610148-----87887678899999999988999996799
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 178638011124578887666531252221035554221256642331123
Q gi|254780240|r 80 GFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 80 g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
.+|+|+-=-...+-..........+.+ ...|.+++|.+++..|+..|..+
T Consensus 78 ~VVlDa~~~r~~~R~~~~~~A~~~gv~-~~li~~~ap~~v~~~rl~aR~~d 127 (170)
T COG0645 78 SVVLDATFDRPQERALARALARDVGVA-FVLIRLEAPEEVLRGRLAARKGD 127 (170)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHCCC
T ss_conf 189844337888899999987503885-48887588299999899981799
No 94
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.10 E-value=9.9e-06 Score=56.66 Aligned_cols=150 Identities=20% Similarity=0.225 Sum_probs=70.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC---C--CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99987889996789999999718---9--489578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN---V--PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~---~--~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
|+|.|.|||||||+|..|..++. . .+|. ||-+|+-.... .+.. ++...+... +. -+...+.
T Consensus 10 iW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LD-GD~lR~~~~~~-gfs~--~~R~~n~~r-----~~-~lak~l~---- 75 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYERLKLKYSNVIYLD-GDELREIFGHS-GYDK--ESRIEMALK-----RA-KLAAFLA---- 75 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHHHCCC-CCCH--HHHHHHHHH-----HH-HHHHHHH----
T ss_conf 997899999899999999999997599779988-68999873658-9899--999999999-----99-9999986----
Q ss_pred CCEE-E----ECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCHHHHHHHH
Q ss_conf 5317-8----6380111245788876665312522210355542212566423311232-33345565678989999999
Q gi|254780240|r 78 DSGF-I----LDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEA-IASEKSVRSDDKYDVFLKRI 151 (201)
Q Consensus 78 ~~g~-i----lDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~-~~~~~~~R~DD~~e~i~~Rl 151 (201)
.+|+ | +-=|+...+.+... +.+ -+-|+++||-+++.+|=.+..+.. ..|+.
T Consensus 76 ~~g~~vIvs~isp~~~~R~~~R~~---~~~-----~~EVyv~~ple~~~~RD~KgLY~ka~~g~i--------------- 132 (176)
T PRK05541 76 DQGMIVIVTTISMFNEIYAYNRKH---LPN-----YFEVYLKCDMEELIRRDQKGLYTKALKGEI--------------- 132 (176)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHH---CCC-----CEEEEEECCHHHHHHCCCHHHHHHHHCCCC---------------
T ss_conf 469803675227989999999974---887-----689999489999987385417899875988---------------
Q ss_pred HHHHHHHHHHHHHHHH-CCCEEEECCC-CCHHHHHHHHHHHHHH
Q ss_conf 9999975699999996-7979999389-9889999999999999
Q gi|254780240|r 152 ENYRKTILPLSSYYRD-MGCLYIIDGM-LDMDEVSRSIDSLLVS 193 (201)
Q Consensus 152 ~~y~~~~~pv~~~y~~-~~~l~~Idg~-~~~~eV~~~I~~~l~~ 193 (201)
.+.-.+-.-|+. ...+..++.+ .|+++..++|...|..
T Consensus 133 ----~n~~Gid~pye~P~~~~~i~~t~~~s~~e~~~~Il~~lk~ 172 (176)
T PRK05541 133 ----SNVVGVDIPFDEPKADLVIDNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred ----CCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf ----8961056899998999898799998999999999999997
No 95
>CHL00181 cbbX CbbX; Provisional
Probab=98.10 E-value=4.7e-06 Score=58.70 Aligned_cols=89 Identities=21% Similarity=0.362 Sum_probs=49.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCE--------ECHHHHHHHHHHHHHHHHHHHHHHHHC---CC--------CCC
Q ss_conf 9699987889996789999999718-948--------957899999996001456666776413---44--------554
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN-VPQ--------LSTGDMLRAEVDRNTLLGKQVKGSMES---GS--------LIS 60 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~-~~~--------is~gdllR~~~~~~s~~g~~i~~~l~~---G~--------lvp 60 (201)
++.+|+||||.||||+|+.+++-|. +-. .+-.||+-..+ ...+.+.++.+++ |= |.+
T Consensus 60 ~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~yv---G~Ta~kt~~~i~~a~GGVLfIDEAY~L~~ 136 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQYI---GHTAPKTKEVLKKAMGGVLFIDEAYYLYK 136 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCC---CCCHHHHHHHHHHCCCCEEEEECHHHHCC
T ss_conf 538887899867999999999999986995589589953588416353---52169999999964598799824465357
Q ss_pred -------CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHH
Q ss_conf -------10356655542023222531786380111245
Q gi|254780240|r 61 -------DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQ 92 (201)
Q Consensus 61 -------d~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Q 92 (201)
...++..+.+.|......--+|+-|||+.+++
T Consensus 137 ~~~~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~eM~~ 175 (287)
T CHL00181 137 PDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 889998379999999999870799889998467899999
No 96
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.07 E-value=2.6e-05 Score=54.02 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=71.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCEECHHHHHHH-------HHHH---HHH-------HHHHHHHHHHCCCCCCC-
Q ss_conf 99987889996789999999718---948957899999-------9960---014-------56666776413445541-
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN---VPQLSTGDMLRA-------EVDR---NTL-------LGKQVKGSMESGSLISD- 61 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~-------~~~~---~s~-------~g~~i~~~l~~G~lvpd- 61 (201)
|-|.|++||||||.|+.|++.++ ...||+-+..+. +... +.+ +.+.++ .+.+|+.|.-
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~~~~~~~~~~~~~fd~p~a~d~~~l~~~L~-~L~~g~~i~~p 80 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQ-DLKNGKSVEIP 80 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCCC
T ss_conf 89889998859999999999809998589978888879860438784367878922644999999999-98648976123
Q ss_pred ---HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---03566555420232225317863801112457888766653125222103555422125664233112323334556
Q gi|254780240|r 62 ---AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSV 138 (201)
Q Consensus 62 ---~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~ 138 (201)
...-....+... .....-+|++|.=- -+-+.+ .+ ..|+.|++++|.++.+.|-..|....
T Consensus 81 ~Yd~~t~~r~~~~~~-i~~~~iiIvEGi~~--l~~~~l----r~---~~D~kIfid~~~d~rl~Rri~RD~~e------- 143 (198)
T cd02023 81 VYDFKTHSRLKETVT-VYPADVIILEGILA--LYDKEL----RD---LMDLKIFVDTDADVRLIRRIERDIVE------- 143 (198)
T ss_pred CEECCCCCCCCCCEE-ECCCCEEEEECHHH--CCCHHH----HH---HHHCEEEEECCHHHHHHHHHHHHHHH-------
T ss_conf 100345754677279-65886599825343--068888----86---74023786178999999999876988-------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 567898999999999999756999999
Q gi|254780240|r 139 RSDDKYDVFLKRIENYRKTILPLSSYY 165 (201)
Q Consensus 139 R~DD~~e~i~~Rl~~y~~~~~pv~~~y 165 (201)
|-. +++.+.+ .|.....|.-+-|
T Consensus 144 Rg~-~~~~v~~---~~~~~v~p~~~~~ 166 (198)
T cd02023 144 RGR-DLESVIN---QYLKFVKPMHEQF 166 (198)
T ss_pred HCC-CHHHHHH---HHHHHHHHHHHHH
T ss_conf 589-9999999---9998607879986
No 97
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=98.07 E-value=0.00026 Score=47.79 Aligned_cols=146 Identities=14% Similarity=0.255 Sum_probs=83.9
Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-CC
Q ss_conf 96999-87889996789999999718948957899999996001456666776413445541035665554202322-25
Q gi|254780240|r 1 MRIIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD-CD 78 (201)
Q Consensus 1 m~I~i-~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~-~~ 78 (201)
|+++| .|..||||+|-.+.| |-+|+-++.. +|-.++.+++..-..... ..
T Consensus 1 m~lviVTGlSGAGKStAl~~L-ED~Gy~cvDN---------------------------lP~~Ll~~~~~~~~~~~~~~~ 52 (284)
T pfam03668 1 IDLVIITGRSGAGKSVALRAL-EDLGYYCVDN---------------------------LPPQLLPRLVDFLLAAGSRIS 52 (284)
T ss_pred CEEEEEECCCCCCHHHHHHHH-HCCCCEEECC---------------------------CCHHHHHHHHHHHHHCCCCCC
T ss_conf 969999579977799999999-8189247758---------------------------899999999999862478765
Q ss_pred -CEEEECC----CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -3178638----0111245788876665312522210355542212566423-311232333455656789899999999
Q gi|254780240|r 79 -SGFILDG----YPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ-VRVLEAIASEKSVRSDDKYDVFLKRIE 152 (201)
Q Consensus 79 -~g~ilDG----FPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~-~R~~~~~~~~~~~R~DD~~e~i~~Rl~ 152 (201)
-.+.+|- |.....+ .+.++ ...+..+ .+++|+|++++++.|.. .|+.+|..+.. ...|.|++-
T Consensus 53 ~lAi~iD~R~~~~~~~~~~--~~~~l-~~~~~~~-~ilFLdA~~~~LirRy~eTRR~HPL~~~~-----~~leaI~~E-- 121 (284)
T pfam03668 53 SVAVVMDVRNRPFSGDLDE--QRNEL-ATRAITP-RILFLEADDDTLVRRYSDTRRSHPLSGKQ-----LSLEGIAAE-- 121 (284)
T ss_pred EEEEEEECCCCCCHHHHHH--HHHHH-HHCCCCC-EEEEEECCCHHHHHHHHHCCCCCCCCCCC-----CCHHHHHHH--
T ss_conf 2689996366533376999--99999-8669982-69999788089999888736889988889-----869999999--
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHHHH
Q ss_conf 99997569999999679799993899-88999999999999
Q gi|254780240|r 153 NYRKTILPLSSYYRDMGCLYIIDGML-DMDEVSRSIDSLLV 192 (201)
Q Consensus 153 ~y~~~~~pv~~~y~~~~~l~~Idg~~-~~~eV~~~I~~~l~ 192 (201)
++...|+.+ .. -..||.+. ++.+..+.|...+.
T Consensus 122 --r~~L~~lr~----~A-d~vIDTS~l~~~~Lr~~i~~~~~ 155 (284)
T pfam03668 122 --RRLLEPLRA----RA-DLIIDTSTLSVHGLRESIRRAFG 155 (284)
T ss_pred --HHHHHHHHH----HC-CEEEECCCCCHHHHHHHHHHHHC
T ss_conf --999999996----26-59985689999999999999864
No 98
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.06 E-value=0.00022 Score=48.19 Aligned_cols=147 Identities=17% Similarity=0.278 Sum_probs=80.7
Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf 96999-8788999678999999971894895789999999600145666677641344554103566555420-232225
Q gi|254780240|r 1 MRIIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRI-RLPDCD 78 (201)
Q Consensus 1 m~I~i-~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l-~~~~~~ 78 (201)
|+++| .|-.||||+|-.+-| |-+|+-++.. +|.+++.+++.-.. ......
T Consensus 1 m~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~ 52 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRIT 52 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHH-HHCCEEEECC---------------------------CCHHHHHHHHHHHHHCCCCCC
T ss_conf 946999568887688999999-7458045358---------------------------998899999999763056775
Q ss_pred C-EEEECCCHHHHHHHHHHHHHHH---HH-CCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3-1786380111245788876665---31-2522210355542212566423-311232333455656789899999999
Q gi|254780240|r 79 S-GFILDGYPRTVDQAKSLHAFIS---NM-DCAIDAVIELRVEDASMFKRIQ-VRVLEAIASEKSVRSDDKYDVFLKRIE 152 (201)
Q Consensus 79 ~-g~ilDGFPRt~~Qa~~l~~~l~---~~-~~~~~~vi~L~~~~~~~~~R~~-~R~~~~~~~~~~~R~DD~~e~i~~Rl~ 152 (201)
+ .+++|= |+.+....|.+.+. .. ++.+ .|++|++++++++.|.. .|+.+|...... -.+.| .
T Consensus 53 kvAv~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~-----l~~~I----~ 120 (286)
T COG1660 53 KVAVVIDV--RSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSEDGL-----LLEAI----A 120 (286)
T ss_pred EEEEEEEC--CCCHHHHHHHHHHHHHHHCCCCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCC-----HHHHH----H
T ss_conf 27999961--450317889999999985579872-499997864579988755200288876672-----78999----9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHHH
Q ss_conf 9999756999999967979999389-988999999999999
Q gi|254780240|r 153 NYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLLV 192 (201)
Q Consensus 153 ~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l~ 192 (201)
.=++-..|+.+.- =..||.+ .++.+..+.|...+.
T Consensus 121 ~ERelL~pLk~~A-----~~vIDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 121 KERELLAPLREIA-----DLVIDTSELSVHELRERIRTRFL 156 (286)
T ss_pred HHHHHHHHHHHHH-----HHEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999888788776-----62765566889999999999970
No 99
>PRK12338 hypothetical protein; Provisional
Probab=98.05 E-value=5.1e-05 Score=52.20 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=32.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH
Q ss_conf 999878899967899999997189489578999999960
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR 41 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~ 41 (201)
|++-|+.|+||+|+|..||.++|++++=.-|-+|+.+++
T Consensus 7 ILiGGtSGvGKSTlAseLAsRLgI~tvIsTDsIRevmR~ 45 (320)
T PRK12338 7 ILIGSASGIGKSTIASEVARRLNIKHLIETDFIREVVRG 45 (320)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHH
T ss_conf 997068887688899999985198711033479999998
No 100
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=98.05 E-value=1.1e-05 Score=56.26 Aligned_cols=104 Identities=23% Similarity=0.232 Sum_probs=54.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---C--CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998788999678999999971---8--9489578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---N--VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~--~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
|+|.|.|||||+|+|+.|.+++ + ..+|. ||-+|+....+-.+. .++...+... +.. +...+....
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LD-GD~~R~~l~~dlgys--~~~R~~n~~r-----~~~-lak~l~~~g- 74 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERKLFAQGISVYVLD-GDNVRHGLNKDLGFS--EEDRTENIRR-----IAE-VAKLFADAG- 74 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHCCCCCCCCCC--HHHHHHHHHH-----HHH-HHHHHHCCC-
T ss_conf 998898999999999999999997599779976-887750125777989--8999999999-----999-999984289-
Q ss_pred CCEEE---ECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 53178---63801112457888766653125222103555422125664
Q gi|254780240|r 78 DSGFI---LDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 78 ~~g~i---lDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
--+| +.-|+...+++... +.. ..-+-|+++||.+++.+|
T Consensus 75 -~~VIvs~isp~~~~R~~~r~~---~~~---~~y~EIyv~~~le~~~~R 116 (157)
T pfam01583 75 -LIVITSFISPYRADRDMAREL---HED---GKFIEVFVDTPLEVCEQR 116 (157)
T ss_pred -CEEEEECCCCCHHHHHHHHHH---CCC---CCEEEEEECCCHHHHHHC
T ss_conf -658872157899999999986---478---857999963867887751
No 101
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=97.96 E-value=4.2e-05 Score=52.72 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=90.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----EECHHHHHHHHHHH---------HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9998788999678999999971894-----89578999999960---------014566667764134455410356655
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP-----QLSTGDMLRAEVDR---------NTLLGKQVKGSMESGSLISDAIVNQVV 68 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~-----~is~gdllR~~~~~---------~s~~g~~i~~~l~~G~lvpd~ii~~li 68 (201)
|+++|-|+.|||++|++|+..+++. .+++|+.=|..... +++.+.++++-+.. + ..+-+
T Consensus 16 IvmVGLPARGKS~ia~kl~RYL~W~g~~~kvFn~G~yRR~~~~~~~~~~ffdp~n~~~~~~R~~~a~------~-~l~dl 88 (223)
T pfam01591 16 IVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKAYSNYEFFRPDNTEAMKIREQCAL------A-ALKDV 88 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH------H-HHHHH
T ss_conf 9998999998899999999998656998058426378876318999941138999899999999999------9-99999
Q ss_pred HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHH--
Q ss_conf 542023222531786380111245788876665312522210355542212566423-31123233345565678989--
Q gi|254780240|r 69 CDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ-VRVLEAIASEKSVRSDDKYD-- 145 (201)
Q Consensus 69 ~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~-~R~~~~~~~~~~~R~DD~~e-- 145 (201)
...+.+. ..+--|+|+-=-|.+.-+.+.+.+...+..+ ++|.--|+++.++++=. ......+. +... |.++
T Consensus 89 ~~~l~~~-~G~VaI~DATN~T~~RR~~i~~~~~~~~~~v-lFiEsic~D~~ii~~NI~~~~~~spD---Y~~~-~~e~A~ 162 (223)
T pfam01591 89 LAYLNEE-SGQVAIFDATNTTRERRKNILDFAEENGLKV-FFLESICDDPEIIARNIKLVKFSSPD---YKGK-PPEEAI 162 (223)
T ss_pred HHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCEE-EEEEEECCCHHHHHHHHHHHHHCCCC---CCCC-CHHHHH
T ss_conf 9999858-9829999688768999999999998669749-99999738889999999999845997---4688-999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCC
Q ss_conf -9999999999975699999996-797999938998
Q gi|254780240|r 146 -VFLKRIENYRKTILPLSSYYRD-MGCLYIIDGMLD 179 (201)
Q Consensus 146 -~i~~Rl~~y~~~~~pv~~~y~~-~~~l~~Idg~~~ 179 (201)
-+++|++.|...=+|+-+-.++ ...+..||..+.
T Consensus 163 ~DF~~Ri~~ye~~Yepl~~~~d~~lsyIK~in~g~~ 198 (223)
T pfam01591 163 DDFMKRLECYEKQYEPLDDEHDEDLSYIKVINVGQS 198 (223)
T ss_pred HHHHHHHHHHHCCEECCCCCCCCCCCEEEEEECCCE
T ss_conf 999999997534242388343368756999978988
No 102
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=97.94 E-value=3.9e-05 Score=52.94 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=84.6
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHCCC--EECHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCC--H---HHHHHHHH
Q ss_conf 69998-788999678999999971894--89578999999960---01456666776413445541--0---35665554
Q gi|254780240|r 2 RIIFL-GPPGSGKGTQACRLSQKLNVP--QLSTGDMLRAEVDR---NTLLGKQVKGSMESGSLISD--A---IVNQVVCD 70 (201)
Q Consensus 2 ~I~i~-G~PGsGK~T~a~~la~~~~~~--~is~gdllR~~~~~---~s~~g~~i~~~l~~G~lvpd--~---ii~~li~~ 70 (201)
+|||+ |++-|||||+|+-|...+.-+ |+++-+++ +.+-. .+.-|.. -+..-|+ . .+...+..
T Consensus 2 ~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~-~~~p~~~~~~~~gl~------~~~~~~~~g~~~~~~~~~~~~ 74 (174)
T pfam07931 2 RIILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFV-EAMPPKRQDSGDGLE------WSTVGPVIGPEFPLFEAAFYE 74 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHH-HHCCCCCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 1999748998887999999998474746764285888-767711258877766------366665235669999999999
Q ss_pred HHCC-CCCCCEEEECCCHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2023-2225317863801112457-8887666531252221035554221256642331123233345565678989999
Q gi|254780240|r 71 RIRL-PDCDSGFILDGYPRTVDQA-KSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFL 148 (201)
Q Consensus 71 ~l~~-~~~~~g~ilDGFPRt~~Qa-~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~ 148 (201)
.+.. .+..+.+|+|...-+.... +.+.+.+... +-+.+-+.||.+++.+|-..|.-.+.+ ..
T Consensus 75 ~iaa~a~~G~nvIvD~v~~~~~~l~d~~~~~L~g~---~v~~VGV~Cpleil~~RE~~RgDR~~G-------------~A 138 (174)
T pfam07931 75 AVAAMARAGNNVIVDDVILSGEWLQDCLQRLLSGL---DVLFVGVRCPLEVLERREIERGDRVPG-------------LA 138 (174)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC---CEEEEEEECCHHHHHHHHHHCCCCCCC-------------HH
T ss_conf 99999977999899654669378999999985898---179999878999999998736999965-------------55
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCC-CCHHHHHHHHHHHH
Q ss_conf 99999999756999999967979999389-98899999999999
Q gi|254780240|r 149 KRIENYRKTILPLSSYYRDMGCLYIIDGM-LDMDEVSRSIDSLL 191 (201)
Q Consensus 149 ~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~-~~~~eV~~~I~~~l 191 (201)
+ -+ |.. | ++....=.+||++ .++++..+.|.+.|
T Consensus 139 ~-~q-~~~----V---H~~~~YDlevDTs~~s~~ecA~~I~~~l 173 (174)
T pfam07931 139 A-WQ-AEA----V---HAGVEYDLEVDTSHQTPEECARRIRSRL 173 (174)
T ss_pred H-HH-HHH----H---CCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 7-89-986----0---2599986686799999999999999973
No 103
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.93 E-value=3.3e-05 Score=53.36 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=52.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99987889996789999999718-----9489578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
|||+|.|||||||+|..|.+++. ..+|. ||-+|+.+.++-.+...-+ ..+-.. +..+...+....
T Consensus 7 iWltGlsgSGKTTia~~l~~~L~~~~~~~~~LD-GD~lR~~l~~~lgfs~~dR--~~n~~r------~~~la~~l~~~g- 76 (175)
T PRK00889 7 VWFTGLSGAGKTTISHALAEKLRARGYPVEVLD-GDIVRTNLSKGLGFSKEDR--DTNIRR------IGFVAHLLTRHG- 76 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC-CHHHHHHHCCCCCCCHHHH--HHHHHH------HHHHHHHHHHCC-
T ss_conf 998898999999999999999998699679977-6888875367889898999--999999------999999998189-
Q ss_pred CCEEEE----CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 531786----3801112457888766653125222103555422125664
Q gi|254780240|r 78 DSGFIL----DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 78 ~~g~il----DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
-++| -=|+...+.+.. .+. --+-|+++||.+++.+|
T Consensus 77 --~~vIvs~isp~~~~R~~~r~---~~~-----~~~EIyv~~~l~~~~~R 116 (175)
T PRK00889 77 --VIVLVSAISPYRETREEVRG---TIG-----NFVEVFVNAPLEVCEQR 116 (175)
T ss_pred --CEEEEEECCCCHHHHHHHHH---HCC-----CCEEEEECCCHHHHHHC
T ss_conf --86888504799999999998---578-----76699842888999880
No 104
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=97.91 E-value=7e-06 Score=57.60 Aligned_cols=58 Identities=28% Similarity=0.528 Sum_probs=42.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHH-HHHH--HHHHH----HHHHHHHHHCCCCCC
Q ss_conf 99987889996789999999718--94895789999-9996--00145----666677641344554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLR-AEVD--RNTLL----GKQVKGSMESGSLIS 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR-~~~~--~~s~~----g~~i~~~l~~G~lvp 60 (201)
++|+||||.|||.+|+-||+-+| |..||.|-+== +||+ +.|.. |+.||.+-..|--=|
T Consensus 453 lClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NP 519 (941)
T TIGR00763 453 LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP 519 (941)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 8720726954222789999996880499952672203112786432034672578999876041588
No 105
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=3.8e-05 Score=52.99 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=76.3
Q ss_pred EECCCCCCHHHHHHHHHHHHCCC---EECHHHHH-------HH---HHHHHHHH-------HHHHHHHHHCCCCCCCHHH
Q ss_conf 98788999678999999971894---89578999-------99---99600145-------6666776413445541035
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLNVP---QLSTGDML-------RA---EVDRNTLL-------GKQVKGSMESGSLISDAIV 64 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~~~---~is~gdll-------R~---~~~~~s~~-------g~~i~~~l~~G~lvpd~ii 64 (201)
|-|++||||||.|+.|++.++.. -|+--+.. .+ .+.-+.+. .+.++ .+.+|+.|..-+.
T Consensus 13 IaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~~v~~P~y 91 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGKPVDLPVY 91 (218)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHH-HHHCCCCCCCCCC
T ss_conf 867987788999999999828675247652232025301667553785744823436899999999-9976992245642
Q ss_pred HHHHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6655542023---2225317863801112457888766653125222103555422125664233112323334556567
Q gi|254780240|r 65 NQVVCDRIRL---PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSD 141 (201)
Q Consensus 65 ~~li~~~l~~---~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~D 141 (201)
.-.-..+... ....+-+|++|+=-=. ++.+.. ..|+-|++++|.++...|...|.....+.
T Consensus 92 d~~~~~r~~~~i~~~p~~VIIvEGi~~l~------d~~lr~---~~d~kIfvdt~~D~RliRri~RD~~~rg~------- 155 (218)
T COG0572 92 DYKTHTREPETIKVEPNDVVIVEGILLLY------DERLRD---LMDLKIFVDTDADVRLIRRIKRDVQERGR------- 155 (218)
T ss_pred CHHCCCCCCCCCCCCCCCEEEEECCCCCC------CHHHHH---HCCEEEEEECCCCHHHHHHHHHHHHHHCC-------
T ss_conf 03136325773313897289994230015------076776---60678999778327889988877988199-------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898999999999999756999999
Q gi|254780240|r 142 DKYDVFLKRIENYRKTILPLSSYY 165 (201)
Q Consensus 142 D~~e~i~~Rl~~y~~~~~pv~~~y 165 (201)
+ +...++.|.....|.-+-|
T Consensus 156 -~---~~~vi~qy~~~vkp~~~~f 175 (218)
T COG0572 156 -D---LESVIEQYVKTVRPMYEQF 175 (218)
T ss_pred -C---HHHHHHHHHHHHCHHHHHC
T ss_conf -9---8999999998617414601
No 106
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.84 E-value=0.00014 Score=49.50 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=82.9
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHCCC--EECHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCHH---HHHHHHHHH
Q ss_conf 69998-788999678999999971894--895789999999600---145666677641344554103---566555420
Q gi|254780240|r 2 RIIFL-GPPGSGKGTQACRLSQKLNVP--QLSTGDMLRAEVDRN---TLLGKQVKGSMESGSLISDAI---VNQVVCDRI 72 (201)
Q Consensus 2 ~I~i~-G~PGsGK~T~a~~la~~~~~~--~is~gdllR~~~~~~---s~~g~~i~~~l~~G~lvpd~i---i~~li~~~l 72 (201)
+|||+ |++-|||||+|+-|...+.-+ |+++ |-+++.+-.. .+-|.... ..|..-+..+ +...+...+
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~v-D~f~~~~p~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~i 78 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV-DSFIEALPLKCQDAEGGIEFD---GDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEH-HHHHHHCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 499986899898899999999847675688418-589886763136875422348---7766354156999999999999
Q ss_pred CC-CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23-22253178638011124578887666531252221035554221256642331123233345565678989999999
Q gi|254780240|r 73 RL-PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRI 151 (201)
Q Consensus 73 ~~-~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl 151 (201)
.. ....+.+|+|..=.+....+.+...+.. . +-+++-+.||.+++.+|=..|...+++ ..+.
T Consensus 79 aa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g--~-~v~~VGV~C~l~~l~~RE~~RgDR~~G------------~A~~-- 141 (175)
T cd00227 79 AAMARAGANVIADDVFLGRAALQDCWRSFVG--L-DVLWVGVRCPGEVAEGRETARGDRVPG------------QARK-- 141 (175)
T ss_pred HHHHHCCCCEEEEEEECCCHHHHHHHHHHCC--C-CEEEEEEECCHHHHHHHHHHCCCCCCC------------HHHH--
T ss_conf 9999779988986312380889999998579--9-279999878999999998745899964------------6788--
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHHH
Q ss_conf 999997569999999679799993899-8899999999999
Q gi|254780240|r 152 ENYRKTILPLSSYYRDMGCLYIIDGML-DMDEVSRSIDSLL 191 (201)
Q Consensus 152 ~~y~~~~~pv~~~y~~~~~l~~Idg~~-~~~eV~~~I~~~l 191 (201)
.|.. |- +....=.+||++. ++++..+.|.+-|
T Consensus 142 -q~~~----VH---~~~~YDleVDTs~~sp~eCA~~I~~~l 174 (175)
T cd00227 142 -QARV----VH---AGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred -HHHH----HH---CCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf -9998----43---599885687799999999999999971
No 107
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.84 E-value=7e-05 Score=51.33 Aligned_cols=105 Identities=22% Similarity=0.198 Sum_probs=54.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 69998788999678999999971---89-489578999999960014566667764134455410356655542023222
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
=|+|+|.|||||+|+|..|.+++ +. +.+==||-+|+...++- |--.++...+...+ .-++.++ .
T Consensus 26 viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~l~~dl--gfs~~dR~~n~~r~--~~lak~l--------~ 93 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHGLCSDL--GFSDADRKENIRRV--GEVAKLM--------V 93 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCC--CCCHHHHHHHHHHH--HHHHHHH--------H
T ss_conf 9998799999889999999999997599759977799987436678--98999999999999--9999999--------8
Q ss_pred CCE-EEE----CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 531-786----38011124578887666531252221035554221256642
Q gi|254780240|r 78 DSG-FIL----DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRI 124 (201)
Q Consensus 78 ~~g-~il----DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~ 124 (201)
.+| .|| -=|+-..+.+... +.. .--+-|+++||-+++.+|=
T Consensus 94 ~~G~iVIvs~Isp~~~~R~~~R~~---~~~---~~f~EIyl~~~le~c~~RD 139 (198)
T PRK03846 94 DAGLVVLTAFISPHRAERQMVRER---LGE---GEFIEVFVDTPLAICEARD 139 (198)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHH---CCC---CCEEEEEECCCHHHHHHCC
T ss_conf 589836641478879999999986---787---7579999438899998738
No 108
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.80 E-value=5.3e-05 Score=52.09 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=57.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-------CCEECHHHHH-------HHHHH--HHHHH---HHHHHHH---HHCCC-CC
Q ss_conf 99987889996789999999718-------9489578999-------99996--00145---6666776---41344-55
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-------VPQLSTGDML-------RAEVD--RNTLL---GKQVKGS---MESGS-LI 59 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-------~~~is~gdll-------R~~~~--~~s~~---g~~i~~~---l~~G~-lv 59 (201)
|=|.|+|||||||.|+.|++.++ ...+|+-+.+ +.... .+-+. ...+.++ +.+|+ -|
T Consensus 2 IGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~~~~~l~~~~~~~~~g~P~afD~~ll~~~L~~Lk~G~~~V 81 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKNV 81 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCE
T ss_conf 89788998779999999999860026999489997878757852288864665169930215999999999997599853
Q ss_pred --C--CHHHHHHHHHHHCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf --4--1035665554202322253178638-01112457888766653125222103555422125664233112
Q gi|254780240|r 60 --S--DAIVNQVVCDRIRLPDCDSGFILDG-YPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 60 --p--d~ii~~li~~~l~~~~~~~g~ilDG-FPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
| |...-.............+-+|++| ++=...+... ..+.+ -.|+-|++++|++++.+|...|..
T Consensus 82 ~~PvYd~~~~~r~~~~~~~i~~~~IiIvEGi~~L~~~~~~~--~~i~d---l~D~kIfvD~d~d~~~~r~i~R~~ 151 (220)
T cd02025 82 KIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPR--LFVSD---FFDFSIYVDADEDDIEKWYIKRFL 151 (220)
T ss_pred EEEECCCHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCCH--HHHHH---HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 40101212125789842872699869983232201652111--45675---465789807998999999999999
No 109
>KOG3877 consensus
Probab=97.80 E-value=0.0003 Score=47.36 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=61.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC---HHHHH--------HHHHHH--HHHHHHHHHHHHH--CCCCCCCHHHHHH
Q ss_conf 9998788999678999999971894895---78999--------999960--0145666677641--3445541035665
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS---TGDML--------RAEVDR--NTLLGKQVKGSME--SGSLISDAIVNQV 67 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is---~gdll--------R~~~~~--~s~~g~~i~~~l~--~G~lvpd~ii~~l 67 (201)
|++-|+-||||++.|+.||+++|+.|+- +++++ |.--.. .+--.-.++.+.+ +|.+ +-.+-..+
T Consensus 74 I~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dl-sa~~Q~r~ 152 (393)
T KOG3877 74 IVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDL-SAAMQDRI 152 (393)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCH-HHHHHHHH
T ss_conf 99857754670169999999719721564345514303567644001456896457554898604987117-89999999
Q ss_pred HH-------HHHCC-CCCCCEEEECCCHHH---------------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 55-------42023-222531786380111---------------------24578887666531252221035554221
Q gi|254780240|r 68 VC-------DRIRL-PDCDSGFILDGYPRT---------------------VDQAKSLHAFISNMDCAIDAVIELRVEDA 118 (201)
Q Consensus 68 i~-------~~l~~-~~~~~g~ilDGFPRt---------------------~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~ 118 (201)
.. +++.. ....+|+||.--|-+ ...... ..+.. -..|.+||+|+.|-.
T Consensus 153 y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~--nti~~-ll~PHLViYld~Pv~ 229 (393)
T KOG3877 153 YNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRK--NTIPQ-LLWPHLVIYLDTPVN 229 (393)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHH-HCCCCEEEEECCCCH
T ss_conf 986799999999999713873798537642589999987647301578999999976--20665-257517999748708
Q ss_pred HHHHHHHHHC
Q ss_conf 2566423311
Q gi|254780240|r 119 SMFKRIQVRV 128 (201)
Q Consensus 119 ~~~~R~~~R~ 128 (201)
.+.+++..|.
T Consensus 230 ~v~~~Ik~rg 239 (393)
T KOG3877 230 KVLENIKRRG 239 (393)
T ss_pred HHHHHHHHCC
T ss_conf 9999998539
No 110
>PRK07667 uridine kinase; Provisional
Probab=97.77 E-value=0.00019 Score=48.58 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=68.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC---CC--EECHHHHHH--HHH-HHHHH--------------HHHHHHHHHHCCCCCC
Q ss_conf 99987889996789999999718---94--895789999--999-60014--------------5666677641344554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN---VP--QLSTGDMLR--AEV-DRNTL--------------LGKQVKGSMESGSLIS 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~---~~--~is~gdllR--~~~-~~~s~--------------~g~~i~~~l~~G~lvp 60 (201)
|-|-|++||||||.|..|++.++ .+ .+++-+... +.. +.+.+ +-.++-.-+.+|+-+.
T Consensus 17 IgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~~~r~~~~~~~~~~~~~~~~D~~~L~~~ll~~Lk~g~~i~ 96 (190)
T PRK07667 17 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNETKLT 96 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99779897889999999999986659837999666242658887305985400125431259999999999843899767
Q ss_pred ----CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ----1035665554202322253178638011124578887666531252221035554221256642331123233345
Q gi|254780240|r 61 ----DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEK 136 (201)
Q Consensus 61 ----d~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~ 136 (201)
|........+.+ ..+...-+|++|.= -+-..|-. -.|+.|+++||.++...|...|..
T Consensus 97 ~p~Yd~~t~~~~~~~~-~v~p~~VIIvEGI~---l~~~elrd-------~~D~kIfVD~~~d~r~~R~~~~~~------- 158 (190)
T PRK07667 97 LPFYHDETDTCEMKKV-QIPIVGVIVIEGVF---LQRKEWRD-------FFHYMVYLDCPRETRFLRESEETQ------- 158 (190)
T ss_pred EEEECCCCCCCCCCEE-ECCCCCEEEEECHH---HCCHHHHH-------HCCEEEEEECCHHHHHHHHHHHHH-------
T ss_conf 5246023366776427-66999889995044---38887897-------568799997899999887302023-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 565678989999999999997569999999
Q gi|254780240|r 137 SVRSDDKYDVFLKRIENYRKTILPLSSYYR 166 (201)
Q Consensus 137 ~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~ 166 (201)
+.++.|.++-.|..++|-
T Consensus 159 ------------~~l~~~~~ry~~a~~~y~ 176 (190)
T PRK07667 159 ------------KNLSKFENRYWKAEDYYL 176 (190)
T ss_pred ------------HHHHHHHHHHHHHHHHHH
T ss_conf ------------468999999999999999
No 111
>PTZ00301 uridine kinase; Provisional
Probab=97.76 E-value=9.1e-05 Score=50.62 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=79.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CC---CEECHHHHHHH-------HH---HHHHHH---HHHHHH---HHHCCCCC
Q ss_conf 9998788999678999999971----89---48957899999-------99---600145---666677---64134455
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL----NV---PQLSTGDMLRA-------EV---DRNTLL---GKQVKG---SMESGSLI 59 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~----~~---~~is~gdllR~-------~~---~~~s~~---g~~i~~---~l~~G~lv 59 (201)
|-|.||.||||||.|+.|++.+ +- ..+|.-+-.+. +. +=+.+. ...+.+ .|.+|+.|
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~NfDhP~a~D~dLl~~~L~~Lk~Gk~I 85 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGKTV 85 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 99968876789999999999987614998079983676677876588656278899982303699999999999769963
Q ss_pred CCHHHHHHHH-HHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4103566555-42023---2225317863801112457888766653125222103555422125664233112323334
Q gi|254780240|r 60 SDAIVNQVVC-DRIRL---PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASE 135 (201)
Q Consensus 60 pd~ii~~li~-~~l~~---~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~ 135 (201)
--- +..... .+... ..-..-+|++|.=- .. +..+.+ ..|+.|++++|+++.+.|-..|-...-
T Consensus 86 ~~P-~Ydf~~h~R~~~~~~i~p~~vIIvEGi~~-l~-----~~~lr~---l~DlkIFvd~~~dirl~RRi~RDv~eR--- 152 (210)
T PTZ00301 86 QIP-QYDYVHHTRSDTAVTMTPKSVLIVEGILL-FT-----NAELRN---EMDCLIFVDTPLDICLIRRAKRDMRER--- 152 (210)
T ss_pred ECC-CCCCCCCCCCCCEEEECCCCEEEEEEEHH-CC-----CHHHHH---HHCEEEEECCCHHHHHHHHHHHHHHHH---
T ss_conf 446-65556776679708966885699971043-07-----898997---742457734872378899888778875---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCEEEECCCC----CHHHHHHHHHHHHHH
Q ss_conf 556567898999999999999756999999----9679799993899----889999999999999
Q gi|254780240|r 136 KSVRSDDKYDVFLKRIENYRKTILPLSSYY----RDMGCLYIIDGML----DMDEVSRSIDSLLVS 193 (201)
Q Consensus 136 ~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y----~~~~~l~~Idg~~----~~~eV~~~I~~~l~~ 193 (201)
+| +.|.+. +.|.+...|.-+-| ++.- =..|.... +++-+.+.|...|.+
T Consensus 153 --Gr---~~e~Vi---~qy~~~V~P~~~~fI~P~k~~A-DiIIp~~~~n~va~~~i~~~i~~~l~~ 209 (210)
T PTZ00301 153 --GR---TFESVI---EQYEATVRPMYYAYVEPSKVYA-DIIVPSWKDNSVAVGVLRAKLNHDLEN 209 (210)
T ss_pred --CC---CHHHHH---HHHHHHHCCCHHHHCCHHHHCC-CEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf --88---999999---9999662305887680516336-189789998631999999999999851
No 112
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.74 E-value=3.5e-05 Score=53.24 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=56.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-------ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHC
Q ss_conf 99987889996789999999718948-------95789999999600145666677641344554103566--5554202
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-------LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ--VVCDRIR 73 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-------is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~--li~~~l~ 73 (201)
|.|+||+|+||||-..+||.+|-+.| |++ |-.|-.. ..+++.|-+- .=||-+++.. =+.+.+.
T Consensus 213 valVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~-DtyRigA------~eQLk~Ya~i-lgvp~~v~~~~~~l~~al~ 284 (412)
T PRK05703 213 VALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL-DTYRIGA------VEQLKTYAKI-MGIPVKVAYDPKELAKALE 284 (412)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHH------HHHHHHHHHH-CCCEEEEECCHHHHHHHHH
T ss_conf 999888887567699999999999729981799983-7677779------9999999997-1973798479999999998
Q ss_pred CCCCCCEEEEC--CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 32225317863--80-11124578887666531252221035554
Q gi|254780240|r 74 LPDCDSGFILD--GY-PRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 74 ~~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
.....+-++|| |. ||+..+...|..++.... +++..++|.+
T Consensus 285 ~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~-~~~~~LVlsa 328 (412)
T PRK05703 285 QLANCDLILIDTAGRSQRDPRLISELKALIENSK-PIDVYLVLSA 328 (412)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 7158997999689889789999999999986248-8718999759
No 113
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=3.9e-05 Score=52.91 Aligned_cols=94 Identities=18% Similarity=0.311 Sum_probs=49.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--------EECHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHH--HHHHH
Q ss_conf 9998788999678999999971894--------8957899999996001-45666677641344554103566--55542
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP--------QLSTGDMLRAEVDRNT-LLGKQVKGSMESGSLISDAIVNQ--VVCDR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~--------~is~gdllR~~~~~~s-~~g~~i~~~l~~G~lvpd~ii~~--li~~~ 71 (201)
|.|+||.|+||||-..+||.+|.+. -+-+.|-.|-..-.+- -+|..+. ||-..+.. =+.+.
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~--------vp~~v~~~~~dl~~~ 248 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG--------IPVKAIESFKDLKEE 248 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC--------CCEEEECCHHHHHHH
T ss_conf 999899887578799999999998626767737999807875889999999999978--------806985788999999
Q ss_pred HCCCCCCCEEEEC--CC-HHHHHHHHHHHHHHHHHC
Q ss_conf 0232225317863--80-111245788876665312
Q gi|254780240|r 72 IRLPDCDSGFILD--GY-PRTVDQAKSLHAFISNMD 104 (201)
Q Consensus 72 l~~~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~~ 104 (201)
+......+-+++| |. |++..|...+.+++...+
T Consensus 249 l~~~~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~ 284 (388)
T PRK12723 249 ITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACG 284 (388)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 997249999999589988568999999999997418
No 114
>PRK09183 transposase/IS protein; Provisional
Probab=97.70 E-value=0.00022 Score=48.16 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHH
Q ss_conf 6999878899967899999997-----18948957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~ 37 (201)
||+++||||+|||..|.-|+.+ |..-++++.+|+.+
T Consensus 103 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~ 143 (258)
T PRK09183 103 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 143 (258)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 67998999986899999999999987993999789999999
No 115
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.69 E-value=3.2e-05 Score=53.50 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-EECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 69998788999678999999971894-8957899999996001456666776413445
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP-QLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~-~is~gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
+++|+||||=||||.|..+|+.+|.. ++..|=.| ++.+++...+-. |++|..
T Consensus 32 H~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L----~kPgDlaaiLt~-L~~gDV 84 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----EKPGDLAAILTN-LEEGDV 84 (305)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCC----CCHHHHHHHHHH-CCCCCE
T ss_conf 16631756874678999999983893267406755----475789999970-568963
No 116
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.65 E-value=5.4e-05 Score=52.05 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999878899967899999997189489
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
.+||.||||+||||.|..||+..+...+
T Consensus 54 S~Il~GPPGtGKTTLA~iIA~~t~~~F~ 81 (726)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFS 81 (726)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 2788897999999999999887488679
No 117
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.64 E-value=6.3e-05 Score=51.62 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEC
Q ss_conf 69998788999678999999971894895
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLS 30 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is 30 (201)
.++|.||||+||||.|..||+.++...+.
T Consensus 39 s~Il~GPPG~GKTTlA~iiA~~~~~~f~~ 67 (417)
T PRK13342 39 SMILWGPPGTGKTTLARIIAGATDAEFEA 67 (417)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 59988969998999999999986898899
No 118
>PRK04195 replication factor C large subunit; Provisional
Probab=97.62 E-value=6.5e-05 Score=51.52 Aligned_cols=27 Identities=30% Similarity=0.605 Sum_probs=24.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 999878899967899999997189489
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
++|.||||+||||.|..||+.+|+..+
T Consensus 43 lLL~GPpGvGKTT~a~~lAk~~g~~vi 69 (403)
T PRK04195 43 LLLYGPPGVGKTSLAHALANDYGWEVI 69 (403)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 998893998799999999998499859
No 119
>COG4639 Predicted kinase [General function prediction only]
Probab=97.61 E-value=0.0002 Score=48.41 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-CCCEE
Q ss_conf 99987889996789999999718948957899999996001456666776413445541035665554202322-25317
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD-CDSGF 81 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~-~~~g~ 81 (201)
++++|+|||||+|.|+..-. ....+|..|+ |... |....+-..+| .++.+.+++.+.+.+.- ..+-.
T Consensus 5 vvL~G~~~sGKsT~ak~n~~--~~~~lsld~~-r~~l------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl~~Gk~t 72 (168)
T COG4639 5 VVLRGASGSGKSTFAKENFL--QNYVLSLDDL-RLLL------GVSASKENSQK---NDELVWDILYKQLEQRLRRGKFT 72 (168)
T ss_pred EEEECCCCCCHHHHHHHHCC--CCCEECHHHH-HHHH------HHCHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99866887764289997179--9534149999-9886------20204665013---37999999999999999739768
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 863801112457888766653125222103555422125664233112323334556567898999999999
Q gi|254780240|r 82 ILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIEN 153 (201)
Q Consensus 82 ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~ 153 (201)
|+|-.---.++-+.+..+-...+..+ .+|+|+.|.+.+.+|-..|-... .+++|.+-++.
T Consensus 73 iidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~~Rqv-----------~~~VI~r~~r~ 132 (168)
T COG4639 73 IIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLRERQV-----------PEEVIPRMLRE 132 (168)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCEE-EEEEEECCHHHHHHHHHCCCHHC-----------CHHHHHHHHHH
T ss_conf 99754589999999999999839768-99998188999987740440017-----------98999999998
No 120
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=1.1e-05 Score=56.39 Aligned_cols=50 Identities=28% Similarity=0.513 Sum_probs=35.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 96999878899967899999997189489578999999960-014566667
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR-NTLLGKQVK 50 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~-~s~~g~~i~ 50 (201)
|||++.|+||+||+|.+.++++.+.-.-+.+|-++..|+.. +.-.|-.+-
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Iv 56 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIV 56 (179)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEE
T ss_conf 599986799845899999999999855966513983114208827515999
No 121
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.58 E-value=5e-05 Score=52.25 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=59.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CEECHHHHHHHH----------HHHHHH-------HHHHHHHHHHCCCCCCCHHH
Q ss_conf 999878899967899999997189-489578999999----------960014-------56666776413445541035
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV-PQLSTGDMLRAE----------VDRNTL-------LGKQVKGSMESGSLISDAIV 64 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~-~~is~gdllR~~----------~~~~s~-------~g~~i~~~l~~G~lvpd~ii 64 (201)
|-|-|+.||||||.|+.|.+.++- .-|+.-+..+.. .+=+.+ +...++. +.+|..++..+.
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~~~~iI~qDdyYk~~~~~~~~~~~~~NfDhP~AiD~~~l~~~L~~-l~~~~~~~~~~~ 80 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDY-WRETGHFPKFLR 80 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCCCCCC
T ss_conf 8996888875999999999987998897154467884327621305768767012058999999999-994897643101
Q ss_pred H-------------HH----HHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 6-------------65----554202322253178638011124578887666531252221035554221256642331
Q gi|254780240|r 65 N-------------QV----VCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVR 127 (201)
Q Consensus 65 ~-------------~l----i~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R 127 (201)
. .. ............-+|++||=--.. +.+ .+ ..|+-|++++|.+++++|-..|
T Consensus 81 s~~~~~~~~~~~~~~~~~~~r~~~~~~~~p~~iiIvEG~ll~~~--~~l----r~---l~DlkiFvd~~~d~~l~RR~~R 151 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNY--KPL----VD---LFDIRYFLRVPYETCKRRREAR 151 (187)
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECHHHCCC--HHH----HH---HCCEEEEEECCHHHHHHHHHCC
T ss_conf 33435667756741022211200011468964999917787198--999----98---6396799969999999997525
Q ss_pred CC
Q ss_conf 12
Q gi|254780240|r 128 VL 129 (201)
Q Consensus 128 ~~ 129 (201)
..
T Consensus 152 d~ 153 (187)
T cd02024 152 TG 153 (187)
T ss_pred CC
T ss_conf 78
No 122
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.57 E-value=7.1e-05 Score=51.30 Aligned_cols=26 Identities=35% Similarity=0.662 Sum_probs=23.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 99987889996789999999718948
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
++|.||||+||||.|..||+.++...
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~~ 78 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVNI 78 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 78878999988899999998408753
No 123
>PRK06526 transposase; Provisional
Probab=97.57 E-value=0.00033 Score=47.10 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=38.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHHHHHH--HHHHHHHHHHHHHCCCCC
Q ss_conf 6999878899967899999997-----189489578999999960--014566667764134455
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRAEVDR--NTLLGKQVKGSMESGSLI 59 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~~~~~--~s~~g~~i~~~l~~G~lv 59 (201)
||+|+||||+||+..|.-|+-. |...++++.+|+.+-... ...+.+.++.+..---||
T Consensus 100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~l~~~dLLI 164 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQDELVKLGRIPLLI 164 (254)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEE
T ss_conf 78998999986899999999999986996799877999999999885580999999851368776
No 124
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.00019 Score=48.61 Aligned_cols=36 Identities=33% Similarity=0.663 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC--CEECHHHHHHH
Q ss_conf 69998788999678999999971---89--48957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL---NV--PQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~---~~--~~is~gdllR~ 37 (201)
.++|.||||+||||.|+.||+.. +. ..++.+++...
T Consensus 21 ~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 61 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHH
T ss_conf 08998999988659999999971213798278547770467
No 125
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=97.55 E-value=6.5e-05 Score=51.55 Aligned_cols=33 Identities=33% Similarity=0.735 Sum_probs=26.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE--CHHHHH
Q ss_conf 999878899967899999997189489--578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL--STGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 35 (201)
|++.||||+||++.|+.||++++++.+ +.+++.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~ 35 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELV 35 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 98789999999999999999978985332420122
No 126
>PRK08181 transposase; Validated
Probab=97.54 E-value=0.00041 Score=46.50 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH-----HHCCCEECHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf 699987889996789999999-----718948957899999996--00145666677641
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQ-----KLNVPQLSTGDMLRAEVD--RNTLLGKQVKGSME 54 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~-----~~~~~~is~gdllR~~~~--~~s~~g~~i~~~l~ 54 (201)
||+|+||||+||+..|.-|+- .|...++++.+|+.+-.. .+..+.+.++.+..
T Consensus 108 Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~l~~ 167 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK 167 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 089989999878899999999999879939997899999999997755839999999744
No 127
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.54 E-value=0.00016 Score=49.12 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=32.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH---HC--CCEECH----HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999878899967899999997---18--948957----899999996001456666776413445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK---LN--VPQLST----GDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~---~~--~~~is~----gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
.+|.|||||||||.|..++-. .| ..++|+ .++++.. ..+|..+.++.+.|.+
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~----~~~g~d~~~~~~~g~l 62 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA----ESLGWDLERLEDEGLL 62 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----HHCCCCHHHHHHCCCE
T ss_conf 158768999999999999999987699789999507999999999----9839985898645856
No 128
>PRK13768 GTPase; Provisional
Probab=97.50 E-value=8.7e-05 Score=50.73 Aligned_cols=22 Identities=50% Similarity=0.691 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
++++|||||||+|.|+.+.+++
T Consensus 5 ~~ViGpaGSGKsT~~~~l~~~l 26 (253)
T PRK13768 5 VFFLGTAGSGKTTLVGALSDWL 26 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
No 129
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0045 Score=40.01 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=82.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EE-------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 9998788999678999999971894---89-------------------57899999996001456666776413445--
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP---QL-------------------STGDMLRAEVDRNTLLGKQVKGSMESGSL-- 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~---~i-------------------s~gdllR~~~~~~s~~g~~i~~~l~~G~l-- 58 (201)
|+++||.|+||.|.-......+... |+ |.-+..+.+-+ |.-+-+--..|..
T Consensus 8 I~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~-----g~FAlsWqAhGL~Yg 82 (192)
T COG3709 8 IAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQ-----GAFALSWQAHGLSYG 82 (192)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHC-----CCEEEEEHHCCCCCC
T ss_conf 999888877767799999987266874599999864667777655434588999988535-----762677310482225
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 54103566555420232225317863801112457888766653125222103555422125664233112323334556
Q gi|254780240|r 59 ISDAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSV 138 (201)
Q Consensus 59 vpd~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~ 138 (201)
+|-+|- ..+... .-+|..|=-.-+.|+..-. +--+|++|.++.+++-+|+..|..+
T Consensus 83 ip~eId-----~wl~~G---~vvl~NgSRa~Lp~arrry--------~~Llvv~ita~p~VLaqRL~~RGRE-------- 138 (192)
T COG3709 83 IPAEID-----LWLAAG---DVVLVNGSRAVLPQARRRY--------PQLLVVCITASPEVLAQRLAERGRE-------- 138 (192)
T ss_pred CCHHHH-----HHHHCC---CEEEEECCHHHHHHHHHHH--------HCCEEEEEECCHHHHHHHHHHHCCC--------
T ss_conf 716599-----998579---8899826276608899860--------0323699724878999999986547--------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 5678989999999999997569999999679799993899889999999999999
Q gi|254780240|r 139 RSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 139 R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
+.|.|..||.--...+ ..-+-+.+||.++.++..-++....|..
T Consensus 139 ----s~eeI~aRL~R~a~~~-------~~~~dv~~idNsG~l~~ag~~ll~~l~~ 182 (192)
T COG3709 139 ----SREEILARLARAARYT-------AGPGDVTTIDNSGELEDAGERLLALLHQ 182 (192)
T ss_pred ----CHHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf ----9999999997514343-------5899868973898677899999999975
No 130
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=97.47 E-value=0.00014 Score=49.53 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=56.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----------EECHHHHH-------HHHHHH-----HHH-------HHHHHHHH
Q ss_conf 9998788999678999999971894-----------89578999-------999960-----014-------56666776
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP-----------QLSTGDML-------RAEVDR-----NTL-------LGKQVKGS 52 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~-----------~is~gdll-------R~~~~~-----~s~-------~g~~i~~~ 52 (201)
|-|.||+||||||.|+.|++.++-. ++++-.-. ++.... ..+ +.+.++ .
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~-~ 80 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFK-E 80 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH-H
T ss_conf 899899857199999999999660587764124317986041024437576765145788978966235999999999-9
Q ss_pred HHCCCCCC----CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 41344554----103566555420232225317863801112457888-7666531252221035554221256642331
Q gi|254780240|r 53 MESGSLIS----DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSL-HAFISNMDCAIDAVIELRVEDASMFKRIQVR 127 (201)
Q Consensus 53 l~~G~lvp----d~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l-~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R 127 (201)
|.+|+.|. |........+. .......-+|++|.= .| ++.+. .-+|+-|+++++.++.+.|-..|
T Consensus 81 Lk~g~~i~~P~Ydf~~~~r~~~~-~~i~p~~viIvEGi~-------~l~~~~ir---~l~D~kIfid~~~d~rl~RRi~R 149 (196)
T pfam00485 81 LKEGGSGDKPIYNHVTGEADPWP-ELIEGADILFIEGLH-------GLYDERVA---QLLDLKIYVDPDIDLELIQKIQR 149 (196)
T ss_pred HHCCCCEEEEEEECCCCCCCCCC-EECCCCCEEEEECHH-------HCCCHHHH---HHHCEEEEEECCCCHHHHHHHHH
T ss_conf 70899457656751345336773-661788569994333-------30327788---76384799726801999999873
Q ss_pred CC
Q ss_conf 12
Q gi|254780240|r 128 VL 129 (201)
Q Consensus 128 ~~ 129 (201)
-.
T Consensus 150 D~ 151 (196)
T pfam00485 150 DM 151 (196)
T ss_pred CH
T ss_conf 45
No 131
>KOG0730 consensus
Probab=97.46 E-value=0.00056 Score=45.66 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=59.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH--HHHHHHHHHHHHH--------HHH----------HHHHHH-HC---CCC
Q ss_conf 99987889996789999999718948957--8999999960014--------566----------667764-13---445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST--GDMLRAEVDRNTL--------LGK----------QVKGSM-ES---GSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~--gdllR~~~~~~s~--------~g~----------~i~~~l-~~---G~l 58 (201)
|++.|||||||+|.|+.||..-+...+|+ -+|+-..+- +|+ .++ +|...- .+ +.-
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~ 549 (693)
T KOG0730 471 VLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSG 549 (693)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHCC-CHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCC
T ss_conf 7777899862478999986463587264157899877518-258999999999862698377446666666304787551
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 541035665554202322253178638011124578887666531252221035554221256642331
Q gi|254780240|r 59 ISDAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVR 127 (201)
Q Consensus 59 vpd~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R 127 (201)
|.|.++..|+.+ |......+++++-|= -|..+ .++..+--.| ..|.+|++..|+......+.+-
T Consensus 550 v~~RVlsqLLtE-mDG~e~~k~V~ViAA-TNRpd--~ID~ALlRPG-RlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730 550 VTDRVLSQLLTE-MDGLEALKNVLVIAA-TNRPD--MIDPALLRPG-RLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred HHHHHHHHHHHH-CCCCCCCCCEEEEEC-CCCHH--HCCHHHCCCC-CCCEEEEECCCCHHHHHHHHHH
T ss_conf 489999999987-004101470899950-58810--1269775986-5330575158347889999999
No 132
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.43 E-value=0.00021 Score=48.32 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=30.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EECHHHHHHH
Q ss_conf 9998788999678999999971894--8957899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP--QLSTGDMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~--~is~gdllR~ 37 (201)
|+++||||+|||..|+-+|..++++ .+++|+++-.
T Consensus 262 vLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~ 298 (491)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGG 298 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHH
T ss_conf 9997999987899999998663894699667997560
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.00013 Score=49.62 Aligned_cols=114 Identities=16% Similarity=0.340 Sum_probs=53.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHH------HHHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998788999678999999971894895789------999999600145-666677641344554103566555420232
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGD------MLRAEVDRNTLL-GKQVKGSMESGSLISDAIVNQVVCDRIRLP 75 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gd------llR~~~~~~s~~-g~~i~~~l~~G~lvpd~ii~~li~~~l~~~ 75 (201)
.+|.||||+||||.|+.+|+..+-.+-..|+ .. .++.+++.+ --++...-++| -+-+-++. +.+.-.
T Consensus 41 yLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C-~~i~~g~~~Dv~Eidaas~~g----vd~iR~~~-~~~~~~ 114 (541)
T PRK05563 41 YLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEIC-KKINEGLLMDVIEIDAASNNG----VDDIREII-ENVKYP 114 (541)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHCCCCCCEEEECCCCCCC----HHHHHHHH-HHCEEC
T ss_conf 530387995899999999999579998889857514889-998568988736624444478----89999999-761048
Q ss_pred C--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH------HHHHHH
Q ss_conf 2--2-53178638011124578887666531252221035554221------256642
Q gi|254780240|r 76 D--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDA------SMFKRI 124 (201)
Q Consensus 76 ~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~------~~~~R~ 124 (201)
+ + .+-||||-.-- --..+|..++.....||.+|+++-+..+ ++..|+
T Consensus 115 p~~~~~Kv~IiDEvhm--ls~~a~nallKtlEePp~~~~Filatte~~ki~~tI~SRc 170 (541)
T PRK05563 115 PQEGKYKVYIMDEVHM--LSQGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRC 170 (541)
T ss_pred CCCCCEEEEEEECCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHE
T ss_conf 7678705999977233--8999999999998548777569997698442745567421
No 134
>PRK06547 hypothetical protein; Provisional
Probab=97.42 E-value=0.00018 Score=48.80 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=61.3
Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHH-CCCEECHHHHHHH--HHHHHH-HHHHHHHHHHHCCCCCC----CHHHHHHHHHH
Q ss_conf 96999-8788999678999999971-8948957899999--996001-45666677641344554----10356655542
Q gi|254780240|r 1 MRIIF-LGPPGSGKGTQACRLSQKL-NVPQLSTGDMLRA--EVDRNT-LLGKQVKGSMESGSLIS----DAIVNQVVCDR 71 (201)
Q Consensus 1 m~I~i-~G~PGsGK~T~a~~la~~~-~~~~is~gdllR~--~~~~~s-~~g~~i~~~l~~G~lvp----d~ii~~li~~~ 71 (201)
|+|+. =||.||||||.|..|++.+ +...|.|-|+..- ....++ .+-..+-+-+.+|+-.. |..-...- ..
T Consensus 15 ~~iVaIDG~sGaGKTTLA~~La~~~~~~~vvHmDD~Y~GW~gl~~~~~~l~~~VL~Pl~~G~~~~yr~~DW~~~~~~-~~ 93 (184)
T PRK06547 15 MITVLIDGRSGSGKTTLAGELAACWEGSQLVHLDDLYPGWDGLAAASEHVREALLDPRALGRPGRWRRWDWANNCPG-GW 93 (184)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC-CC
T ss_conf 69999868998888999999997457982897057777765404689999999864641899736606215789978-75
Q ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02322253178638011124578887666531252221035554221256642331
Q gi|254780240|r 72 IRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVR 127 (201)
Q Consensus 72 l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R 127 (201)
...+...-.|++|-=--.. .+ .. -.++.|.+++|+++-.+|.+.|
T Consensus 94 -~~v~~~~~lIvEGvga~~~---~~----r~---~~d~~IWve~~~~~r~~R~l~R 138 (184)
T PRK06547 94 -VTVEPGRRLIIEGVGALTA---AN----RA---LADLTVWLEGPEALRKQRALTR 138 (184)
T ss_pred -EECCCCCCEEEECCCCCCH---HH----CC---CCCEEEEEECCHHHHHHHHHHC
T ss_conf -6737888189966231563---13----14---1237777748989999999860
No 135
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.42 E-value=0.00076 Score=44.83 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHHH
Q ss_conf 6999878899967899999997-----189489578999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRAE 38 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~~ 38 (201)
+|+++||||+|||..|.-|+.+ |...++++.+++.+-
T Consensus 49 Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T pfam01695 49 NLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQL 90 (178)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH
T ss_conf 689989999878999999999999869859999616799999
No 136
>PRK13695 putative NTPase; Provisional
Probab=97.40 E-value=0.00015 Score=49.20 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9699987889996789999999718
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
|||+|.|+||+||||...++.+.+.
T Consensus 4 ~kI~iTG~PGvGKTTli~Kv~~~L~ 28 (174)
T PRK13695 4 LRIGITGMPGVGKTTLVLKIAELLA 28 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 2999878999889999999999986
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.37 E-value=0.00018 Score=48.77 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=28.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE--ECHHHHHHH
Q ss_conf 99987889996789999999718948--957899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ--LSTGDMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~--is~gdllR~ 37 (201)
|++.||||+|||..|+.+|...+.+. ++..+++..
T Consensus 169 vLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk 205 (390)
T PRK03992 169 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 205 (390)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 7868989997899999999874888799667997524
No 138
>pfam03976 PPK2 Polyphosphate kinase 2 (PPK2). Inorganic polyphosphate (polyP) plays a role in metabolism and regulation and has been proposed to serve as a energy source in a pre-ATP world. In prokaryotes, the synthesis and utilisation of polyP are catalysed by PPK1, PPK2 and polyphosphatases. Proteins with a single PPK2 domain catalyse polyP-dependent phosphorylation of ADP to ATP, whereas proteins containing 2 fused PPK2 domains phosphorylate AMP to ADP. The structure of PPK2 from Pseudomonas aeruginosa has revealed a a 3-layer alpha/beta/alpha sandwich fold with an alpha-helical lid similar to the structures of microbial thymidylate kinases.
Probab=97.36 E-value=0.0035 Score=40.69 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=104.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH---HHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCC
Q ss_conf 99987889996789999999718948957---8999999960014566667764134455--410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST---GDMLRAEVDRNTLLGKQVKGSMESGSLI--SDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~---gdllR~~~~~~s~~g~~i~~~l~~G~lv--pd~ii~~li~~~l~~~~~ 77 (201)
|+|-|..|||||....+|.+.+.=-++.+ +.--.+|. ..-.+.+--+..=.+|+.. --..-..++.+++.....
T Consensus 34 Iv~eG~daaGKg~~I~~l~~~lDPrg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~I~iFdrSWY~~~l~~rv~g~~~ 112 (229)
T pfam03976 34 VIFEGRDAAGKGGAIKRITEALNPRGARIVALPAPTEEER-SQWYFQRYVQHLPAGGEIVLFDRSWYNRAGVERVMGFCT 112 (229)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHH-CCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 9996657787369999998625988569986899997884-786199998637777818997462556689999834499
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 53178638011124578887666531252221035554221256642331123233345565678989999999999997
Q gi|254780240|r 78 DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157 (201)
Q Consensus 78 ~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~ 157 (201)
. +-|.+.+++...|+..+...|..+ +-|+|+++.++-.+|+..|..+|.+.= +.+...-...+++..|..-
T Consensus 113 ~-----~~~~~~~~~I~~FE~~L~~~G~~i-vKf~lhIsk~eQ~~Rl~~r~~~p~k~W---k~s~~D~~~~~~~d~y~~a 183 (229)
T pfam03976 113 P-----KQYERFLREIPEFERMLTDSGIRV-VKFWLSISDEEQLERFKERRNDPLKQW---KLSPMDLKSREKWDDYTKA 183 (229)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHHHH
T ss_conf 9-----999999999999999999679459-999885498999999998742974263---0677899998769999999
Q ss_pred HHHHHHHHHH-CCCEEEECCCCCHHH---HHHHHHHHHHHH
Q ss_conf 5699999996-797999938998899---999999999999
Q gi|254780240|r 158 ILPLSSYYRD-MGCLYIIDGMLDMDE---VSRSIDSLLVSV 194 (201)
Q Consensus 158 ~~pv~~~y~~-~~~l~~Idg~~~~~e---V~~~I~~~l~~~ 194 (201)
...+++.=.. ..-++.|+|+..--. |.+.|+..|+..
T Consensus 184 ~e~~l~~T~t~~APW~vI~a~dk~~a~l~v~~~ll~~le~~ 224 (229)
T pfam03976 184 KDEMLARTSTPDAPWTVVPADDKKRARLNVIRHLLDALKYE 224 (229)
T ss_pred HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999724999999599858980889999999999847623
No 139
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.36 E-value=0.00032 Score=47.18 Aligned_cols=34 Identities=32% Similarity=0.692 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-EECHHHHH
Q ss_conf 69998788999678999999971894-89578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP-QLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~-~is~gdll 35 (201)
+++|.||||.||||.|..+|+.++.. ++..|-.+
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~l 87 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 05765889988999999999986888156245001
No 140
>PRK04328 hypothetical protein; Provisional
Probab=97.36 E-value=0.00038 Score=46.71 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH---HC--CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999878899967899999997---18--948957899999996001456666776413445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK---LN--VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~---~~--~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
+++.|+|||||||.|...+.. .| ..++|..+--..-+++-..+|-.++++.++|.+
T Consensus 27 ~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~~~~~~~G~d~~~~~~~g~l 87 (250)
T PRK04328 27 VLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKF 87 (250)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCE
T ss_conf 9998289999899999999999876997799997279999999999809986898656977
No 141
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.34 E-value=0.00063 Score=45.36 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=55.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---C--CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998788999678999999971---8--9489578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---N--VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~--~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
|++.|.|+|||+|-|+.|++.+ + ..+++- +.+.-+ + ...+..-.+-.-+|. +...+...+.+.
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d-~~~~~~--~-~~y~~s~~Ek~~R~~------l~s~v~r~Ls~~-- 69 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISD-ESLGIE--S-DDYKDSKKEKFLRGS------LRSAVKRDLSKN-- 69 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCCCCC--C-CCCCCCHHHHHHHHH------HHHHHHHHHCCC--
T ss_conf 7985799996889999999999975993899780-012675--3-100010478999999------999998751668--
Q ss_pred CCEEEECCCHHHHHHHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 53178638011124578--8876665312522210355542212566423311
Q gi|254780240|r 78 DSGFILDGYPRTVDQAK--SLHAFISNMDCAIDAVIELRVEDASMFKRIQVRV 128 (201)
Q Consensus 78 ~~g~ilDGFPRt~~Qa~--~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~ 128 (201)
.-+|+|+- |+-..- .|..+ ......+.++++++||.+.+.+|=..|.
T Consensus 70 -~iVIlD~~--NYiKG~RYEL~C~-Ak~~~t~~c~v~~~~p~e~~~~~N~~r~ 118 (266)
T pfam08433 70 -TIVIVDSL--NYIKGFRYELYCI-AKEAKTTYCVVYCKAPLDTCLKWNEERG 118 (266)
T ss_pred -CEEEECCC--CCHHHHHHHHHHH-HHHCCCCEEEEEECCCHHHHHHHHCCCC
T ss_conf -88995487--4045689999999-9863888489996899899998621477
No 142
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=97.32 E-value=0.00013 Score=49.74 Aligned_cols=32 Identities=44% Similarity=0.809 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH
Q ss_conf 6999878899967899999997189489578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdll 35 (201)
|++|+||||||||..|+++.-= ||-++.-++|
T Consensus 215 Nlll~GPPGsGKTmla~r~~gi--LP~L~~~Eal 246 (505)
T TIGR00368 215 NLLLLGPPGSGKTMLASRLQGI--LPPLTNEEAL 246 (505)
T ss_pred CEEEECCCCCCHHHHHHHHHCC--CCCCCCHHHH
T ss_conf 4376782496268999875105--7864512666
No 143
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.32 E-value=0.00035 Score=46.93 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=63.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-----HHHHHHHHHH-----------H-HHHHHHHHCCCCCCCHHHHH
Q ss_conf 99878899967899999997189489578999-----9999600145-----------6-66677641344554103566
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-----RAEVDRNTLL-----------G-KQVKGSMESGSLISDAIVNQ 66 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-----R~~~~~~s~~-----------g-~~i~~~l~~G~lvpd~ii~~ 66 (201)
+|.||-|.||||.|+.+|+-+|=. -..|+=- ..++.+|+.. | ..|++..++=+..|
T Consensus 40 LF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P------ 112 (363)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIRELRENVKYAP------ 112 (363)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCC------
T ss_conf 502859976355899999986588-7877877775022776528986668864865687889999987303687------
Q ss_pred HHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHH
Q ss_conf 55542023222531786380111245788876665312522210355542------21256642
Q gi|254780240|r 67 VVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRI 124 (201)
Q Consensus 67 li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~ 124 (201)
....-+-||||=- .|=-..+|..+|.....||.+|+|+-+. +.|++.|+
T Consensus 113 -------~~~kYKvYIIDEV--HMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRC 167 (363)
T TIGR02397 113 -------SKGKYKVYIIDEV--HMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRC 167 (363)
T ss_pred -------CCCCCCEEEEECC--CCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEEC
T ss_conf -------5544335887323--028656899987652279876288873487112055402100
No 144
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.32 E-value=0.00081 Score=44.67 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=29.0
Q ss_pred EEECCCCCCHHHHHHHHHHH------HCCCEECHHHHHHHHH
Q ss_conf 99878899967899999997------1894895789999999
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQK------LNVPQLSTGDMLRAEV 39 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~------~~~~~is~gdllR~~~ 39 (201)
+++|.|||||+|.|+.|... +.+.||+-.|++-.+.
T Consensus 3 VLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlIp~~~ 44 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAA 44 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHH
T ss_conf 432698787368999999998644476058986212142545
No 145
>KOG0744 consensus
Probab=97.32 E-value=0.00017 Score=48.87 Aligned_cols=36 Identities=33% Similarity=0.699 Sum_probs=26.1
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHCCC-----------EECHHHHHHH
Q ss_conf 6999-8788999678999999971894-----------8957899999
Q gi|254780240|r 2 RIIF-LGPPGSGKGTQACRLSQKLNVP-----------QLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i-~G~PGsGK~T~a~~la~~~~~~-----------~is~gdllR~ 37 (201)
|+++ -||||.||++.|+-||+|+.+- -|+...|+-+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSK 225 (423)
T KOG0744 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSK 225 (423)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHH
T ss_conf 489985799988227999998751465237644406999704678898
No 146
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.00037 Score=46.79 Aligned_cols=93 Identities=26% Similarity=0.384 Sum_probs=52.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-----ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH--HHHHHCCC
Q ss_conf 99987889996789999999718948-----957899999996001456666776413445541035665--55420232
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-----LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQV--VCDRIRLP 75 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-----is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~l--i~~~l~~~ 75 (201)
|.|+||-|+||||-..+||.+|.+.+ +=+-|-.|=+.- .+++.|- +=.-||-+++... +.+.+.+.
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAv------EQLktYa-~Il~iPv~vv~~~~el~~al~~~ 298 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAI------EQLKRYA-DTMGMPFYPVKDIKKFKETLARD 298 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH------HHHHHHH-HHHCCCEEEEECHHHHHHHHHHC
T ss_conf 9998999988899999999999997499279995266537799------9999999-98599459951899999999856
Q ss_pred CCCCEEEEC--CC-HHHHHHHHHHHHHHHHH
Q ss_conf 225317863--80-11124578887666531
Q gi|254780240|r 76 DCDSGFILD--GY-PRTVDQAKSLHAFISNM 103 (201)
Q Consensus 76 ~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~ 103 (201)
+| +-++|| |- ||+..|.+.+..++...
T Consensus 299 ~~-DlILIDTAGrS~rd~~~~~eL~~ll~~~ 328 (432)
T PRK12724 299 GS-ELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred CC-CEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99-9999929998978999999999999863
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.29 E-value=0.00019 Score=48.57 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=38.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHHH-HHH--HHHHH----HHHHHHHHHCCCCCC
Q ss_conf 99987889996789999999718--948957899999-996--00145----666677641344554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLRA-EVD--RNTLL----GKQVKGSMESGSLIS 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~-~~~--~~s~~----g~~i~~~l~~G~lvp 60 (201)
++|+||||.|||+.|+.+|+.+| |..+|.|-+=-+ |++ +.|.. |+.|+..-..|..=|
T Consensus 352 lclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nP 418 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP 418 (784)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 9964699877246999999985898699806887888882564334344368389999997489885
No 148
>PRK12377 putative replication protein; Provisional
Probab=97.28 E-value=0.00071 Score=45.02 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHH
Q ss_conf 6999878899967899999997-----18948957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~ 37 (201)
+++|+||||.||+..|.-|+-+ +...++++.||+..
T Consensus 103 NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~ 143 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 08998999987889999999999987996999889999999
No 149
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=97.27 E-value=0.00023 Score=48.04 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=69.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCEECHHHHHHHHHHH--H---HHHHHHHHHHHHC--CC-CCCCH----------
Q ss_conf 69998788999678999999971-89489578999999960--0---1456666776413--44-55410----------
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL-NVPQLSTGDMLRAEVDR--N---TLLGKQVKGSMES--GS-LISDA---------- 62 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~-~~~~is~gdllR~~~~~--~---s~~g~~i~~~l~~--G~-lvpd~---------- 62 (201)
+-+|-|=||.||||+|+.|++-| ..-.+|=|.++-.|... | --++++.++.+++ |. |-=||
T Consensus 44 HMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERADLVGEYIGHTAqkTRe~~kkA~GGvLFiDEAYSLaRGGEK 123 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEK 123 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 87742786684389999999998533756788678876222122320300489999999863880055777776148888
Q ss_pred ----HHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf ----356655542023222531786380111245788876665312522210355542212566
Q gi|254780240|r 63 ----IVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFK 122 (201)
Q Consensus 63 ----ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~ 122 (201)
..+..+.+.|+....+=-.||=|||.-++- | +-.++|.+-=+-|.|+-||-+..+
T Consensus 124 DFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~y---F--L~~NPGL~SRFPi~i~FPdY~~ee 182 (261)
T TIGR02881 124 DFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDY---F--LSLNPGLRSRFPISIDFPDYTVEE 182 (261)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH---H--HHCCCCCCCCCCCEEECCCCCHHH
T ss_conf 7662088899998761569868997087689999---8--620779777665054188998889
No 150
>KOG0733 consensus
Probab=97.26 E-value=0.0014 Score=43.11 Aligned_cols=27 Identities=44% Similarity=0.779 Sum_probs=13.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEC
Q ss_conf 998788999678999999971894895
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQLS 30 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~is 30 (201)
++-||||||||..|.-+|-++|++.++
T Consensus 227 LlHGPPGCGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733 227 LLHGPPGCGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 644899864789999975212885485
No 151
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.25 E-value=0.00055 Score=45.72 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=30.7
Q ss_pred EEEECCCCCCHHHHHHHHH----HHH--CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998788999678999999----971--8948957899999996001456666776413445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS----QKL--NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la----~~~--~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
++|.|+|||||++.|..++ .+. ...++|+.+--.+-+++-..+|-.+.++.++|++
T Consensus 22 ~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~g~l 83 (231)
T pfam06745 22 VLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEEGKL 83 (231)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCE
T ss_conf 99985897259999999999999865896899981379999999999829985898646967
No 152
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=97.25 E-value=0.00037 Score=46.79 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.2
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999-878899967899999997189489
Q gi|254780240|r 2 RIIF-LGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i-~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
+|++ .|||||||+|..+.||+.+|+..+
T Consensus 46 ~iLlLtGPaG~GKTTTI~lLAkeLG~ei~ 74 (490)
T pfam03215 46 LILLLTGPSGCGKSTTVKVLSKELGIEII 74 (490)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 18998798998899999999997596899
No 153
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00029 Score=47.50 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 999878899967899999997189489
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
.||.||||+||||+|..||...+....
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~ 77 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFE 77 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 577789998888999999876177669
No 154
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00053 Score=45.81 Aligned_cols=34 Identities=35% Similarity=0.728 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-EECHHHHH
Q ss_conf 69998788999678999999971894-89578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP-QLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~-~is~gdll 35 (201)
+++++||||-||+|.|..+|..+|.- ++..|-.|
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 47864799876888999999985677376366201
No 155
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.21 E-value=0.00015 Score=49.27 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
.|.+.|++||||+|+|+.|++.|
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 156
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.15 E-value=0.00016 Score=49.04 Aligned_cols=87 Identities=24% Similarity=0.470 Sum_probs=53.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE--------ECHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HH
Q ss_conf 99987889996789999999718948--------957899999996--00145666677641344554103566555-42
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ--------LSTGDMLRAEVD--RNTLLGKQVKGSMESGSLISDAIVNQVVC-DR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~--------is~gdllR~~~~--~~s~~g~~i~~~l~~G~lvpd~ii~~li~-~~ 71 (201)
|=|.||.|+||||.|-.||++.+=|. +.+.||+-+... ..+.+-+-|....+. ++.+.+=|. .+
T Consensus 24 vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~-----~d~~~~~W~D~r 98 (265)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVKL-----EDIVRQNWVDNR 98 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECC-----CCCCCCCCCCCH
T ss_conf 674478885568999999973689689986582326544231546752222320121113425-----122002667835
Q ss_pred HCCCCCCCEE--EECCCHHHHHHHHH
Q ss_conf 0232225317--86380111245788
Q gi|254780240|r 72 IRLPDCDSGF--ILDGYPRTVDQAKS 95 (201)
Q Consensus 72 l~~~~~~~g~--ilDGFPRt~~Qa~~ 95 (201)
|- .-|+.|| |-|=|-||...+..
T Consensus 99 Lt-~Av~eG~TLVYdEF~RskP~~nN 123 (265)
T TIGR02640 99 LT-LAVREGFTLVYDEFTRSKPETNN 123 (265)
T ss_pred HH-HHHHCCCEEEECCCCCCCCHHHH
T ss_conf 78-99756972766475788620456
No 157
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.15 E-value=0.00052 Score=45.85 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EECHHHHHHHHHHHHHHHHHH
Q ss_conf 9998788999678999999971894--895789999999600145666
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP--QLSTGDMLRAEVDRNTLLGKQ 48 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~--~is~gdllR~~~~~~s~~g~~ 48 (201)
|++.||||+|||-.|+-+|...+-+ .+-.++++++.+-+|..+=+.
T Consensus 159 vLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~KyIGEGArLV~~ 206 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVRE 206 (364)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCHHHHHHH
T ss_conf 570075797688999986314551268860444444441331689999
No 158
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0011 Score=43.80 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=52.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE-----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999878899967899999997189489-----578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL-----STGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i-----s~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
.+|.||.|+||+|.|+.+|+.++-.+= .+|.+.. .. ..+ ..+.+. ++..--.-+-+-.++ +.+...+.
T Consensus 43 YLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~-~~-~~s---~DViEI-DAASn~gVDdIReLi-e~v~y~P~ 115 (718)
T PRK07133 43 YLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE-NF-NNN---LDIIEM-DAASNNGVDEIRELR-ENVKNLPQ 115 (718)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-CC-CCC---CCEEEE-CCCCCCCHHHHHHHH-HHHCCCCC
T ss_conf 862389986889999999999679999999997702143-04-789---873775-455668889999999-98255887
Q ss_pred ---CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ---531786380111245788876665312522210355542
Q gi|254780240|r 78 ---DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 (201)
Q Consensus 78 ---~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~ 116 (201)
.+-||||..-+ -...+|..++.....||..|+++-|.
T Consensus 116 ~gkYKVyIIDEvHM--LS~~AfNALLKtLEEPP~hvvFILaT 155 (718)
T PRK07133 116 ISKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (718)
T ss_pred CCCEEEEEEECCCC--CCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 78724999966200--79999999998502798782799970
No 159
>PRK07429 phosphoribulokinase; Provisional
Probab=97.13 E-value=0.00074 Score=44.89 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=60.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHCC---CEECHHHHH---HHHHHH--HH-------HH---HHHHHHHHHCCCCCCCHHHH
Q ss_conf 99878899967899999997189---489578999---999960--01-------45---66667764134455410356
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNV---PQLSTGDML---RAEVDR--NT-------LL---GKQVKGSMESGSLISDAIVN 65 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~---~~is~gdll---R~~~~~--~s-------~~---g~~i~~~l~~G~lvpd~ii~ 65 (201)
-|.|..||||+|.++.|++.||- .+|+.-+-- |++... -+ ++ .+.++ .|.+|+.|---+ -
T Consensus 12 GIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~-~Lk~Gk~I~~Pv-Y 89 (331)
T PRK07429 12 GVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLK-ALKTGQPILKPI-Y 89 (331)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHH-HHHCCCCCCCCC-C
T ss_conf 98578877899999999998388877999478677788788987189878964005999999999-998599725652-3
Q ss_pred HHHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 655542023---2225317863801112457888766653125222103555422125664233112
Q gi|254780240|r 66 QVVCDRIRL---PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 66 ~li~~~l~~---~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
.....++.. ....+-+|++|.=--.. ..+.+ -.|+-|++++++++...|-..|..
T Consensus 90 dh~tg~~~~~~~I~P~~vIIvEGLh~L~~------~~lR~---l~DlKIFVD~d~diR~~rRI~RDv 147 (331)
T PRK07429 90 NHETGKIDPPEYIKPNKIVVVEGLHPLYD------ERVRD---LYDFKVYLDPPDEVKIAWKIKRDM 147 (331)
T ss_pred CCCCCCCCCCEEECCCCEEEEECCHHCCC------HHHHH---HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 56478778866606886799916121287------98997---549379964878899999888778
No 160
>KOG0736 consensus
Probab=97.13 E-value=0.0012 Score=43.59 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHH--HHHHH
Q ss_conf 999878899967899999997189489578--99999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTG--DMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~g--dllR~ 37 (201)
|++.||||.|||-.|+.+|-.+.+..+|+. +||-.
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736 708 ILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred EEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHHH
T ss_conf 5887799985579999987543036785058899887
No 161
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.13 E-value=0.00084 Score=44.58 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=42.5
Q ss_pred EEEECCCCCCHHHHHHHHH----HHHCCC--EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-------------
Q ss_conf 9998788999678999999----971894--895789999999600145666677641344554103-------------
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS----QKLNVP--QLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI------------- 63 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la----~~~~~~--~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~i------------- 63 (201)
+++.|+|||||||.|-... +.+|=+ +++..+--.+-+++-..+|-...+++++|.+...++
T Consensus 27 ~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~~~~ 106 (501)
T PRK09302 27 TLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEAGEY 106 (501)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99983899999999999999998855997899985799999999999849986897326838999615674311133447
Q ss_pred ----HHHHHHHHHCCCCCCCEEEECCCH
Q ss_conf ----566555420232225317863801
Q gi|254780240|r 64 ----VNQVVCDRIRLPDCDSGFILDGYP 87 (201)
Q Consensus 64 ----i~~li~~~l~~~~~~~g~ilDGFP 87 (201)
+...+...+.... .+.+|||++.
T Consensus 107 dL~~l~~~I~~~v~~~~-~~RvViDSlt 133 (501)
T PRK09302 107 DLSALIERIEYAIRKIK-AKRVVIDSIE 133 (501)
T ss_pred CHHHHHHHHHHHHHHHC-CCEEEECCHH
T ss_conf 68999999999999719-9999999978
No 162
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00039 Score=46.65 Aligned_cols=58 Identities=28% Similarity=0.542 Sum_probs=38.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHHH-HHH--HHHHH----HHHHHHHHHCCCCCC
Q ss_conf 99987889996789999999718--948957899999-996--00145----666677641344554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLRA-EVD--RNTLL----GKQVKGSMESGSLIS 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~-~~~--~~s~~----g~~i~~~l~~G~lvp 60 (201)
++++||||.|||+.++.+|+.+| |+.+|.|-+=-+ |++ +.|.. |+.++.+-..|..=|
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NP 419 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP 419 (782)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 9997899887011899999995897799954765427775355312335687289999998677687
No 163
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0011 Score=43.96 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=49.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 999878899967899999997189489578999-----99996001456666776413445541035665554202322-
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-----RAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD- 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-----R~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~- 76 (201)
.+|.||+|+||+|.|..+|+.++-..-..|+.. ...+..++.. .+-+ ++.+.--.-+-+-+++ +.+.-.+
T Consensus 41 YLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~--DviE-Idaasn~gIDeIReLi-e~~~~~P~ 116 (613)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV--DIVE-LDAASNNGVDEIRNII-DNINYLPT 116 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC--CEEE-EECCCCCCHHHHHHHH-HHHCCCCC
T ss_conf 775589984889999999999669999999988888789998569999--8688-4065557889999999-97085875
Q ss_pred --CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf --2531786380111245788876665312522210355542
Q gi|254780240|r 77 --CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 (201)
Q Consensus 77 --~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~ 116 (201)
..+-||||.-=+=-.+ ++..++.....||..++++-+.
T Consensus 117 ~gkyKV~IIDEah~Ln~~--AaNALLKtLEEPP~~viFIL~T 156 (613)
T PRK05896 117 TFKYKVYIIDEAHMLSTS--AWNALLKTLEEPPKHVVFIFAT 156 (613)
T ss_pred CCCCEEEEECCHHHCCHH--HHHHHHHHCCCCCCCCEEEEEE
T ss_conf 799459998162217999--9999998534898783799982
No 164
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0015 Score=42.95 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=57.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC----HHHHH-HHHHHHHHHHH---HHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9998788999678999999971894895----78999-99996001456---6667764134455410356655542023
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS----TGDML-RAEVDRNTLLG---KQVKGSMESGSLISDAIVNQVVCDRIRL 74 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is----~gdll-R~~~~~~s~~g---~~i~~~l~~G~lvpd~ii~~li~~~l~~ 74 (201)
-+|.||.|+||+|.|+.||+.++-.+=. +|.+- ...+..++.-. .++...-++| | |+ +-+| .+++.-
T Consensus 40 YLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g~~~~~DviEiDAAS~~g--V-dd-iReL-~e~~~y 114 (775)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPGGPGSLDVVEIDAASHGG--V-DD-AREL-RERAFF 114 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCC--H-HH-HHHH-HHHCCC
T ss_conf 76237888788899999999966899999898888763788863898888668731565568--8-99-9999-985476
Q ss_pred CC---CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHH
Q ss_conf 22---2531786380111245788876665312522210355542--21256642331
Q gi|254780240|r 75 PD---CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE--DASMFKRIQVR 127 (201)
Q Consensus 75 ~~---~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~--~~~~~~R~~~R 127 (201)
.+ ..+-||||-- .+-....|+.+|.....+|.+|+|+-+. .+.+..-+..|
T Consensus 115 ~P~~~ryKVyIIDEa--Hmls~~afNALLKtLEEPP~hvvFIlaTTep~kip~TI~SR 170 (775)
T PRK07764 115 APAQSRYRIFIIDEA--HMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVIGTIRSR 170 (775)
T ss_pred CCCCCCEEEEEEECH--HHHCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHH
T ss_conf 876786359998535--44079999999886227864627999548735471677641
No 165
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0011 Score=43.85 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC-----HHHH-HHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998788999678999999971894895-----7899-999996001456-66677641344554103566555420232
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS-----TGDM-LRAEVDRNTLLG-KQVKGSMESGSLISDAIVNQVVCDRIRLP 75 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is-----~gdl-lR~~~~~~s~~g-~~i~~~l~~G~lvpd~ii~~li~~~l~~~ 75 (201)
.+|.||+|+||+|.|+.+|+.++-.+-. +|.. ...++.+++..- .++...-++| -+-+-+++ +...-.
T Consensus 42 yLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~~g----VddIRel~-e~v~~~ 116 (462)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDVIEIDGASHRG----IEDIRQIN-ETVLFT 116 (462)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCC----HHHHHHHH-HHHCCC
T ss_conf 4303899859999999999996799998888988766888998638999868643553446----68999999-771008
Q ss_pred C--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 2--2-53178638011124578887666531252221035554
Q gi|254780240|r 76 D--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 76 ~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
+ + .+-||||.-=. -...+|..++.....+|..|+++-+
T Consensus 117 P~~~~yKVyIIDEvhm--Ls~~AfNALLKtLEEPP~~v~FILa 157 (462)
T PRK06305 117 PSKSQYKIYIIDEVHM--LTKEAFNSLLKTLEEPPQHVKFFLA 157 (462)
T ss_pred CCCCCEEEEEEECHHH--CCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8677505999815211--7999999999986189877499998
No 166
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.00094 Score=44.27 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=48.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHH------HHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998788999678999999971894895789------9999996001-45666677641344554103566555420232
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGD------MLRAEVDRNT-LLGKQVKGSMESGSLISDAIVNQVVCDRIRLP 75 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gd------llR~~~~~~s-~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~ 75 (201)
.+|.||+|+||+|.|+.+|+..+-.+-..++ ..+ .+.+++ +.-..+...-++| | +-+ .-+.+.+.-.
T Consensus 41 yLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~-~i~~g~~~DviEiDaasn~g--V--d~I-R~i~~~v~~~ 114 (563)
T PRK06674 41 YLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCL-GITNGSISDVLEIDAASNNG--V--DEI-RDIRDKVKFA 114 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCCCCCEEEECCCCCCC--H--HHH-HHHHHHHCCC
T ss_conf 4312899868999999999985799999988776687899-98558998779852555578--7--999-9999982648
Q ss_pred CC---CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 22---531786380111245788876665312522210355542
Q gi|254780240|r 76 DC---DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 (201)
Q Consensus 76 ~~---~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~ 116 (201)
+. .+-||||..=.=-. .++..++.....||..++++-+.
T Consensus 115 P~~~~yKV~IIDeah~Lt~--~A~NALLKtLEEPP~~viFILaT 156 (563)
T PRK06674 115 PSAVEYKVYIIDEVHMLSI--GAFNALLKTLEEPPGHVIFILAT 156 (563)
T ss_pred CCCCCEEEEEEECHHHCCH--HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 8678737999854563799--99999999863887564999965
No 167
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=97.07 E-value=0.00041 Score=46.53 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+|++.||||.||||.|++.-|+
T Consensus 178 HiiLYGPPGVGKTTaARl~LEe 199 (616)
T TIGR02903 178 HIILYGPPGVGKTTAARLALEE 199 (616)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 0785573388478999998762
No 168
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.07 E-value=0.00049 Score=46.03 Aligned_cols=28 Identities=43% Similarity=0.828 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCEE
Q ss_conf 69998788999678999999971-89489
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL-NVPQL 29 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~-~~~~i 29 (201)
.|++.||||+||++.|+.+|+.+ +.+.+
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~ 29 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVF 29 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf 98999899756999999999980798311
No 169
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.06 E-value=0.00042 Score=46.44 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=22.5
Q ss_pred EE-EECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 99-987889996789999999718948
Q gi|254780240|r 3 II-FLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 3 I~-i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
|+ |.|||||||+|.-+.|++.+|+.+
T Consensus 120 ~LLi~GPsGCgKsT~~k~LsKelg~~~ 146 (670)
T TIGR00602 120 ILLITGPSGCGKSTTIKILSKELGIKV 146 (670)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 788417558844789999988864456
No 170
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.05 E-value=0.00058 Score=45.55 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+.+|.||||+||+|.|..+|+.++.
T Consensus 38 hlLf~GPpG~GKTt~A~~lA~~l~~ 62 (337)
T PRK12402 38 HLVVYGPSGSGKTAAVRALARELYG 62 (337)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6988892984899999999999679
No 171
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.04 E-value=0.00051 Score=45.94 Aligned_cols=27 Identities=48% Similarity=0.757 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 699987889996789999999718948
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
||+++||-|||||=.|+=||+.+++|.
T Consensus 154 NILLiGPTGSGKTLLAqTLA~~L~VPf 180 (452)
T TIGR00382 154 NILLIGPTGSGKTLLAQTLARILNVPF 180 (452)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 624546888526899999998738874
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.00059 Score=45.54 Aligned_cols=26 Identities=50% Similarity=0.838 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 69998788999678999999971894
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
.++|+|||||||+|.+..++..++..
T Consensus 4 ~ill~G~~GsGKTtl~~~la~~~~~~ 29 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 89999999702999999999872668
No 173
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.03 E-value=0.003 Score=41.11 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=47.6
Q ss_pred EEEECCCCCCHHHHHHHHHH---HHCC--CEE----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCHHH----
Q ss_conf 99987889996789999999---7189--489----578999999960014566667764134455-----41035----
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ---KLNV--PQL----STGDMLRAEVDRNTLLGKQVKGSMESGSLI-----SDAIV---- 64 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~---~~~~--~~i----s~gdllR~~~~~~s~~g~~i~~~l~~G~lv-----pd~ii---- 64 (201)
++|.||||+||||.|...+. +-|= .++ +...++|.+ ..+|-.+++++++|.+. |.+.-
T Consensus 269 tLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a----~~~G~dl~~~~~~G~l~i~~~~p~~~~~~e~ 344 (501)
T PRK09302 269 ILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNA----TSWGIDLEEMERKGLLKIICARPESTGLEDH 344 (501)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH----HHCCCCHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 999889998889999999999986599089999967999999999----9739984888748947999837000598999
Q ss_pred HHHHHHHHCCCCCCCEEEECCC
Q ss_conf 6655542023222531786380
Q gi|254780240|r 65 NQVVCDRIRLPDCDSGFILDGY 86 (201)
Q Consensus 65 ~~li~~~l~~~~~~~g~ilDGF 86 (201)
...+.+.+++.. .+-+|||++
T Consensus 345 ~~~i~~~v~~~~-~~rVvIDsl 365 (501)
T PRK09302 345 LQIIKREIEEFK-PSRVAVDPL 365 (501)
T ss_pred HHHHHHHHHHCC-CCEEEECCH
T ss_conf 999999999729-989999580
No 174
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.02 E-value=0.00054 Score=45.76 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999878899967899999997189489
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
+|++.||||.||++.+..+|+.++...+
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~ 28 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFR 28 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9878989987699999999999599816
No 175
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.02 E-value=0.0011 Score=43.84 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=69.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--C------CH-HHHHHH
Q ss_conf 999878899967899999997-----189489578999999960014566667764134455--4------10-356655
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLI--S------DA-IVNQVV 68 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lv--p------d~-ii~~li 68 (201)
+++.|.||+||++.|.+++-. ....++|+-.=.++-++.-..+|-.+.+++.+|.+. | +. ....++
T Consensus 27 ~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~~~~L 106 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRDFL 106 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99986899878999999999998789869999943899999999998699817997579679996134335404578999
Q ss_pred HHHHCCC--CCCCEEEECCC-H---H--HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5420232--22531786380-1---1--12457888766653125222103555422125664233112
Q gi|254780240|r 69 CDRIRLP--DCDSGFILDGY-P---R--TVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 69 ~~~l~~~--~~~~g~ilDGF-P---R--t~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
.+-+... ...+-+|||-| | . +..++..|-..+... ..-..+|.+.++...+-+....+..
T Consensus 107 ~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l-~s~gktIilTv~p~~~~e~~l~~lr 174 (230)
T PRK08533 107 DKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRI-SSLNKVIILTANPKELPESVLLILR 174 (230)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 9997326643798999905318851677789999999999999-8589889999563313624544204
No 176
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.00 E-value=0.00069 Score=45.12 Aligned_cols=24 Identities=46% Similarity=0.883 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+++|.||||+||+|.|..+|+.+.
T Consensus 39 hlLf~GppG~GKTt~a~~la~~l~ 62 (318)
T PRK00440 39 HLLFAGPPGTGKTTAALALARELY 62 (318)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 698889599889999999999976
No 177
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.96 E-value=0.0095 Score=37.96 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=88.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----EECHHHHHHHHHHHHHHH-----HHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9998788999678999999971894-----895789999999600145-----666677641344554103566555420
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP-----QLSTGDMLRAEVDRNTLL-----GKQVKGSMESGSLISDAIVNQVVCDRI 72 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~-----~is~gdllR~~~~~~s~~-----g~~i~~~l~~G~lvpd~ii~~li~~~l 72 (201)
|+.+|-|+=||+-++++|...++|. .+++|..=|+....+... +..++... -.. ...-+...+
T Consensus 218 IVMVGLPARGKSYIAkKLtRYLnWiGi~tKVFNVGnYRR~~~~~~~~~~~p~~~~e~r~r~------A~~-a~~Dm~~wl 290 (664)
T PTZ00322 218 VIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRI------AKA-IAHDMTTFI 290 (664)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHEECCCCCCCCCCCCCCHHHHHHHH------HHH-HHHHHHHHH
T ss_conf 9997888776789999999987534876168640342001014775435887479999999------999-999999998
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH---
Q ss_conf 232225317863801112457888766653125-222103555--42212566423311232333455656789899---
Q gi|254780240|r 73 RLPDCDSGFILDGYPRTVDQAKSLHAFISNMDC-AIDAVIELR--VEDASMFKRIQVRVLEAIASEKSVRSDDKYDV--- 146 (201)
Q Consensus 73 ~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~-~~~~vi~L~--~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~--- 146 (201)
.+... --|+|+-=-|.+.-+.+.+.+.+.+. ..-.|++++ |+++.++++=..+. ....+||.++.
T Consensus 291 ~~ggg--VAIfDATNSTreRR~~Il~~i~e~g~~~~~KVlFVESICdDpeiIe~NIl~v-------K~~sPd~pE~a~~D 361 (664)
T PTZ00322 291 CKTDG--VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRA-------KEMFPGAPEDFVDR 361 (664)
T ss_pred HCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHC-------CCCCCCCHHHHHHH
T ss_conf 65990--8999588887999999999999727777645999998579889999987633-------56899998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCEEEECCC
Q ss_conf 999999999975699999996-7979999389
Q gi|254780240|r 147 FLKRIENYRKTILPLSSYYRD-MGCLYIIDGM 177 (201)
Q Consensus 147 i~~Rl~~y~~~~~pv~~~y~~-~~~l~~Idg~ 177 (201)
+++|++.|+..-+|+-+.-++ ...+..+||.
T Consensus 362 F~~RI~~YE~~YEpLd~~~DkdlSYIKIinG~ 393 (664)
T PTZ00322 362 YYEVIEQLEAVYKSLNPVTDCDLTYIRIEDTQ 393 (664)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
T ss_conf 99999998874105785555796069997387
No 178
>KOG2004 consensus
Probab=96.96 E-value=0.00047 Score=46.12 Aligned_cols=38 Identities=37% Similarity=0.677 Sum_probs=31.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHHH-HHH
Q ss_conf 99987889996789999999718--948957899999-996
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLRA-EVD 40 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~-~~~ 40 (201)
++|.||||.||+.+|+.+|..+| |..+|.|-+--. +|+
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred EEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHC
T ss_conf 99868998773218999999848746998536634277642
No 179
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=96.94 E-value=0.00036 Score=46.88 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
Q ss_conf 99987889996789999999718948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~ 31 (201)
|+++||||.|||=.|+-+|=.=+.|.+|+
T Consensus 95 VLLvGPPGTGKTLLAKAvAGEA~VPFF~i 123 (505)
T TIGR01241 95 VLLVGPPGTGKTLLAKAVAGEAGVPFFSI 123 (505)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 47317878424678875202588962474
No 180
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=96.93 E-value=0.00044 Score=46.34 Aligned_cols=21 Identities=43% Similarity=0.493 Sum_probs=18.6
Q ss_pred EECCCCCCHHHHHHHHHHHHC
Q ss_conf 987889996789999999718
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~ 25 (201)
++|||||||||.|+.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~ 21 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILP 21 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 989898988999999999999
No 181
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.91 E-value=0.00086 Score=44.49 Aligned_cols=37 Identities=32% Similarity=0.648 Sum_probs=29.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC----CCEECHHHHHHHHH
Q ss_conf 99987889996789999999718----94895789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN----VPQLSTGDMLRAEV 39 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~~~ 39 (201)
|++.||||+||+..|--+|+.+| |+.+|.+++...|+
T Consensus 68 iLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 68 ILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECC
T ss_conf 99978999768899999999858999821501332233100
No 182
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.002 Score=42.21 Aligned_cols=26 Identities=35% Similarity=0.701 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 99987889996789999999718948
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
.+|.||+|+||+|.|..+|+.++-.+
T Consensus 40 yLF~GP~GtGKts~ArifAkaLnC~~ 65 (557)
T PRK07270 40 YLFSGPRGTGKTSAAKIFAKAMNCPN 65 (557)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 42108998689999999999957999
No 183
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.90 E-value=0.0014 Score=43.26 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999878899967899999997-----18948957899999996001456666776413445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
+++.|+|||||+|.|..++-. -...++++-.--+.-+++-..+|-.+.+++.+|.+
T Consensus 35 ~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~~~G~L 95 (241)
T PRK06067 35 ILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDISDFFIWGYL 95 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCC
T ss_conf 9998079988799999999999867982999994289999999999839985999866970
No 184
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.90 E-value=0.00083 Score=44.59 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
||+|.|+||+||||...++++.+.
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~ 24 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLK 24 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 989978999889999999999998
No 185
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.89 E-value=0.0023 Score=41.84 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=76.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH----CC-CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 69998788999678999999971----89-48957899999996001456666776413445541035665554202322
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL----NV-PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD 76 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~----~~-~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~ 76 (201)
-|++.|-|||||+|+|..|..++ |. +.+==||.+|..+.++-.+.+. +...+-..+ ..+..+ +...
T Consensus 394 tiwlTGLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~R~~l~~dLgfs~~--dR~enirR~--~~va~~----~~~~- 464 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVVRKHLSSELGFSKE--DRDLNILRI--GFVASE----ITKN- 464 (568)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCHH--HHHHHHHHH--HHHHHH----HHHC-
T ss_conf 9998457888776999999999997189279995468887421557898988--999999999--999999----9858-
Q ss_pred CCCEEEE----CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCC--CCCCCCHHHHHH
Q ss_conf 2531786----380111245788876665312522210355542212566423311232-333455--656789899999
Q gi|254780240|r 77 CDSGFIL----DGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEA-IASEKS--VRSDDKYDVFLK 149 (201)
Q Consensus 77 ~~~g~il----DGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~-~~~~~~--~R~DD~~e~i~~ 149 (201)
.+++| .=|....++|..+ +.+.+ --+-|++++|.+++.+|=.+-.+.. ..|+.. ...||
T Consensus 465 --g~i~i~a~isP~~~~R~~~r~~---~~~~~--~f~ev~v~~ple~c~~RD~KGlY~ka~~G~i~~ftGi~~------- 530 (568)
T PRK05537 465 --GGIAICAPIAPYRATRREVREM---IEAFG--AFIEVYVATPIEVCEQRDRKGLYKKAREGKIKEFTGISD------- 530 (568)
T ss_pred --CCEEEEEECCCCHHHHHHHHHH---HCCCC--CEEEEEECCCHHHHHHCCCCHHHHHHHCCCCCCCCCCCC-------
T ss_conf --9789995069997999999998---52379--779999789899997728611778985799789866899-------
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCEEEECCC-CCHHHHHHHHHHHHHH
Q ss_conf 999999975699999996-7979999389-9889999999999999
Q gi|254780240|r 150 RIENYRKTILPLSSYYRD-MGCLYIIDGM-LDMDEVSRSIDSLLVS 193 (201)
Q Consensus 150 Rl~~y~~~~~pv~~~y~~-~~~l~~Idg~-~~~~eV~~~I~~~l~~ 193 (201)
-|+. .+--..||.+ .++++..++|...|+.
T Consensus 531 --------------pye~P~~pdl~idt~~~~~~~~v~~ii~~L~~ 562 (568)
T PRK05537 531 --------------PYEPPANPELVIDTTNITPDECAHKILLYLEE 562 (568)
T ss_pred --------------CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf --------------99999998079878999999999999999997
No 186
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0011 Score=43.78 Aligned_cols=149 Identities=22% Similarity=0.220 Sum_probs=77.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9998788999678999999971---89-4895789999999600145666677641344554103566555420232225
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCD 78 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~ 78 (201)
|+|.|.+||||+|+|..|++++ |. +++==||-+|.-..++-.+..+ +...+-..| -.+.+++.+ .
T Consensus 26 iW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e--dR~eniRRv--aevAkll~d----a--- 94 (197)
T COG0529 26 IWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE--DRIENIRRV--AEVAKLLAD----A--- 94 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCCHH--HHHHHHHHH--HHHHHHHHH----C---
T ss_conf 99646888878799999999999759758985574676500578897867--899999999--999999987----8---
Q ss_pred CEEE----ECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3178----638011124578887666531252221035554221256642331123233345565678989999999999
Q gi|254780240|r 79 SGFI----LDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENY 154 (201)
Q Consensus 79 ~g~i----lDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y 154 (201)
..++ |.=|-...+||..+. .+ ..-+=++++||.+++.+|=-+- .|
T Consensus 95 G~iviva~ISP~r~~R~~aR~~~---~~---~~FiEVyV~~pl~vce~RDpKG-------------------------LY 143 (197)
T COG0529 95 GLIVIVAFISPYREDRQMARELL---GE---GEFIEVYVDTPLEVCERRDPKG-------------------------LY 143 (197)
T ss_pred CEEEEEEEECCCHHHHHHHHHHH---CC---CCEEEEEECCCHHHHHHCCCHH-------------------------HH
T ss_conf 90899975173099999999972---76---8628999579899998618257-------------------------89
Q ss_pred HHHHHHHHH-------HHHH-CCCEEEECC-CCCHHHHHHHHHHHHHH
Q ss_conf 997569999-------9996-797999938-99889999999999999
Q gi|254780240|r 155 RKTILPLSS-------YYRD-MGCLYIIDG-MLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 155 ~~~~~pv~~-------~y~~-~~~l~~Idg-~~~~~eV~~~I~~~l~~ 193 (201)
+.--..-|+ -|+. .+--..+|+ ..++++-.++|..+|..
T Consensus 144 kKAr~GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 144 KKARAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999759877875778888899998267506657899999999999985
No 187
>PRK13764 ATPase; Provisional
Probab=96.88 E-value=0.00091 Score=44.34 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
|++-|+|||||+|.|+.||+.|.
T Consensus 262 ilIaG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 262 ILIAGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99977999977899999999998
No 188
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0056 Score=39.38 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=55.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-E---CHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-C
Q ss_conf 99987889996789999999718948-9---578999-9999600145666677641344554103566555420232-2
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-L---STGDML-RAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLP-D 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-i---s~gdll-R~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~-~ 76 (201)
.+|.|+.|.||+|.|+.+|+-+|-.. + -+|.+- ..+|.++.-.- +-+ ++...--.-+-+-+|+.+.-... .
T Consensus 41 ylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d--~~E-iDaAs~~~vdd~rel~~~~~y~p~~ 117 (717)
T PRK08853 41 YLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVD--LLE-IDAASRTKVEDTRELLDNVQYKPAR 117 (717)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCC--EEE-ECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 7610889888989999999986789999999788870267674478775--245-4056567889999999855548877
Q ss_pred C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHH
Q ss_conf 2-531786380111245788876665312522210355542------212566423
Q gi|254780240|r 77 C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRIQ 125 (201)
Q Consensus 77 ~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~~ 125 (201)
+ .+-||||-.- +---..|..++.....+|.+|+++-+. ..+++.|+.
T Consensus 118 ~~yKvyiiDEvH--mls~~afnAlLKtlEEPP~hv~FilaTT~~~kip~TilSRc~ 171 (717)
T PRK08853 118 GRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCL 171 (717)
T ss_pred CCEEEEEEECHH--HCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 854799983054--438999999987603787564899843873437388987654
No 189
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0054 Score=39.49 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
.+|.||+|+||+|.|..+|+.++-
T Consensus 39 YLFsGPrGvGKTt~ArifAkaLnC 62 (523)
T PRK08451 39 YLFSGLRGSGKTSSARIFSRALVC 62 (523)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 875789986889999999999759
No 190
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.87 E-value=0.0012 Score=43.69 Aligned_cols=123 Identities=23% Similarity=0.249 Sum_probs=59.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC----C--EECHHH-------HHHH--HH-HHHHHHHHHHH------HHHHCCCC--
Q ss_conf 999878899967899999997189----4--895789-------9999--99-60014566667------76413445--
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV----P--QLSTGD-------MLRA--EV-DRNTLLGKQVK------GSMESGSL-- 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~----~--~is~gd-------llR~--~~-~~~s~~g~~i~------~~l~~G~l-- 58 (201)
|-+.|+||+||+|.|..|+....- + -+-+.| .|.+ .+ .+|.+..-.+. ..+++|..
T Consensus 85 IgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v 164 (283)
T COG1072 85 IGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPDV 164 (283)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99605766557789999999996388987337871454546767752212200189985356899999999996599851
Q ss_pred -CC--CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -54--1035665554202322253178638011124578887666531252221035554221256642331123
Q gi|254780240|r 59 -IS--DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 59 -vp--d~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
+| +..+-..+-....-.+.-+=.|+.|- ++-|...-...+.. -.|+.|+++++.+.+.+|+..|...
T Consensus 165 ~aPvysh~~yD~vp~~~~v~~~pdIlI~EG~--nvLq~~~p~~~~sd---ffDfSIyvDa~~~~le~wyi~Rfl~ 234 (283)
T COG1072 165 FAPVYSHLIYDPVPDAFQVVPQPDILIVEGN--NVLQDGEPWLFLSD---FFDFSIYVDADEELLEERYIERFLK 234 (283)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCEEEEECH--HHHCCCCCCCCCCC---CCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 2432331102567885020589988999152--66258985111256---2217999369999999999999985
No 191
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.87 E-value=0.0016 Score=42.74 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=32.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHH
Q ss_conf 999878899967899999997189489578999999960
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR 41 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~ 41 (201)
|+|=|++|+||+|.|..||.++|++++-.-|-+|+.+..
T Consensus 265 ILIGGaSGvGKSTlAseLA~RLGI~~VIsTDsIREVMR~ 303 (492)
T PRK12337 265 VLLGGVSGTGKSVLAAELAYRLGITRVVPTDAIREVMRA 303 (492)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 996078886688899999996098810254479999998
No 192
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.002 Score=42.15 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC--CEECHHHHHHHHHHHHHHH
Q ss_conf 999878899967899999997189--4895789999999600145
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV--PQLSTGDMLRAEVDRNTLL 45 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~--~~is~gdllR~~~~~~s~~ 45 (201)
|++.||||.|||-.|+.+|.+.+- ..+.-.+|+++.+-.++-+
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHH
T ss_conf 276689997588999998720586699942199999983411699
No 193
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.83 E-value=0.0012 Score=43.69 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+|++.|+||+||||.++++|-.
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~ 23 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALL 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999827989899999999999
No 194
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=96.81 E-value=0.019 Score=36.06 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=85.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-HHHHH----HHHH-HHHHHHHHHHCCCCCCCHH-----HHHHHHHH
Q ss_conf 999878899967899999997189489578999-99996----0014-5666677641344554103-----56655542
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-RAEVD----RNTL-LGKQVKGSMESGSLISDAI-----VNQVVCDR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-R~~~~----~~s~-~g~~i~~~l~~G~lvpd~i-----i~~li~~~ 71 (201)
|||+||-|||||-.+=.|++.++..-||+-.+. =++++ +.|. .=+.|..++=.-.= |++- --..+.+.
T Consensus 2 i~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dild-p~e~y~~~~F~~~~~~~ 80 (307)
T TIGR00174 2 IVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILD-PSESYSAADFQTQALNA 80 (307)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCC-CCCCCCCHHHHHHHHHH
T ss_conf 67740885547789999887689578743502322378753578896875349815851347-12003708899999999
Q ss_pred HCC---------CCCCCEE----EECCCHHHHHH-HH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 023---------2225317----86380111245-78----887666531252221035554221256642331123233
Q gi|254780240|r 72 IRL---------PDCDSGF----ILDGYPRTVDQ-AK----SLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133 (201)
Q Consensus 72 l~~---------~~~~~g~----ilDGFPRt~~Q-a~----~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~ 133 (201)
|.. ..+..+| +++||+++..- -+ .++...+..+...-+ ..|.- +||..
T Consensus 81 ~~~i~~~Gkipl~VGGT~lY~k~l~~gl~~~~~~~~~~~r~~~~~~~~~~g~~~ly-~~L~~-------------~DP~~ 146 (307)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSAEDKLIRESLEILAERQGKSFLY-KELKK-------------VDPVA 146 (307)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH-HHHHH-------------CCHHH
T ss_conf 99998569834886857889999971477775556505799999999854915788-87775-------------07698
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----EEEECCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 3455656789899999999999975699999996797-----9999389-9889999999999999998
Q gi|254780240|r 134 SEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGC-----LYIIDGM-LDMDEVSRSIDSLLVSVRK 196 (201)
Q Consensus 134 ~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~-----l~~Idg~-~~~~eV~~~I~~~l~~~~k 196 (201)
.... .+. +.--+.|=|++|+..-.|+-+++++++. .+.|=.. .+.+..++.|..-++.+-+
T Consensus 147 a~~i-hPN-D~~R~~RaLEvfY~TG~~~Se~~~~~~~~L~~~~v~~~l~~~~~e~L~~RI~~R~~~Ml~ 213 (307)
T TIGR00174 147 AAKI-HPN-DTRRVKRALEVFYATGKPISELFKEQKKELFYNIVQIGLAPLEREALHERIEQRVHEMLE 213 (307)
T ss_pred HHHH-CCC-CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9721-776-147898999988750786566640366654146677763005864567789999999998
No 195
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.80 E-value=0.00076 Score=44.85 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=9.8
Q ss_pred EECCCCCCHHHHHHHHHHHH
Q ss_conf 98788999678999999971
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~ 24 (201)
|+||+|+||||.+.+||.+|
T Consensus 199 lvGPTGVGKTTTiAKLAa~~ 218 (282)
T TIGR03499 199 LVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 97788875788999999999
No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0048 Score=39.80 Aligned_cols=106 Identities=17% Similarity=0.291 Sum_probs=53.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEECHHHHH-----HHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 99878899967899999997189489578999-----9999600145-6666776413445541035665554202322-
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDML-----RAEVDRNTLL-GKQVKGSMESGSLISDAIVNQVVCDRIRLPD- 76 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~is~gdll-----R~~~~~~s~~-g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~- 76 (201)
+|.||-|.||||.|+.+|+.++..+-.+++-. ..++..++-. --+|...-+. .-+-+-++. +...-.+
T Consensus 42 lfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~----gVddiR~i~-e~v~y~P~ 116 (515)
T COG2812 42 LFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNT----GVDDIREII-EKVNYAPS 116 (515)
T ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCC----CHHHHHHHH-HHHCCCCC
T ss_conf 5137777671049999999956889877772253166686514886410113644454----867999999-87246886
Q ss_pred -C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -2-531786380111245788876665312522210355542
Q gi|254780240|r 77 -C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 (201)
Q Consensus 77 -~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~ 116 (201)
+ .+-||||-- .+---.+|..++.....||.+|+++-+.
T Consensus 117 ~~ryKVyiIDEv--HMLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEV--HMLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred CCCCEEEEEECH--HHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 666418998318--7643788888751113686674899853
No 197
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0018 Score=42.56 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC--EECHHHHHHH
Q ss_conf 69998788999678999999971894--8957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP--QLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~--~is~gdllR~ 37 (201)
.++|.||||+||+..|+.+|...+.+ .+..++++-.
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 69998899975899999987544982488433555407
No 198
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.76 E-value=0.0013 Score=43.28 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
|+|+||+|+||||-+.+||.+|
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
No 199
>PRK10416 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.0042 Score=40.21 Aligned_cols=47 Identities=28% Similarity=0.495 Sum_probs=34.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC---C-CEECHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99987889996789999999718---9-4895789999999600-1456666
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN---V-PQLSTGDMLRAEVDRN-TLLGKQV 49 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~---~-~~is~gdllR~~~~~~-s~~g~~i 49 (201)
|+++|--||||||-+.+||.+|. . +-+..+|.+|.+.-.+ ..+|.++
T Consensus 298 Il~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~ 349 (499)
T PRK10416 298 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 349 (499)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 9997478787898999999999977995378840667568999999984245
No 200
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=96.75 E-value=0.0034 Score=40.77 Aligned_cols=126 Identities=15% Similarity=0.212 Sum_probs=67.9
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHCCCEECHHHH--HHHHHHHHH--HHHHHH----HHHH-----HCCCCCCCHHHHH
Q ss_conf 9699-987889996789999999718948957899--999996001--456666----7764-----1344554103566
Q gi|254780240|r 1 MRII-FLGPPGSGKGTQACRLSQKLNVPQLSTGDM--LRAEVDRNT--LLGKQV----KGSM-----ESGSLISDAIVNQ 66 (201)
Q Consensus 1 m~I~-i~G~PGsGK~T~a~~la~~~~~~~is~gdl--lR~~~~~~s--~~g~~i----~~~l-----~~G~lvpd~ii~~ 66 (201)
|++. |+||-|+||+..|-.||+++|.+.||.... .++ +.-+| +...+. +-|+ .+|.+ +.+...+
T Consensus 1 m~l~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~y~e-l~igs~rp~~~El~gT~RiYL~~R~l~~Gii-~a~eA~~ 78 (232)
T pfam01745 1 MGLYLIWGATCTGKTAEAIALAKETGWPVIVLDRVQCCSQ-LATGSGRPLPAELQGTRRIYLDNRPLSEGII-DAEEAHD 78 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHC-CCCCCCCCCHHHHCCCCEEEECCCCCCCCCC-CHHHHHH
T ss_conf 9268997887777169999999995997796203443001-1367789997996575269861673434664-8899999
Q ss_pred HHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHH-HHCCCCCCHHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf 55542023222531786380111245788876665-31252221035554-2212566423311232
Q gi|254780240|r 67 VVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFIS-NMDCAIDAVIELRV-EDASMFKRIQVRVLEA 131 (201)
Q Consensus 67 li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~-~~~~~~~~vi~L~~-~~~~~~~R~~~R~~~~ 131 (201)
.+..++.......|+||.|=--++- +.+..-.- ..+- .-.|..+.+ +.+..++|...|..+.
T Consensus 79 ~Li~~V~~~~~~~glILEGGSISLl--~~ma~~~~w~~~f-~w~v~r~~l~d~~~f~~ra~~Rv~~M 142 (232)
T pfam01745 79 RLIAEVTSHKDEGGVILEGGSISLL--KRMAQSPYWNAGF-PWHVKRMRLPDRDVFLAQAKARVRQM 142 (232)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHHH--HHHHHCHHHCCCC-EEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999996046678668727509999--9997573414896-48999974798789999999999986
No 201
>KOG0734 consensus
Probab=96.74 E-value=0.0062 Score=39.13 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
Q ss_conf 99987889996789999999718948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~ 31 (201)
|+++||||.||+-.|+.+|-.-|++.+.+
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734 340 VLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEEC
T ss_conf 38768999755699998605568974741
No 202
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=96.74 E-value=0.0011 Score=43.79 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH--CCCE
Q ss_conf 69998788999678999999971--8948
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL--NVPQ 28 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~--~~~~ 28 (201)
++.++|+.||||+|.||+|..-| .=.|
T Consensus 502 k~tiVGmSGSGKsTLaKLLV~FfePQ~~s 530 (710)
T TIGR01193 502 KITIVGMSGSGKSTLAKLLVGFFEPQAES 530 (710)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 48997367974899998752035899887
No 203
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=96.72 E-value=0.0015 Score=43.01 Aligned_cols=39 Identities=28% Similarity=0.586 Sum_probs=30.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC----CCEECHHHHHHHHHHH
Q ss_conf 99987889996789999999718----9489578999999960
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN----VPQLSTGDMLRAEVDR 41 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~~~~~ 41 (201)
|++.||||+||+..|--+|+.+| |++++..+++-.|+++
T Consensus 53 iLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kK 95 (395)
T pfam06068 53 VLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKK 95 (395)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCH
T ss_conf 9987799988899999999974879973450011121256548
No 204
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.72 E-value=0.00099 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9998788999678999999971894
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
-+|.||+|.||||.|+.+|+.++-.
T Consensus 46 ylf~G~rG~GKTt~Ari~ak~lnc~ 70 (507)
T PRK06645 46 YLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 7745879978899999999996799
No 205
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.72 E-value=0.0012 Score=43.63 Aligned_cols=104 Identities=22% Similarity=0.267 Sum_probs=57.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCC-EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9998788999678999999971---894-895789999999600145666677641344554103566555420232225
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NVP-QLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCD 78 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~~-~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~ 78 (201)
|+|.|+.||||||+|.-|.+++ |+- ++==||-+|.-..+ +||--=++.-.+-..|. .|..|+ .+
T Consensus 22 lWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDnvR~gL~~--dLGFS~~DR~eNIRRig--EVa~L~--------~~ 89 (187)
T TIGR00455 22 LWLTGLSGSGKSTIANALEKKLEKKGYRVYVLDGDNVRHGLNK--DLGFSEEDRKENIRRIG--EVAKLL--------VR 89 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCC--CCCCCHHHHCCCCCEEH--HHHHHH--------HH
T ss_conf 8511688563579999999999966974999758634247788--88888567056883532--646777--------64
Q ss_pred CE-EEECC----CHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHH
Q ss_conf 31-78638----0111245788876665312522210-3555422125664
Q gi|254780240|r 79 SG-FILDG----YPRTVDQAKSLHAFISNMDCAIDAV-IELRVEDASMFKR 123 (201)
Q Consensus 79 ~g-~ilDG----FPRt~~Qa~~l~~~l~~~~~~~~~v-i~L~~~~~~~~~R 123 (201)
+| ++|-- |--..++|..+.... +. .++ |+.+||.+++.+|
T Consensus 90 ~G~i~ltsfISPyR~~R~~vR~~~~~~---Gl--~F~Evfv~~PL~vcE~R 135 (187)
T TIGR00455 90 NGVIVLTSFISPYRADRQMVRELIEEG---GL--EFIEVFVKCPLEVCEQR 135 (187)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHCC---CE--EEEEEECCCCHHHHCCC
T ss_conf 793899842177666789998875405---73--68997217886863268
No 206
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0081 Score=38.41 Aligned_cols=36 Identities=31% Similarity=0.610 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH---HHCC--CEECHHHHHHH
Q ss_conf 699987889996789999999---7189--48957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQ---KLNV--PQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~---~~~~--~~is~gdllR~ 37 (201)
+++|+||||+||+..|.-|+. ++|+ ..+++.+++++
T Consensus 107 nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 28998999987999999999999983984999885999999
No 207
>CHL00176 ftsH cell division protein; Validated
Probab=96.69 E-value=0.0013 Score=43.35 Aligned_cols=33 Identities=30% Similarity=0.669 Sum_probs=27.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC--HHHHH
Q ss_conf 9998788999678999999971894895--78999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS--TGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is--~gdll 35 (201)
|++.||||.|||-.|+-+|-.-|.|.+| -.++.
T Consensus 213 vLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~ 247 (631)
T CHL00176 213 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 247 (631)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHH
T ss_conf 89889899878899999856558846998837855
No 208
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.0033 Score=40.84 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-E---CHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCC-----------CHHHHH
Q ss_conf 99987889996789999999718948-9---57899-99999600145666677641344554-----------103566
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-L---STGDM-LRAEVDRNTLLGKQVKGSMESGSLIS-----------DAIVNQ 66 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-i---s~gdl-lR~~~~~~s~~g~~i~~~l~~G~lvp-----------d~ii~~ 66 (201)
-+|.|+.|+||+|.|+.+|+.++-.. + -+|.. -..++ ++|..+. -+-+-+
T Consensus 41 ylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i--------------~~g~~~d~~eidaas~~~vd~~re 106 (643)
T PRK07994 41 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI--------------EQGRFVDLIEIDAASRTKVEDTRD 106 (643)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--------------HCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 874589988888999999999679999999978767768988--------------658988758863677788899999
Q ss_pred HHHHHHCCCC--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHH
Q ss_conf 5554202322--2-531786380111245788876665312522210355542------212566423
Q gi|254780240|r 67 VVCDRIRLPD--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRIQ 125 (201)
Q Consensus 67 li~~~l~~~~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~~ 125 (201)
++ +.+.-.+ + .+-||||-.- +---.+|..++.....+|.+|+++-+. ..+++.|+.
T Consensus 107 l~-~~~~y~p~~~r~kvyiidEvh--mls~~afnalLKtlEePp~hv~filaTT~~~k~p~TilSRC~ 171 (643)
T PRK07994 107 LL-DNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCL 171 (643)
T ss_pred HH-HHCCCCCCCCCEEEEEEECHH--HCCHHHHHHHHHHHCCCCHHCEEEEECCCHHHCCHHHHHHHH
T ss_conf 99-844668877853699972210--158999999998623786100899860774548478997776
No 209
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.66 E-value=0.0021 Score=42.05 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHH
Q ss_conf 69998788999678999999971894895789999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV 39 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~ 39 (201)
||+|+||.-+||||.++.||++|+-+..- +.-|+.+
T Consensus 233 kVvIlG~ESTGKTTL~~~LA~~ynT~~v~--EYgReY~ 268 (411)
T PRK08099 233 TVAILGGESSGKSTLVNKLANIFNTTSAW--EYGRDYV 268 (411)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCH--HHHHHHH
T ss_conf 89998999888899999999997899518--9899999
No 210
>KOG3308 consensus
Probab=96.66 E-value=0.053 Score=33.30 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHCCC-EECHHHHHH--HHHH--HH------H-------HHHHHHHHHHHCCCCC
Q ss_conf 969998---788999678999999971894-895789999--9996--00------1-------4566667764134455
Q gi|254780240|r 1 MRIIFL---GPPGSGKGTQACRLSQKLNVP-QLSTGDMLR--AEVD--RN------T-------LLGKQVKGSMESGSLI 59 (201)
Q Consensus 1 m~I~i~---G~PGsGK~T~a~~la~~~~~~-~is~gdllR--~~~~--~~------s-------~~g~~i~~~l~~G~lv 59 (201)
||.+|+ |..-|||+|.|+.|...|+-. -|+--|.+. +|+. .+ . .+...++..|.+-+-+
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 61899986424678776899999987368746402234675534211237721110131420999987888885075556
Q ss_pred CC---HHHHHH----HHHHHCCCCCC-CEEEECCCHH--HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 41---035665----55420232225-3178638011--12457888766653125222103555422125664233112
Q gi|254780240|r 60 SD---AIVNQV----VCDRIRLPDCD-SGFILDGYPR--TVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 60 pd---~ii~~l----i~~~l~~~~~~-~g~ilDGFPR--t~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
|+ .++..- ........... .-+++|||=- +..|.. ..|..|++..+-+++..|-..|..
T Consensus 82 ~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~-----------~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308 82 PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD-----------LFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECCHHHH-----------HHHHHEEEECCHHHHHHHHCCCCC
T ss_conf 337565411667777764227520027679983614772632664-----------555210220439999876236544
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 32333455656789899999999999975699999996797999938998899999999999
Q gi|254780240|r 130 EAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 (201)
Q Consensus 130 ~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l 191 (201)
.++..-.+. |. .+.-++..+.+.. -|....-...+||+-+-+.....|...+
T Consensus 151 y~p~~tgyf---d~--~~~P~Y~~~~~~~-----~d~~~h~~~flngdvs~e~~~~~v~~~i 202 (225)
T KOG3308 151 YPPDDTGYF---DP--VVWPHYEKNFEEA-----RDRSRHDSLFLNGDVSEEKLDDKVNESI 202 (225)
T ss_pred CCCCCCCCC---CC--CCCHHHHHHHHHH-----HHHCCCCEEEECCCCHHHHCHHHHHHHH
T ss_conf 777877523---57--6460898878888-----7503443155525201322325654301
No 211
>KOG0733 consensus
Probab=96.65 E-value=0.0016 Score=42.74 Aligned_cols=98 Identities=21% Similarity=0.377 Sum_probs=54.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC--HHHHHHHHHHHHHHHH-----HHHHH-------------H----HHCCCC
Q ss_conf 9998788999678999999971894895--7899999996001456-----66677-------------6----413445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS--TGDMLRAEVDRNTLLG-----KQVKG-------------S----MESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is--~gdllR~~~~~~s~~g-----~~i~~-------------~----l~~G~l 58 (201)
|+++||||||||-.|+.+|..-|.-.|| --+||-..+- .|+.+ ++++. . =+.|.-
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG-ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~ 626 (802)
T KOG0733 548 VLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG-ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS 626 (802)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCH
T ss_conf 3875799861889999985030475476238899987742-378999999998623898389851112027655777750
Q ss_pred CCCHHHHHHHHHHHCCCCCCCE-------------------------EEECCCHHHHHHHHHHHHHHHH
Q ss_conf 5410356655542023222531-------------------------7863801112457888766653
Q gi|254780240|r 59 ISDAIVNQVVCDRIRLPDCDSG-------------------------FILDGYPRTVDQAKSLHAFISN 102 (201)
Q Consensus 59 vpd~ii~~li~~~l~~~~~~~g-------------------------~ilDGFPRt~~Qa~~l~~~l~~ 102 (201)
+++.++.+|+.+- -....++| .++-|||-..+.+..|.....+
T Consensus 627 ~s~RvvNqLLtEl-DGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733 627 VSSRVVNQLLTEL-DGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHHH-CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 5899999999873-1621114259995068976555655187755742450699878899999998535
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.59 E-value=0.0034 Score=40.72 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE--CHHHHHHHHHHHHH
Q ss_conf 6999878899967899999997189489--57899999996001
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL--STGDMLRAEVDRNT 43 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i--s~gdllR~~~~~~s 43 (201)
+|+|.||||.||+..|+.||...+.+.+ ..-.|+-+.+-.++
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdga 196 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA 196 (368)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 16877899964879999872545785487116888887743598
No 213
>KOG0707 consensus
Probab=96.59 E-value=0.022 Score=35.63 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEECCCCCHHHHHHHHHHHHHH
Q ss_conf 422125664233112323334556567898999999999999756999999967979-9993899889999999999999
Q gi|254780240|r 115 VEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCL-YIIDGMLDMDEVSRSIDSLLVS 193 (201)
Q Consensus 115 ~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l-~~Idg~~~~~eV~~~I~~~l~~ 193 (201)
.+...+.+|+..|.. |+++.+.+|+..-..++.+..+ .+.. ..+.+..+.++.+.....++..
T Consensus 158 ps~~~~e~rl~~rgt------------e~~~~l~~r~~sa~~e~~~~~~----~g~~d~~~~ns~~lee~~kel~~~~~~ 221 (231)
T KOG0707 158 PSIKILEERLRARGT------------ETEESLLKRLKSAEEEFEILEN----SGSFDLVIVNSDRLEEAYKELEIFISS 221 (231)
T ss_pred CCCHHHHHHHHCCCC------------CHHHHHHHHHHHHHHHHCCCCC----CCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 860158887541474------------0199999998865653202347----763452121788624545554323467
Q ss_pred HHHH
Q ss_conf 9987
Q gi|254780240|r 194 VRKK 197 (201)
Q Consensus 194 ~~k~ 197 (201)
-.++
T Consensus 222 ~~~~ 225 (231)
T KOG0707 222 DDKE 225 (231)
T ss_pred HHHH
T ss_conf 7776
No 214
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0027 Score=41.36 Aligned_cols=29 Identities=38% Similarity=0.668 Sum_probs=26.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEC
Q ss_conf 69998788999678999999971894895
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLS 30 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is 30 (201)
||+++||.|||||-+|++||+-.+.|.+.
T Consensus 52 NILmIGPTGvGKTeIARrLAkl~~aPFvk 80 (442)
T PRK05201 52 NILMIGPTGVGKTEIARRLAKLANAPFIK 80 (442)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 16887888866789999999984898587
No 215
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.58 E-value=0.0039 Score=40.40 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=55.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---C-CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9998788999678999999971---8-94895789999999600145666677641344554103566555420232225
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---N-VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCD 78 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~-~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~ 78 (201)
|+|.|.|||||+|+|..|.+++ | -+++==||-+|..+.++-.+ -..+..++-..+ -.+..++.+
T Consensus 446 iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LDGd~lR~gl~~dlgf--~~~dR~enirR~--~eva~l~~~-------- 513 (613)
T PRK05506 446 VWFTGLSGSGKSTIANLVERRLHALGRHTYVLDGDNVRHGLNRDLGF--TDADRVENIRRV--AEVARLMAD-------- 513 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCC--CHHHHHHHHHHH--HHHHHHHHH--------
T ss_conf 99977898974799999999999779987998808987410457797--989999999999--999999986--------
Q ss_pred CE-EE----ECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 31-78----63801112457888766653125222103555422125664
Q gi|254780240|r 79 SG-FI----LDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 79 ~g-~i----lDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
.| ++ |.=|....++|..+ +.. ..-+-++++||.+++.+|
T Consensus 514 aG~i~i~a~iSp~~~~R~~~r~~---~~~---~~f~Ev~v~~~le~c~~R 557 (613)
T PRK05506 514 AGLIVLVSFISPFREERELARAL---IGE---GEFVEVFVDTPLEVCEAR 557 (613)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH---CCC---CCEEEEEEECCHHHHHHC
T ss_conf 89889997588998999999975---788---878999990899999762
No 216
>KOG0731 consensus
Probab=96.56 E-value=0.0019 Score=42.30 Aligned_cols=29 Identities=34% Similarity=0.693 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
Q ss_conf 99987889996789999999718948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~ 31 (201)
++++||||+|||-.|+-+|-.=|+|.+|+
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731 347 VLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 17878999867899998853058964641
No 217
>KOG1969 consensus
Probab=96.56 E-value=0.0022 Score=41.90 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=24.6
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHCCCEEC
Q ss_conf 6999-8788999678999999971894895
Q gi|254780240|r 2 RIIF-LGPPGSGKGTQACRLSQKLNVPQLS 30 (201)
Q Consensus 2 ~I~i-~G~PGsGK~T~a~~la~~~~~~~is 30 (201)
||++ .||||-||+|.|..+|.+-|+..+.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 068753688787247999999862854887
No 218
>KOG1533 consensus
Probab=96.55 E-value=0.0012 Score=43.59 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
-+++|||||||+|.|--..+-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~f 25 (290)
T KOG1533 5 QVVIGPPGSGKSTYCNGMSQF 25 (290)
T ss_pred EEEECCCCCCCCCHHHHHHHH
T ss_conf 688769999853113209999
No 219
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.52 E-value=0.0019 Score=42.30 Aligned_cols=33 Identities=30% Similarity=0.682 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH--HHHH
Q ss_conf 99987889996789999999718948957--8999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST--GDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~--gdll 35 (201)
|+++||||+|||-.|+.+|-.-+.+.+|+ .+++
T Consensus 188 vLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~ 222 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHH
T ss_conf 17779899877899999864559808997847730
No 220
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.52 E-value=0.0034 Score=40.78 Aligned_cols=28 Identities=46% Similarity=0.716 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999878899967899999997189489
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
||+++||.|||||-.|+.||+.++.|..
T Consensus 111 NILliGPTG~GKTlla~tLAk~l~vPF~ 138 (411)
T PRK05342 111 NILLIGPTGSGKTLLAQTLARILNVPFA 138 (411)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 3899899997788999999998699989
No 221
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.0027 Score=41.36 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=56.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHHH-HHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99987889996789999999718948----9578999-99996001456-666776413445541035665554202322
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDML-RAEVDRNTLLG-KQVKGSMESGSLISDAIVNQVVCDRIRLPD 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdll-R~~~~~~s~~g-~~i~~~l~~G~lvpd~ii~~li~~~l~~~~ 76 (201)
.+|.|+.|+||+|.|+.||+.++-.. --+|.+- ..+|.++.-.- .+|...-+.| -+-+-+++.+ ..-.+
T Consensus 41 ylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~~D~~EiDaAs~~~----vdd~R~l~~~-~~y~P 115 (704)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTG----IDNIREVLEN-AQYAP 115 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCC----HHHHHHHHHH-CCCCC
T ss_conf 750278987888999999999679999999978777767878558998747742454458----8999999985-34688
Q ss_pred --C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH------HHHHHHHH
Q ss_conf --2-5317863801112457888766653125222103555422------12566423
Q gi|254780240|r 77 --C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVED------ASMFKRIQ 125 (201)
Q Consensus 77 --~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~------~~~~~R~~ 125 (201)
+ .+-||||..=. ---.+|..++.....+|.+|+|+-+.- .+++.|+.
T Consensus 116 ~~~~yKVyiiDEvhm--Ls~~afNAlLKtLEEPP~~v~FilaTTdp~Klp~TIlSRC~ 171 (704)
T PRK08691 116 TAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCL 171 (704)
T ss_pred CCCCEEEEEEECHHH--CCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 678535999831544--38999999998614797560899854884647589998887
No 222
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.52 E-value=0.0022 Score=42.00 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
|+|+||+||||+|+++.|.+.+.
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999998899999999985198
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.0078 Score=38.49 Aligned_cols=35 Identities=34% Similarity=0.649 Sum_probs=28.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCCEECHHHHHHH
Q ss_conf 9998788999678999999971-----8948957899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL-----NVPQLSTGDMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~ 37 (201)
++|.||||+||+..|.-||..+ ...++++.|||+.
T Consensus 99 LlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~ 138 (242)
T PRK07952 99 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 138 (242)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 7997899997899999999999987994999779999999
No 224
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.45 E-value=0.0027 Score=41.35 Aligned_cols=34 Identities=38% Similarity=0.458 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHHH
Q ss_conf 99987889996789999999718-----94895789999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDMLR 36 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdllR 36 (201)
|-|.||+||||||.|..|++.++ ...||+-+-.+
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 899898977899999999999846488539995466645
No 225
>KOG0735 consensus
Probab=96.44 E-value=0.0042 Score=40.17 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHH--HHHHHH
Q ss_conf 999878899967899999997189489578--999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTG--DMLRAE 38 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~g--dllR~~ 38 (201)
|++.||||+||+-.|..+|...++-.||+. +||-+.
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735 704 ILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHH
T ss_conf 58877999857888888885378059982588999987
No 226
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=96.44 E-value=0.0025 Score=41.60 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+.++||.||||+|++.+|..-|.
T Consensus 562 vALVGPsGsGKStvaaLL~n~Y~ 584 (770)
T TIGR00958 562 VALVGPSGSGKSTVAALLQNLYQ 584 (770)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99865899839999999985578
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.028 Score=35.06 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=51.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 99987889996789999999718948----957899-999996001456666776413445541035665554202322-
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDM-LRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD- 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdl-lR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~- 76 (201)
.+|.|+.|.||||.|+.+|+-+|-.. --+|.+ -..+|.+++..--. + |+.-..---+-+-+|+.+......
T Consensus 41 ylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~d~i--E-iDaAS~~~vd~~r~l~~~~~y~p~~ 117 (816)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV--E-MDAASNRGVDEMAALLERAVYAPVD 117 (816)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEE--E-EECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 751178988888999999998678999998978775557877558877547--8-6355435768999999862247866
Q ss_pred C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 2-531786380111245788876665312522210355542
Q gi|254780240|r 77 C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 (201)
Q Consensus 77 ~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~ 116 (201)
+ .+-||||-.= +---..|..++.....+|.+|+|+-+.
T Consensus 118 ~r~KvyiiDEvH--mls~~afnalLKtlEepP~hv~FilaT 156 (816)
T PRK07003 118 ARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (816)
T ss_pred CCEEEEEEECHH--HCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 744799984154--339999999998403798664899955
No 228
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.016 Score=36.50 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=55.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC----HHHH-HHHHHHHHH-----------HHH-HHHHHHHHCCCCCCCHHHH
Q ss_conf 9998788999678999999971894895----7899-999996001-----------456-6667764134455410356
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS----TGDM-LRAEVDRNT-----------LLG-KQVKGSMESGSLISDAIVN 65 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is----~gdl-lR~~~~~~s-----------~~g-~~i~~~l~~G~lvpd~ii~ 65 (201)
.+|.|+-|.||+|+|+.+|+-++-.+=- +|.+ -..+|.++. ..| ..+++.+++....|
T Consensus 41 ~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p----- 115 (663)
T PRK08770 41 FLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMP----- 115 (663)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC-----
T ss_conf 762279988888999999998678999999978778778988548988658864676588899999998443588-----
Q ss_pred HHHHHHHCCCCC-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHH
Q ss_conf 655542023222-531786380111245788876665312522210355542------212566423
Q gi|254780240|r 66 QVVCDRIRLPDC-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRIQ 125 (201)
Q Consensus 66 ~li~~~l~~~~~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~~ 125 (201)
..+ -+-||||.. .+---..|..++.....+|.+|.|+-+. ..+++.|+.
T Consensus 116 ---------~~~~~kvy~idev--hmls~~~fna~lktleepp~~v~f~~att~~~k~p~t~~src~ 171 (663)
T PRK08770 116 ---------SRGKFKVYLIDEV--HMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCL 171 (663)
T ss_pred ---------CCCCEEEEEEECH--HHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHH
T ss_conf ---------7774369997004--3328999999987402786442899854873337489998887
No 229
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.42 E-value=0.0031 Score=41.00 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=44.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC----CCHHHHHHHHHHHC
Q ss_conf 99987889996789999999718948----957899999996001456666776413-4455----41035665554202
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDMLRAEVDRNTLLGKQVKGSMES-GSLI----SDAIVNQVVCDRIR 73 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdllR~~~~~~s~~g~~i~~~l~~-G~lv----pd~ii~~li~~~l~ 73 (201)
|.++||+|+||||-+.+||.+|.... +-+-|-.|-... .+++.|-+. |-.+ ..+-...++.+.++
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~------eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~ 77 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAI------EQLKQLAERLGVPVFGSGTGSDPAAVAFDAVE 77 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH------HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 999899999889999999999997799289997587768899------99999998639817814877787899999999
Q ss_pred CC--CCCCEEEEC--C-CHHHHHHHHHHHHHHH
Q ss_conf 32--225317863--8-0111245788876665
Q gi|254780240|r 74 LP--DCDSGFILD--G-YPRTVDQAKSLHAFIS 101 (201)
Q Consensus 74 ~~--~~~~g~ilD--G-FPRt~~Qa~~l~~~l~ 101 (201)
.. ...+-++|| | -|++..+.+.+.++..
T Consensus 78 ~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~ 110 (196)
T pfam00448 78 KAKAENYDVVLVDTAGRLQNDKNLMDELKKIKR 110 (196)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 988468999999899987476778999999985
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.014 Score=36.95 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=57.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEC---------HHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-----------C
Q ss_conf 9998788999678999999971894895---------78999-9999600145666677641344554-----------1
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS---------TGDML-RAEVDRNTLLGKQVKGSMESGSLIS-----------D 61 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is---------~gdll-R~~~~~~s~~g~~i~~~l~~G~lvp-----------d 61 (201)
-+|.|+-|.||+|.|+.+|+-++-.+-. +|.+- ..+|. +|..+. -
T Consensus 41 ylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~--------------~g~~~d~~EiDaas~~~v 106 (721)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEID--------------AGRFVDYIEMDAASNRGV 106 (721)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH--------------CCCCCCEEEEECCCCCCH
T ss_conf 750279988898999999999768998667898788787765468775--------------689876477436767888
Q ss_pred HHHHHHHHHHHCCCC--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHH
Q ss_conf 035665554202322--2-531786380111245788876665312522210355542------212566423
Q gi|254780240|r 62 AIVNQVVCDRIRLPD--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRIQ 125 (201)
Q Consensus 62 ~ii~~li~~~l~~~~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~~ 125 (201)
+-+-+|+ +...-.+ + -+-||||.. .+--...|..++.....+|.+|+|+-+. ..+++.|+.
T Consensus 107 ~~~r~l~-~~~~y~P~~~~~KvyiiDev--hmls~~afnalLKtlEePP~hv~FilaTT~~~Kip~TilSRc~ 176 (721)
T PRK12323 107 DEMAQLL-DQAVYAPTAGRFKVYMIDEV--HMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL 176 (721)
T ss_pred HHHHHHH-HHCCCCCCCCCEEEEEEECC--CCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 9999999-85455887664469998540--0058999999998401797553899943863448588987765
No 231
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.39 E-value=0.0042 Score=40.21 Aligned_cols=31 Identities=35% Similarity=0.584 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHH
Q ss_conf 9998788999678999999971894895789
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGD 33 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gd 33 (201)
|+|+||-|||||..|-.||++++..-||+-.
T Consensus 7 i~i~GpTasGKs~la~~la~~~~~eIIsaDS 37 (304)
T PRK00091 7 IVLVGPTASGKTALAIELAKRLNGEIISVDS 37 (304)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEECH
T ss_conf 9998988658999999999987998994126
No 232
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.38 E-value=0.0031 Score=41.05 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
|++-||||+||+|-|+.||+.|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 69956999974689999999998
No 233
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=96.37 E-value=0.0023 Score=41.83 Aligned_cols=32 Identities=44% Similarity=0.779 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH
Q ss_conf 6999878899967899999997189489578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdll 35 (201)
+++++||||+||++.|+++..-+ +-++..+.+
T Consensus 24 ~lLl~GpPG~GKTmlA~rl~~iL--P~l~~~e~l 55 (207)
T pfam01078 24 NLLMIGPPGSGKTMLAKRLPGIL--PPLTEQEAL 55 (207)
T ss_pred CEEEECCCCCCHHHHHHHHHCCC--CCCCHHHHH
T ss_conf 58978899802999997630148--998789988
No 234
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.36 E-value=0.0028 Score=41.31 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|||.|++||||||..+.|-+..
T Consensus 160 nIii~GGTgSGKTTf~kal~~~I 182 (328)
T TIGR02788 160 NIIISGGTGSGKTTFLKALVKEI 182 (328)
T ss_pred EEEEEECCCCHHHHHHHHHHHCC
T ss_conf 19999068971899999997327
No 235
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.30 E-value=0.0046 Score=39.95 Aligned_cols=27 Identities=37% Similarity=0.690 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 699987889996789999999718948
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
++++.||||.|||+.++.+|+.++.+.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 778779898777999999999838981
No 236
>PHA02244 ATPase-like protein
Probab=96.30 E-value=0.0058 Score=39.33 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=32.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHH
Q ss_conf 6999878899967899999997189489578999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE 38 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~ 38 (201)
-+++.||.||||++.|+.+|+.+.++...+|.+..+.
T Consensus 121 pV~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef 157 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEF 157 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHH
T ss_conf 5699758888634899999998588824413230134
No 237
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.29 E-value=0.0037 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999-878899967899999997189
Q gi|254780240|r 2 RIIF-LGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i-~G~PGsGK~T~a~~la~~~~~ 26 (201)
||+| .|+||.||||+.+-+.+.|--
T Consensus 366 Kv~iLTGGPGTGKtT~t~~i~~~~~~ 391 (769)
T TIGR01448 366 KVVILTGGPGTGKTTITKAIIELYEE 391 (769)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 48998577888616899999999987
No 238
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.26 E-value=0.003 Score=41.13 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=18.0
Q ss_pred EECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98788999678999999971894
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
|+||.||||+|.+|++. ++..|
T Consensus 496 IvGpSGSGKSTLTKL~Q-RLYtP 517 (703)
T TIGR01846 496 IVGPSGSGKSTLTKLLQ-RLYTP 517 (703)
T ss_pred EECCCCCCHHHHHHHHH-HHCCC
T ss_conf 87278986789999988-61488
No 239
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.25 E-value=0.0042 Score=40.15 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=19.0
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHH
Q ss_conf 699-98788999678999999971
Q gi|254780240|r 2 RII-FLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~-i~G~PGsGK~T~a~~la~~~ 24 (201)
+|+ ++|||||||+|.+..|...+
T Consensus 79 ~IllL~GPvGsGKStl~~~Lk~~l 102 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899887799999999999
No 240
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.22 E-value=0.0058 Score=39.31 Aligned_cols=33 Identities=30% Similarity=0.645 Sum_probs=27.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCC--EECHHHHHH
Q ss_conf 998788999678999999971894--895789999
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVP--QLSTGDMLR 36 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~--~is~gdllR 36 (201)
+|.||-|.|||-+|+.||+.+|+. .+.|++-.-
T Consensus 531 LF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmE 565 (774)
T TIGR02639 531 LFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYME 565 (774)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHH
T ss_conf 86479896257889999997082001046504468
No 241
>KOG1970 consensus
Probab=96.21 E-value=0.0049 Score=39.77 Aligned_cols=28 Identities=39% Similarity=0.652 Sum_probs=24.0
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999-878899967899999997189489
Q gi|254780240|r 2 RIIF-LGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i-~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
+|++ .||+||||+|.-+.|++.+|+..+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970 111 RILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 07998579888713199999986480212
No 242
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.20 E-value=0.0046 Score=39.95 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=27.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHH
Q ss_conf 699987889996789999999718-----9489578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdll 35 (201)
.++++||||+||+..|+.||+.+. +..+.++++.
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~ 43 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYM 43 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 999889899899999999999967985344885575654
No 243
>KOG0737 consensus
Probab=96.20 E-value=0.0032 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=27.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC--CEECHHHHHH
Q ss_conf 6999878899967899999997189--4895789999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV--PQLSTGDMLR 36 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~--~~is~gdllR 36 (201)
.|+++||||+||+..|+.+|+.-|- .-+++|.+.-
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737 129 GILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred CCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCH
T ss_conf 3051189982188999999987279710001365532
No 244
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.0048 Score=39.81 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC----CEECHHHHHHHHHHH
Q ss_conf 999878899967899999997189----489578999999960
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV----PQLSTGDMLRAEVDR 41 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~----~~is~gdllR~~~~~ 41 (201)
|+++||.||||||-+.+||.+|.- +-+-+.|..|-+.-.
T Consensus 78 I~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~e 120 (270)
T PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQ 120 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH
T ss_conf 9998889898899999999999867990899983888888999
No 245
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.0027 Score=41.38 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-------ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHC
Q ss_conf 99987889996789999999718948-------95789999999600145666677641344554103566--5554202
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-------LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ--VVCDRIR 73 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-------is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~--li~~~l~ 73 (201)
+.|+||+|+||||-..+||.+|-+.| |+ -|-.|-.. -.+++.|-+ =.=||-+++.. =+...|.
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT-~DTYRIgA------vEQLktYa~-IlgvPv~vv~~~~eL~~aL~ 250 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLT-TDSYRIGG------HEQLRIYGK-ILGVPVHAVKDAADLRLALA 250 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHH------HHHHHHHHH-HCCCEEEEECCHHHHHHHHH
T ss_conf 89866888763758999999999983898379997-68754789------999999998-75955999599999999999
Q ss_pred CCCCCCEEEEC--CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 32225317863--80-11124578887666531252221035554
Q gi|254780240|r 74 LPDCDSGFILD--GY-PRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 74 ~~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
.....+-++|| |. ||+..+.+.+..+ ...+.+++..++|.+
T Consensus 251 ~l~~~dlILIDTaGrs~rD~~~~e~l~~l-~~~~~~~~~~LVLsa 294 (404)
T PRK06995 251 ELRNKHIVLIDTVGMSQRDRMVSEQIAML-HGAGAPVQRLLLLNA 294 (404)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHH-HHCCCCCEEEEEECC
T ss_conf 70899999980999897688899999999-735788528999779
No 246
>KOG0743 consensus
Probab=96.17 E-value=0.0039 Score=40.37 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 9987889996789999999718948
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
++.||||+||+|.-+.+|.++++-.
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydI 263 (457)
T KOG0743 239 LLYGPPGTGKSSFIAAMANYLNYDI 263 (457)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 2047999988899999972058736
No 247
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.15 E-value=0.012 Score=37.44 Aligned_cols=143 Identities=22% Similarity=0.236 Sum_probs=69.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC---CEECHHHHH---HHHHHH--HH----------HHHHHHHHHHHCCCCCCCHHH
Q ss_conf 999878899967899999997189---489578999---999960--01----------456666776413445541035
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV---PQLSTGDML---RAEVDR--NT----------LLGKQVKGSMESGSLISDAIV 64 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~---~~is~gdll---R~~~~~--~s----------~~g~~i~~~l~~G~lvpd~ii 64 (201)
|-|.|..||||+|.++.|.+.|+- ..|+.-+.- |++.+. -+ .+...++ .+.+|+.+---+-
T Consensus 2 IgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r~~~~~t~~~P~And~dll~~~l~-~Lk~Gk~i~~PvY 80 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLK-ALKEGQAIEKPIY 80 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCCCCC
T ss_conf 899788878699999999998584876999657778899899987187768975234999999999-9985995343222
Q ss_pred HHHHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 6655542023---222531786380111245788876665312522210355542212566423311232333455656-
Q gi|254780240|r 65 NQVVCDRIRL---PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRS- 140 (201)
Q Consensus 65 ~~li~~~l~~---~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~- 140 (201)
.....++.. .....-+|++|.=--.. ..+.+ -.|+-|+++++.++...|-..|-...- +|+
T Consensus 81 -dh~tg~~~~~e~i~p~diII~EGLh~l~~------~~lrd---l~DLkIfVD~d~dlr~~rKI~RD~~ER-----GyS~ 145 (273)
T cd02026 81 -NHVTGLIDPPELIKPTKIVVIEGLHPLYD------ERVRE---LLDFSVYLDISDEVKFAWKIQRDMAER-----GHSL 145 (273)
T ss_pred -CCCCCCCCCCEEECCCCEEEEECEECCCC------HHHHH---HHCEEEEECCCHHHHHHHHHHHHHHHH-----CCCH
T ss_conf -14589657756506874799922000266------88986---607468856876479999877667664-----8899
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 789899999999999975699
Q gi|254780240|r 141 DDKYDVFLKRIENYRKTILPL 161 (201)
Q Consensus 141 DD~~e~i~~Rl~~y~~~~~pv 161 (201)
++-.+.|.+|...|..-..|=
T Consensus 146 E~V~~~I~rR~pDy~~yI~PQ 166 (273)
T cd02026 146 EDVLASIEARKPDFEAYIDPQ 166 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999986047889750757
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.15 E-value=0.0055 Score=39.47 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=26.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH---C--CCEECHHHHHHH
Q ss_conf 69998788999678999999971---8--948957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL---N--VPQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~---~--~~~is~gdllR~ 37 (201)
.|+|+||||+||+|.+..++... + ..+++.++-.++
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf 98999899998999999999998763997999986664489
No 249
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.003 Score=41.06 Aligned_cols=33 Identities=39% Similarity=0.749 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHH
Q ss_conf 69998788999678999999971894895789999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR 36 (201)
+++++||||||||..|+++..- +|-+|.-++|.
T Consensus 200 nLl~~GpPGtGKTmla~Rl~~l--LPpls~~E~lE 232 (490)
T COG0606 200 NLLLVGPPGTGKTMLASRLPGL--LPPLSIPEALE 232 (490)
T ss_pred CEEEECCCCCCHHHHHHHHHCC--CCCCCHHHHHH
T ss_conf 6787569988656764231025--99987088899
No 250
>KOG0738 consensus
Probab=96.13 E-value=0.0055 Score=39.46 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=26.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE--ECHHHHH
Q ss_conf 99987889996789999999718948--9578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ--LSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~--is~gdll 35 (201)
++++||||+||+-.|+.+|..-|-+. +|...|.
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738 248 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHHH
T ss_conf 05567999747899999988616727874024565
No 251
>PRK06761 hypothetical protein; Provisional
Probab=96.07 E-value=0.0053 Score=39.54 Aligned_cols=24 Identities=50% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
|+|-|-|||||||.+++|++.+.-
T Consensus 5 IiIEGlPGsGKSTta~~l~d~L~~ 28 (281)
T PRK06761 5 IIIEGLPGFGKSTTAHLLNDKLSQ 28 (281)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999668999801499999999986
No 252
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.05 E-value=0.0058 Score=39.31 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
++++.||||+||||.++.|+.-+
T Consensus 31 gvLi~G~~GtgKStlaR~l~~iL 53 (334)
T PRK13407 31 GVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 08997899865999999999728
No 253
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.05 E-value=0.0043 Score=40.14 Aligned_cols=33 Identities=36% Similarity=0.783 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHH
Q ss_conf 69998788999678999999971894895789999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR 36 (201)
+++++|||||||+..|++|.-- +|-++..+.+.
T Consensus 212 nlLl~GpPG~GKTMlA~rlp~I--LPpLt~~e~lE 244 (506)
T PRK09862 212 NLLLIGPPGTGKTMLASRINGL--LPDLSNEEALE 244 (506)
T ss_pred CEEEECCCCCCHHHHHHHHHHC--CCCCCHHHHHH
T ss_conf 6598769994598999775123--89989899999
No 254
>KOG0742 consensus
Probab=96.05 E-value=0.0056 Score=39.41 Aligned_cols=33 Identities=36% Similarity=0.718 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE--ECHHHH
Q ss_conf 699987889996789999999718948--957899
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ--LSTGDM 34 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~--is~gdl 34 (201)
||+|.||||.||+..|+.||.+-|+-| ..-||+
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV 420 (630)
T KOG0742 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420 (630)
T ss_pred HEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCC
T ss_conf 00324799986049999998852874100137875
No 255
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.03 E-value=0.0043 Score=40.11 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=65.3
Q ss_pred EECCCCCCHHHHHHHHHH----HHC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 987889996789999999----718-948957899999996001456666776413445541035665554202322253
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQ----KLN-VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~----~~~-~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
|+|||||||||+|=.+|- ..+ ..||.+ ++--=..++++...+-.+=|+.+...
T Consensus 17 iYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDT---------EGGLS~ER~~q~~~~~~~D~e~~~~~------------- 74 (223)
T TIGR02237 17 IYGPPGSGKTNICLILAVNAARQGKKVVYIDT---------EGGLSPERFKQIAEDRALDPERVLSN------------- 74 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC---------CCCCHHHHHHHHHHCCCCCHHHHHCC-------------
T ss_conf 87589986789999999999861895899962---------89832899999863058898888415-------------
Q ss_pred EEEECCCHHHHHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 17863801112457888766---653125222103555422125664233112323334556567898999999999999
Q gi|254780240|r 80 GFILDGYPRTVDQAKSLHAF---ISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRK 156 (201)
Q Consensus 80 g~ilDGFPRt~~Qa~~l~~~---l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~ 156 (201)
=+|++-| +=.+|.++..+. +...+...++| + +|--+.+-|+. ++||.. .-..+...+-.
T Consensus 75 ~iv~~~~-~f~eQ~~ai~~~~~~~~~~G~~~~Lv-V--vDs~t~~YRle-------------~~~d~n-k~~~~~~~l~~ 136 (223)
T TIGR02237 75 VIVFEVF-DFDEQEVAIQKTSKLIDRDGDKADLV-V--VDSFTALYRLE-------------RSDDRN-KQISLNRELAR 136 (223)
T ss_pred EEEECCC-CHHHHHHHHHHHHHHHHCCCCEEEEE-E--EECCHHHHHHC-------------CCCCCH-HHHHHHHHHHH
T ss_conf 3552353-56789999999999986068833148-8--81533454202-------------578602-56799999999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 75699999996797
Q gi|254780240|r 157 TILPLSSYYRDMGC 170 (201)
Q Consensus 157 ~~~pv~~~y~~~~~ 170 (201)
|..-++..=++.+.
T Consensus 137 Ql~~Ll~lArk~~~ 150 (223)
T TIGR02237 137 QLTLLLSLARKKDL 150 (223)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999876499
No 256
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.02 E-value=0.0047 Score=39.90 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
.+||||-||||||.++-||=+..+
T Consensus 29 HAiMGPNGsGKSTL~~~iaGhp~y 52 (248)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGHPKY 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCE
T ss_conf 998688998478887776179933
No 257
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0078 Score=38.49 Aligned_cols=27 Identities=48% Similarity=0.757 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 699987889996789999999718948
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
||+++||.||||+-.|+-||+.+++|.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPF 125 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPF 125 (408)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 179988899757799999999848984
No 258
>KOG0780 consensus
Probab=95.98 E-value=0.011 Score=37.48 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=29.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHHH
Q ss_conf 9998788999678999999971---89-489578999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRAE 38 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~~ 38 (201)
|.|+|--||||+|.|.++|-+| |+ +.+-++|-+|..
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9998305788630089999999846872457760224530
No 259
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.93 E-value=0.0055 Score=39.47 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
++.|+||.||||+|.+++|+.-|.-
T Consensus 351 ~vaiVG~SGsGKSTL~~LL~r~y~p 375 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQP 375 (547)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999899999779999998289669
No 260
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.93 E-value=0.0072 Score=38.70 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9699987889996789999999718
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
.+|+|.||+||||+|....|...+.
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9899989999989999999996133
No 261
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=95.93 E-value=0.0074 Score=38.65 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
||+|.|++|+|||.+++.+++.
T Consensus 45 Ni~iYGkTGtGKT~vt~~v~~~ 66 (383)
T TIGR02928 45 NIFIYGKTGTGKTAVTKYVMKE 66 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 2588788898788999999999
No 262
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.92 E-value=0.0045 Score=39.97 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+||++.|+-||||||.|=-|=.+
T Consensus 140 ~NIlv~GGTGSGKTTLaNAlla~ 162 (315)
T TIGR02782 140 KNILVVGGTGSGKTTLANALLAE 162 (315)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 98899814588579999999998
No 263
>KOG0739 consensus
Probab=95.89 E-value=0.012 Score=37.32 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=29.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHHH
Q ss_conf 99987889996789999999718--948957899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ 37 (201)
|+++||||.||+-.|+.+|-.-+ |..+|..||+-+
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739 169 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf 7886799975779999987414770687301788998
No 264
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=95.88 E-value=0.0063 Score=39.08 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH----HCCCEEC
Q ss_conf 999878899967899999997----1894895
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK----LNVPQLS 30 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~----~~~~~is 30 (201)
++|+||.||||+|.-+.|-.- -|-.+|.
T Consensus 22 ~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~ID 53 (372)
T TIGR01186 22 FVIMGLSGSGKSTLVRMLNRLIEPTAGQIFID 53 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 99977899857899999872257778746766
No 265
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.0075 Score=38.60 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=55.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE--------C-HHHH-HHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999878899967899999997189489--------5-7899-999996001456-6667764134455410356655542
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL--------S-TGDM-LRAEVDRNTLLG-KQVKGSMESGSLISDAIVNQVVCDR 71 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i--------s-~gdl-lR~~~~~~s~~g-~~i~~~l~~G~lvpd~ii~~li~~~ 71 (201)
.+|.|+-|.||||.|+.||+-++-..- . +|.. -..++.+++-.- .+|...-+. .-+-+-+++ +.
T Consensus 48 ~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~daas~~----~v~~~r~~~-~~ 122 (600)
T PRK09111 48 FMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIMEGRHVDVIEMDAASHT----GVDDIREII-ES 122 (600)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCC----CHHHHHHHH-HH
T ss_conf 7645789878999999999996698876668998898998865898866899875885155457----888999999-86
Q ss_pred HCCCC--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH------HHHHHH
Q ss_conf 02322--2-53178638011124578887666531252221035554221------256642
Q gi|254780240|r 72 IRLPD--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDA------SMFKRI 124 (201)
Q Consensus 72 l~~~~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~------~~~~R~ 124 (201)
..-.+ + -+-||||-.- +---.+|..++.....||.+|.++-+.-+ ++..|+
T Consensus 123 ~~~~p~~~~~kv~iidevh--mls~~afnallktleepp~~~~fi~att~~~k~p~ti~src 182 (600)
T PRK09111 123 VRYRPVSARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRC 182 (600)
T ss_pred HCCCCCCCCEEEEEEECCC--CCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHH
T ss_conf 0538877754699960011--05799999999876259865499996285343758998544
No 266
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.84 E-value=0.015 Score=36.75 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=25.9
Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHCCC-EECHH-HHHHHHHHH
Q ss_conf 96999-8788999678999999971894-89578-999999960
Q gi|254780240|r 1 MRIIF-LGPPGSGKGTQACRLSQKLNVP-QLSTG-DMLRAEVDR 41 (201)
Q Consensus 1 m~I~i-~G~PGsGK~T~a~~la~~~~~~-~is~g-dllR~~~~~ 41 (201)
|+++| .|+||+||+|.-.-|+.. |+. +-..| ++++.+-.+
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~-Gfatvee~~r~ii~~es~~ 51 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA-GFATVEEAGRDIIALESAQ 51 (183)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-CCEEECCCHHHHHHHHHHC
T ss_conf 338998379997689999999975-8635013416689998754
No 267
>PRK08116 hypothetical protein; Validated
Probab=95.81 E-value=0.03 Score=34.87 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=28.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCCEECHHHHHHHH
Q ss_conf 9998788999678999999971-----89489578999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL-----NVPQLSTGDMLRAE 38 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~~ 38 (201)
++|.|+||+|||..|.-||..+ ...++++.++|.+-
T Consensus 111 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~l 151 (262)
T PRK08116 111 LLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRI 151 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
T ss_conf 89989899989999999999999879939998899999999
No 268
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=95.79 E-value=0.0094 Score=38.00 Aligned_cols=30 Identities=37% Similarity=0.646 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECH
Q ss_conf 699987889996789999999718948957
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLST 31 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~ 31 (201)
||+.+||-|.|||-+|++||+-.+.|.|-+
T Consensus 49 NILMiGpTGVGKTEIARRlAKL~~aPFiKV 78 (463)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAPFIKV 78 (463)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 304327889854479999999844891466
No 269
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=95.77 E-value=0.0077 Score=38.55 Aligned_cols=22 Identities=50% Similarity=0.785 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
|+|.||||+||++.|..||...
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~ 22 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARAL 22 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 9897999898899999999999
No 270
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=95.74 E-value=0.0073 Score=38.69 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=16.3
Q ss_pred EEE-ECCCCCCHHHHHHHHHH
Q ss_conf 999-87889996789999999
Q gi|254780240|r 3 IIF-LGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i-~G~PGsGK~T~a~~la~ 22 (201)
|+| .||.||||||.=.++.-
T Consensus 33 iViltGPSGSGKTTLLtLiG~ 53 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 798437889846889998876
No 271
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=95.72 E-value=0.046 Score=33.67 Aligned_cols=140 Identities=25% Similarity=0.287 Sum_probs=79.2
Q ss_pred EEECCCCCCH----HHHHHHHHHHHCC--CEE----------CH--HHHHHHHH---HHHHH-------HHHHHHHHHHC
Q ss_conf 9987889996----7899999997189--489----------57--89999999---60014-------56666776413
Q gi|254780240|r 4 IFLGPPGSGK----GTQACRLSQKLNV--PQL----------ST--GDMLRAEV---DRNTL-------LGKQVKGSMES 55 (201)
Q Consensus 4 ~i~G~PGsGK----~T~a~~la~~~~~--~~i----------s~--gdllR~~~---~~~s~-------~g~~i~~~l~~ 55 (201)
-|-|+.|||| ||+++.|.+.++- .++ +. +++=.++. +=+-| +...++ .|.+
T Consensus 14 gI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~Ll~~Hl~-nLk~ 92 (220)
T TIGR00235 14 GISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDLLYEHLK-NLKN 92 (220)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHHHHHHHH-HHHC
T ss_conf 701766101567899999999998314001457750324458898873124643125889800303799999999-9846
Q ss_pred CCCCCCHHHHHHHH-HH-HCCC---CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44554103566555-42-0232---2253178638011124578887666531252221035554221256642331123
Q gi|254780240|r 56 GSLISDAIVNQVVC-DR-IRLP---DCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 (201)
Q Consensus 56 G~lvpd~ii~~li~-~~-l~~~---~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~ 130 (201)
|..|.-= +-..+. .| .++. .-.+-+||.|.= ..+++-+... .|+-|+.|.+.++++-|-..|-..
T Consensus 93 g~~~~~P-~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~------~l~D~Rl~~L---~dlkifvDt~~D~rliRRl~RD~~ 162 (220)
T TIGR00235 93 GSAIDVP-VYDYVNHTRVKKETVHVEPKDVVILEGIL------LLTDERLRDL---MDLKIFVDTPLDIRLIRRLERDIE 162 (220)
T ss_pred CCEECCC-CCCCCCEECCCCCCEEECCEEEEEEECCH------HHHHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 8802245-42541002025562687350689970618------8887999887---182367746830325656565575
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23334556567898999999999999756999999
Q gi|254780240|r 131 AIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYY 165 (201)
Q Consensus 131 ~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y 165 (201)
.- +| +.+++ ++.|.+.+.|.-.-|
T Consensus 163 ~R-----GR---~~dSv---I~Qy~~~V~Pm~~~F 186 (220)
T TIGR00235 163 ER-----GR---SLDSV---IDQYRKTVRPMYLQF 186 (220)
T ss_pred HC-----CC---CHHHH---HHHHHHHCCCCCCCC
T ss_conf 42-----89---78899---999998534621014
No 272
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.022 Score=35.70 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=49.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE---CHHHH--HHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-
Q ss_conf 999878899967899999997189489---57899--999996001-45666677641344554103566555420232-
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL---STGDM--LRAEVDRNT-LLGKQVKGSMESGSLISDAIVNQVVCDRIRLP- 75 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i---s~gdl--lR~~~~~~s-~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~- 75 (201)
-+|.||+|+||+|.|..+|+.+.=.+= .+|.. .|. +..++ + .+..+.-.|..+.-+-+-+++...-..+
T Consensus 42 yLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~-i~~g~hp---Dv~~i~p~~~~i~id~iR~l~~~~~~~p~ 117 (395)
T PRK07940 42 WLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRT-VLAGTHP---DVRVVVPEGLSIGVDEVREIVQIAARRPT 117 (395)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHCCCCC---CEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 7636899878899999999996699999999987878999-8768998---71898268776889999999999852730
Q ss_pred CC-CCEEEECCCHHHHHH-HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 22-531786380111245-78887666531252221035554
Q gi|254780240|r 76 DC-DSGFILDGYPRTVDQ-AKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 76 ~~-~~g~ilDGFPRt~~Q-a~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
.+ .+-||||..=+=-.+ +++|-+.++ .||..++++=+
T Consensus 118 ~~~~kv~ii~~a~~m~~~a~NalLKtLE---EPp~~~~fiL~ 156 (395)
T PRK07940 118 TGRWRIVVIEDADRLTERAANALLKAVE---EPPPRTVWLLC 156 (395)
T ss_pred CCCCEEEEEECHHHHCHHHHHHHHHHHC---CCCCCEEEEEE
T ss_conf 3795599980778748999999998521---78888699987
No 273
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=95.69 E-value=0.0087 Score=38.19 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
||-|+||.||||||..+.|+--
T Consensus 389 r~Ai~G~SG~GKsTLL~~L~G~ 410 (566)
T TIGR02868 389 RVAILGPSGSGKSTLLATLAGL 410 (566)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 0898668876578999999840
No 274
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.67 E-value=0.015 Score=36.72 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
|+|+||-+||||-+|-.||+++|..-||.-.+
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCHH
T ss_conf 99989887577899999999829928930235
No 275
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.66 E-value=0.012 Score=37.30 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
++.|+||.||||+|..+.|..-|.-
T Consensus 343 ~vaIVG~SGsGKSTLl~LL~g~y~p 367 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8998799999879999999977642
No 276
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.023 Score=35.55 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=51.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE----CHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 999878899967899999997189489----578999-99996001456666776413445541035665554202322-
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL----STGDML-RAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD- 76 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i----s~gdll-R~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~- 76 (201)
.+|.|+-|.||+|.|+.+|+-++-..= -+|.+- ..+|.++.-.- .+ + ++.-..-.-+-+-+|+.+ ..-.+
T Consensus 41 ylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d-~~-e-idaas~~~v~~~r~l~~~-~~~~p~ 116 (696)
T PRK06872 41 YLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFID-LI-E-IDAASRTKVEDTRELLDN-VQYKPV 116 (696)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC-EE-E-EECCCCCCHHHHHHHHHH-CCCCCC
T ss_conf 7511789888889999999986789999999788862257674478775-46-7-505655788999999984-545776
Q ss_pred -C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -2-531786380111245788876665312522210355542
Q gi|254780240|r 77 -C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 (201)
Q Consensus 77 -~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~ 116 (201)
+ -+-||||.. .+---..|..++.....+|.+|.||-+.
T Consensus 117 ~~~~kvy~idev--hmls~~~fnallktleepp~~v~f~lat 156 (696)
T PRK06872 117 VGRFKVYLIDEV--HMLSRHSFNALLKTLEEPPEYVKFLLAT 156 (696)
T ss_pred CCCEEEEEEEHH--HHCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 775479997005--4438999999987502797544899843
No 277
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.64 E-value=0.089 Score=31.86 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHH-HHHCCCEECH
Q ss_conf 9998788999678999999-9718948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS-QKLNVPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la-~~~~~~~is~ 31 (201)
++|.+|+|+||||....-+ ..-....+|.
T Consensus 35 ~lv~APaG~GKTtl~a~w~~~~~~~~Wlsl 64 (903)
T PRK04841 35 VLVRSPAGYGKTTLASQWAAGKNNVGWYSL 64 (903)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 999779998899999999834998599858
No 278
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.64 E-value=0.011 Score=37.59 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+|.|+||.||||+|.++.|..-|.-
T Consensus 363 ~vaiVG~SGsGKSTL~~LL~gly~p 387 (585)
T PRK13657 363 TVAIVGPTGAGKSTLINLLHRVFDP 387 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8999889898699999998601578
No 279
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.64 E-value=0.011 Score=37.45 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC---C-------CEECHHHHHHHHH
Q ss_conf 99987889996789999999718---9-------4895789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN---V-------PQLSTGDMLRAEV 39 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~---~-------~~is~gdllR~~~ 39 (201)
+++.|+|||||||.++.+.+.+. + +.++..++++.-.
T Consensus 46 ~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~ 92 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVA 92 (269)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99972998988999999998459345489997699999999999999
No 280
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=95.61 E-value=0.0093 Score=38.01 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=56.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-----------CHHHHH
Q ss_conf 99987889996789999999718948----9578999-9999600145666677641344554-----------103566
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDML-RAEVDRNTLLGKQVKGSMESGSLIS-----------DAIVNQ 66 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdll-R~~~~~~s~~g~~i~~~l~~G~lvp-----------d~ii~~ 66 (201)
-+|.|+-|.||+|+|+.||+-++-.+ --+|.+- ..+| ++|..+. -+-+-+
T Consensus 41 ~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i--------------~~~~~~d~~e~d~as~~~v~~~r~ 106 (705)
T PRK05648 41 YLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREI--------------DEGRFVDLIEVDAASRTKVEDTRE 106 (705)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--------------HCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 650078988898999999998677899988978776004666--------------248977634451554478899999
Q ss_pred HHHHHHCCCC--C-CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHHHHH
Q ss_conf 5554202322--2-531786380111245788876665312522210355542------212566423
Q gi|254780240|r 67 VVCDRIRLPD--C-DSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE------DASMFKRIQ 125 (201)
Q Consensus 67 li~~~l~~~~--~-~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~------~~~~~~R~~ 125 (201)
|+.+ ..-.+ + -+-||||.. .+---..|..++.....+|.+|.||-+. ..+++.|+.
T Consensus 107 ~~~~-~~~~p~~~~~kv~~idev--hmls~~~fnallktleepp~~v~f~~att~~~k~p~t~~src~ 171 (705)
T PRK05648 107 LLDN-VQYAPTRGRYKVYLIDEV--HMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCL 171 (705)
T ss_pred HHHH-CCCCCCCCCEEEEEEEHH--HHCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 9985-551776774579998426--5417999999987404797545999842873537589997664
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.61 E-value=0.011 Score=37.56 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 99987889996789999999718948
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
|.+.||||+||+|..+.|.++|.-..
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~ 67 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQN 67 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989899778899999999985443
No 282
>KOG0741 consensus
Probab=95.61 E-value=0.014 Score=36.81 Aligned_cols=24 Identities=42% Similarity=0.793 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
|+++||||.||+-.|+.|-+-++-
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741 259 ILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 788779998701899998787457
No 283
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.017 Score=36.42 Aligned_cols=25 Identities=36% Similarity=0.729 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9998788999678999999971894
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
+.|+||.|.||||-..+||.+|-+.
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~ 375 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQ 375 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 7874377767311799999999997
No 284
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.60 E-value=0.028 Score=35.05 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=28.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHHHH
Q ss_conf 9998788999678999999971---89-4895789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRAEV 39 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~~~ 39 (201)
|+++|.-||||||-|.+||.+| |. +-+.+.|..|.+.
T Consensus 100 im~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA 140 (433)
T PRK00771 100 ILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGA 140 (433)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 99973788978999999999999779946785067883689
No 285
>KOG0234 consensus
Probab=95.60 E-value=0.036 Score=34.32 Aligned_cols=172 Identities=19% Similarity=0.221 Sum_probs=86.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---HCC
Q ss_conf 999878899967899999997189-----489578999999960014566667764134455410356655542---023
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV-----PQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDR---IRL 74 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~-----~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~---l~~ 74 (201)
|+++|-|.+||+-.+..|...+.+ .++++|++-|+..+..+. ..-....=+++..+..++....+.+- +..
T Consensus 31 ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~D~~~~l~~ 109 (438)
T KOG0234 31 IVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALNDLLHFLIK 109 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99825776676435566788887506664535389887988516565-51026677011022588898875557877520
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 222531786380111245788876665-3125222103555422125664233-11232333455656789899999999
Q gi|254780240|r 75 PDCDSGFILDGYPRTVDQAKSLHAFIS-NMDCAIDAVIELRVEDASMFKRIQV-RVLEAIASEKSVRSDDKYDVFLKRIE 152 (201)
Q Consensus 75 ~~~~~g~ilDGFPRt~~Qa~~l~~~l~-~~~~~~~~vi~L~~~~~~~~~R~~~-R~~~~~~~~~~~R~DD~~e~i~~Rl~ 152 (201)
.+ ..--|+|--+-|..--+.+..... ..+..+ +.|.--|.+..++.+..+ ++...+--+ ..+.+--.+.+.+|+.
T Consensus 110 ~~-g~vai~Datnttr~rrk~i~~~~~~~~~~kv-~FiEs~c~D~~ii~~NI~~~~~~spdy~-~~~~e~a~~dfl~ri~ 186 (438)
T KOG0234 110 EN-GQVAIFDATNTTRERRKRIIDFAEREAGFKV-FFIESVCNDPNLINNNIREVKHVSPDYK-GKDQEEALKDFLKRIR 186 (438)
T ss_pred CC-CCEEEECCCCCCHHHHHHHHHHHHHCCCCEE-EEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHH
T ss_conf 48-8368736999977889999998864488169-9998523771567766644400587767-8898999999999987
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEECCCC
Q ss_conf 999975699999996-79799993899
Q gi|254780240|r 153 NYRKTILPLSSYYRD-MGCLYIIDGML 178 (201)
Q Consensus 153 ~y~~~~~pv~~~y~~-~~~l~~Idg~~ 178 (201)
.|...-.|+-+--++ ...+..||+.+
T Consensus 187 ~ye~~YePld~~~d~~lsyik~in~g~ 213 (438)
T KOG0234 187 NYEKYYEPLDRARDKDLSYIKIINVGE 213 (438)
T ss_pred HHHHCCCCCCHHHCCCCCEEEEECCCC
T ss_conf 666405767700045552678851651
No 286
>KOG0635 consensus
Probab=95.59 E-value=0.0052 Score=39.59 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=64.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH----CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 969998788999678999999971----8948957899999996001456666776413445541035665554202322
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL----NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPD 76 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~----~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~ 76 (201)
+-|++.|-.||||+|+|..|.+.+ .+.|+--||-+|.-.+ +++|-.+++.-++=..| ..+.+|..+. ..-
T Consensus 32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN--~DL~F~a~dR~ENIRRi--geVaKLFADa--g~i 105 (207)
T KOG0635 32 CVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN--KDLGFKAEDRNENIRRI--GEVAKLFADA--GVI 105 (207)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC--CCCCCCHHHHHHHHHHH--HHHHHHHHCC--CEE
T ss_conf 68997425778802599999999986586589854854010434--45676503344657888--9999987325--403
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 25317863801112457888766653125222103555422125664
Q gi|254780240|r 77 CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 77 ~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
|- .-+|.-|-+..+++..|... + ...-++.+||.+++.+|
T Consensus 106 ci-aSlISPYR~dRdacRel~~~----~--~FiEvfmdvpl~vcE~R 145 (207)
T KOG0635 106 CI-ASLISPYRKDRDACRELLPE----G--DFIEVFMDVPLEVCEAR 145 (207)
T ss_pred EE-EHHCCCHHCCHHHHHHHCCC----C--CEEEEEECCCHHHHHCC
T ss_conf 10-02158002057999973668----9--85888752868786414
No 287
>KOG1534 consensus
Probab=95.55 E-value=0.0095 Score=37.95 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999756999999967979999389988999999999999999
Q gi|254780240|r 152 ENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVR 195 (201)
Q Consensus 152 ~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~~~ 195 (201)
..|+.-+.-+...-.+-+.+..+.-+.+-+|--+.|+..|+...
T Consensus 207 ~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534 207 PKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 77899999999985113635665467788779999999988898
No 288
>PRK06851 hypothetical protein; Provisional
Probab=95.54 E-value=0.015 Score=36.75 Aligned_cols=24 Identities=38% Similarity=0.717 Sum_probs=20.5
Q ss_pred CEEEEE-CCCCCCHHHHHHHHHHHH
Q ss_conf 969998-788999678999999971
Q gi|254780240|r 1 MRIIFL-GPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 1 m~I~i~-G~PGsGK~T~a~~la~~~ 24 (201)
.||+++ |+||+||+|.-++|++.+
T Consensus 31 ~ri~ilKGGpGtGKStlmK~ig~~~ 55 (368)
T PRK06851 31 NRIFILKGGPGTGKSTLMKKIGEEF 55 (368)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2799996899977899999999999
No 289
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.54 E-value=0.011 Score=37.45 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
++.|+||.||||||.++.|+.-|.-
T Consensus 369 ~vaiVG~SGsGKSTL~~LL~r~ydp 393 (575)
T PRK11160 369 KVALLGRTGCGKSTLLQLLTRAWDP 393 (575)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999889997599999998623678
No 290
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.53 E-value=0.011 Score=37.50 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHH----HHHCCCEECHHHHHH
Q ss_conf 69998788999678999999----971894895789999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLS----QKLNVPQLSTGDMLR 36 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la----~~~~~~~is~gdllR 36 (201)
+|-+.|||||||||.-.++. ++|.+..|. ||++.
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~-~Di~t 52 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT-GDIYT 52 (202)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEE-CEEEC
T ss_conf 999617998678999999999997527768996-40400
No 291
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.52 E-value=0.014 Score=36.98 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-------CCCEECH
Q ss_conf 69998788999678999999971-------8948957
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL-------NVPQLST 31 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~-------~~~~is~ 31 (201)
+++|.||||+|||+..+.+.+.+ .++||.+
T Consensus 57 n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc 93 (394)
T PRK00411 57 NVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINC 93 (394)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 4799889999899999999999997468965999969
No 292
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.50 E-value=0.014 Score=36.83 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 69998788999678999999971894
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
++.|+||.||||+|.++.|..-|...
T Consensus 369 ~vaIVG~SGsGKSTL~~LL~rly~p~ 394 (593)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLT 394 (593)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 89987999886899999999855678
No 293
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.50 E-value=0.012 Score=37.28 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+|.|+||.||||+|..+.|..-|.
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999989999999823861
No 294
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.48 E-value=0.011 Score=37.54 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 69998788999678999999971894
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
++.|+||.||||+|.++.|+.-|...
T Consensus 370 ~vaiVG~SGsGKSTL~~LL~gly~p~ 395 (581)
T PRK11176 370 TVALVGRSGSGKSTIANLLTRFYDID 395 (581)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 43122899986789999998536678
No 295
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.42 E-value=0.016 Score=36.61 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH---HC--CCEECH
Q ss_conf 999878899967899999997---18--948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK---LN--VPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~---~~--~~~is~ 31 (201)
+.|.|+|||||+|.|-.+|.. .| ..|+++
T Consensus 26 tei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidt 59 (224)
T PRK09361 26 TQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDT 59 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9998999985999999999999974990999678
No 296
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.39 E-value=0.016 Score=36.60 Aligned_cols=25 Identities=48% Similarity=0.647 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+||+-||||+|||-.|++||+.++-
T Consensus 196 nvIL~G~pGtGKT~lAk~lA~~l~g 220 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 2796589998878999999999707
No 297
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.39 E-value=0.017 Score=36.41 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=32.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH---HCC--CEECH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999878899967899999997---189--48957----89999999600145666677641344554
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK---LNV--PQLST----GDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~---~~~--~~is~----gdllR~~~~~~s~~g~~i~~~l~~G~lvp 60 (201)
+++.|+|||||++.|...+-. .|- .++|+ .++++... .+|-....+.++|++..
T Consensus 26 ~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~----~~g~d~~~~~~~g~l~i 88 (260)
T COG0467 26 VLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR----SFGWDLEVYIEKGKLAI 88 (260)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH----HCCCCHHHHHHCCEEEE
T ss_conf 9999389986899999999977626985899992069899999998----80997789754440687
No 298
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=95.38 E-value=0.016 Score=36.47 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9699987889996789999999
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~ 22 (201)
|||+++|.+||||||...++..
T Consensus 1 ~KililG~~~sGKTsll~~l~~ 22 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9999999999998999999972
No 299
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=95.36 E-value=0.013 Score=37.05 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCEEC
Q ss_conf 9998788999678999999971----894895
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL----NVPQLS 30 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~----~~~~is 30 (201)
+|+.||+|+||||.-++|+... |.+.|.
T Consensus 31 ~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~ 62 (215)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALTPSRGQVRVA 62 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 78872778617899999985269875808888
No 300
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.36 E-value=0.013 Score=37.18 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9699987889996789999999718
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+||+++|++|+||||...++....-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999988999999964767
No 301
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.35 E-value=0.033 Score=34.54 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=25.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHH
Q ss_conf 99987889996789999999718-----9489578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdll 35 (201)
++|.||+|||||..+.-++.++. ..++++.++.
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~ 78 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf 99989999988999999999986269957995299987
No 302
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=95.33 E-value=0.0091 Score=38.07 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 699987889996789999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~ 22 (201)
||.|+|+-||||||.|..|.-
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g 22 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG 22 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCC
T ss_conf 178871588874435431168
No 303
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.31 E-value=0.017 Score=36.42 Aligned_cols=23 Identities=48% Similarity=0.803 Sum_probs=18.5
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHH
Q ss_conf 699-98788999678999999971
Q gi|254780240|r 2 RII-FLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~-i~G~PGsGK~T~a~~la~~~ 24 (201)
+|+ ++||+||||+|.+..|.+-+
T Consensus 86 qIllL~GPVGsGKSsl~e~LK~gl 109 (358)
T pfam08298 86 QILYLLGPVGGGKSSLAERLKKLL 109 (358)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 589997789877589999999872
No 304
>KOG0651 consensus
Probab=95.30 E-value=0.037 Score=34.24 Aligned_cols=34 Identities=24% Similarity=0.554 Sum_probs=27.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCC--EECHHHHHHH
Q ss_conf 998788999678999999971894--8957899999
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVP--QLSTGDMLRA 37 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~--~is~gdllR~ 37 (201)
.+.||||.||+-||..++.++|.- -.++|.+.-.
T Consensus 170 ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651 170 LLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf 876799986459999999865985477447666330
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.035 Score=34.43 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=46.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC----CEECHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999878899967899999997189----4895789999999600-14566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV----PQLSTGDMLRAEVDRN-TLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~----~~is~gdllR~~~~~~-s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
|.++||-||||||-+.+||.+|.- +-+-++|-+|.+.-.+ ..+|+++.--+..+.- |.++...+ ..+....+
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~~d-pa~l~~av--~~~a~~~~ 285 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATS-PAELEEAV--QYMTYVNC 285 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECC-HHHHHHHH--HHHHHCCC
T ss_conf 9998999897899999999999977991799970667788999999999997964998188-89999999--99986289
Q ss_pred CCEEEECCCHHHHH
Q ss_conf 53178638011124
Q gi|254780240|r 78 DSGFILDGYPRTVD 91 (201)
Q Consensus 78 ~~g~ilDGFPRt~~ 91 (201)
.+-+++|===|+..
T Consensus 286 ~DvVIIDTAGRl~~ 299 (407)
T PRK12726 286 VDHILIDTVGRNYL 299 (407)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899969998813
No 306
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.27 E-value=0.014 Score=36.89 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+||.||||+|.++.|+.-|.
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999849999999964546
No 307
>KOG0745 consensus
Probab=95.25 E-value=0.023 Score=35.52 Aligned_cols=28 Identities=43% Similarity=0.705 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999878899967899999997189489
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
||+++||.||||+-.|+-||+-+++|..
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfa 255 (564)
T KOG0745 228 NVLLLGPTGSGKTLLAQTLARVLDVPFA 255 (564)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 4799778887643899999997088768
No 308
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.25 E-value=0.021 Score=35.83 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+|++.||+||||||....|.....
T Consensus 141 ~ilIsG~TGSGKTT~l~all~~i~ 164 (283)
T pfam00437 141 NILVSGGTGSGKTTLLYALLNEIN 164 (283)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 599988999988999999998408
No 309
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.014 Score=36.97 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
++.|+||.||||+|..+.|..-|
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999998999999974385
No 310
>PRK06620 hypothetical protein; Validated
Probab=95.22 E-value=0.025 Score=35.34 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
Q ss_conf 99987889996789999999718948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~ 31 (201)
++|.||+|||||..++..++..+-..++.
T Consensus 47 l~I~Gp~gSGKTHL~~i~~~~~~a~~~~~ 75 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSNAYIIKD 75 (214)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 99987999988999999999828588151
No 311
>KOG2028 consensus
Probab=95.22 E-value=0.016 Score=36.50 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH-----HCCCEECH
Q ss_conf 999878899967899999997-----18948957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK-----LNVPQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~-----~~~~~is~ 31 (201)
+++-||||+||+|.|+.|+.. |-|+-+|.
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028 165 MILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 5886699876588999998605777427999741
No 312
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.22 E-value=0.05 Score=33.46 Aligned_cols=47 Identities=32% Similarity=0.550 Sum_probs=35.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHHHHHHH-HHHHHHH
Q ss_conf 9998788999678999999971---89-4895789999999600-1456666
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRAEVDRN-TLLGKQV 49 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~~~~~~-s~~g~~i 49 (201)
|+|+|.-|+||||-..+||..| |. +.+..||=+|.+.-.+ ..+|++.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~ 193 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL 193 (340)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 9999348886371799999999978986999823347899999999999995
No 313
>PRK06921 hypothetical protein; Provisional
Probab=95.21 E-value=0.062 Score=32.85 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=26.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH----HCC--CEECHHHHHHH
Q ss_conf 999878899967899999997----189--48957899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK----LNV--PQLSTGDMLRA 37 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~----~~~--~~is~gdllR~ 37 (201)
++|+|+||+|||-.|.-+|.. .|. .+++..+++.+
T Consensus 119 l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~ 159 (265)
T PRK06921 119 IALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 159 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 79972898988999999999999962971999887999999
No 314
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=95.21 E-value=0.021 Score=35.82 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHH
Q ss_conf 99987889996789999999718--94895789
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGD 33 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gd 33 (201)
|+|+|+..|||+..|..++..++ ..||.++.
T Consensus 1 iLVtGG~rSGKS~~AE~la~~~~~~~~YiAT~~ 33 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLALASGGPVVYIATAQ 33 (166)
T ss_pred CEEECCCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 988688773389999999985599819997698
No 315
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=95.20 E-value=0.037 Score=34.23 Aligned_cols=80 Identities=26% Similarity=0.267 Sum_probs=48.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH--HC-C---CEECHHHHHHHHHH-HHHHHHHHHHH-HHH-C--CCCC--CCHHHHHHHH
Q ss_conf 999878899967899999997--18-9---48957899999996-00145666677-641-3--4455--4103566555
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK--LN-V---PQLSTGDMLRAEVD-RNTLLGKQVKG-SME-S--GSLI--SDAIVNQVVC 69 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~--~~-~---~~is~gdllR~~~~-~~s~~g~~i~~-~l~-~--G~lv--pd~ii~~li~ 69 (201)
|+++|==||||||-|.+||.+ +. . |-+..-|+.|-+.- .=--+|+++-= ++. . |+-+ |-+++-+-+.
T Consensus 105 ilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~ 184 (439)
T TIGR00959 105 ILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALE 184 (439)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99731378857889999999999986389703403210347899999997675288711004788898877899999999
Q ss_pred HHHCCCCCCCEEEEC
Q ss_conf 420232225317863
Q gi|254780240|r 70 DRIRLPDCDSGFILD 84 (201)
Q Consensus 70 ~~l~~~~~~~g~ilD 84 (201)
.+ +....+-+|+|
T Consensus 185 ~A--k~~~~D~vI~D 197 (439)
T TIGR00959 185 EA--KENGFDVVIVD 197 (439)
T ss_pred HH--HHCCCCEEEEE
T ss_conf 99--97489789972
No 316
>PRK09087 hypothetical protein; Validated
Probab=95.18 E-value=0.03 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
+++.||+|||||..+...+++.+-..+....+
T Consensus 47 ~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~~~ 78 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKADALLVHPNEI 78 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHC
T ss_conf 89989999988699999999809968366874
No 317
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.018 Score=36.18 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+||.||||+|..+.|+--|.
T Consensus 31 ~vaivG~sGsGKSTLl~ll~gl~~ 54 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999966866
No 318
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.18 E-value=0.02 Score=35.88 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
++-|+||.||||+|.+++|...|
T Consensus 378 ~vaIVG~SGsGKSTl~~LL~g~~ 400 (588)
T PRK11174 378 RVALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999864999999998728
No 319
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.017 Score=36.44 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 699987889996789999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~ 22 (201)
.+.++|++||||||+.+.|+-
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999988999889999999537
No 320
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=95.17 E-value=0.03 Score=34.81 Aligned_cols=118 Identities=15% Similarity=0.226 Sum_probs=66.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHH---------------------HHHHHHHHHCCCCCCCH
Q ss_conf 998788999678999999971894895789999999600145---------------------66667764134455410
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLL---------------------GKQVKGSMESGSLISDA 62 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~---------------------g~~i~~~l~~G~lvpd~ 62 (201)
.|||..|+||||.---||++...=.|.-||.|=.-...++.+ +.+-..+|-+-+-||.+
T Consensus 857 ALMG~SGAGKTTLLn~La~R~t~GvIT~G~~lVNG~~lD~sF~R~iGYvQQQD~Hl~~~TVREaL~FSA~LRqP~~vs~~ 936 (1466)
T TIGR00956 857 ALMGASGAGKTTLLNVLAERVTTGVITDGDRLVNGRPLDSSFQRSIGYVQQQDLHLETSTVREALRFSAYLRQPKSVSKS 936 (1466)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCEEECCEEEECCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 51578876357888644330432177057155088455755574413245422122420288999999984598567865
Q ss_pred H----HHHHHHHHHCCCCCCCEEE-ECCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3----5665554202322253178-6380-1112457888766653125222103555422125664
Q gi|254780240|r 63 I----VNQVVCDRIRLPDCDSGFI-LDGY-PRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKR 123 (201)
Q Consensus 63 i----i~~li~~~l~~~~~~~g~i-lDGF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R 123 (201)
. |-++| +-|+..+....+| +-|- ==|+||-+.|--. -+.-.+|++.++||=|=.=+-.+
T Consensus 937 EK~~YVe~vI-~lLEMe~YaDAvVG~pG~tGLNVEQRKRLTIG-VELvAkPkLL~FLDEPTSGLDSQ 1001 (1466)
T TIGR00956 937 EKMEYVEEVI-KLLEMESYADAVVGVPGETGLNVEQRKRLTIG-VELVAKPKLLLFLDEPTSGLDSQ 1001 (1466)
T ss_pred HHHHHHHHHH-HHHCCHHHCCEEEECCCCCCCCHHHHHHHHHH-HHHHHCCCHHEECCCCCCCHHHH
T ss_conf 3246888887-66410102211351567788873232101033-43221632000215889705589
No 321
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.16 E-value=0.023 Score=35.50 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH------------CCCEECHHHHH
Q ss_conf 69998788999678999999971------------89489578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL------------NVPQLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~------------~~~~is~gdll 35 (201)
|.+++|.||.|||.++.-||.+. .+..+++|.|+
T Consensus 196 NpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~Lv 241 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHH
T ss_conf 9721279998799999999999866999978851851275288775
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.16 E-value=0.015 Score=36.70 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|.|+||.||||+|..+.|+--|
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999981999999995787
No 323
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.02 Score=35.95 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||+|.++.|+--+
T Consensus 38 vaiiG~sGsGKSTLl~ll~Gl~ 59 (269)
T PRK13648 38 TSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999997999999996497
No 324
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.13 E-value=0.015 Score=36.76 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=24.9
Q ss_pred EEEECCCCCCHHHHHHHHH----HHHCCCEECHHHHH
Q ss_conf 9998788999678999999----97189489578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS----QKLNVPQLSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la----~~~~~~~is~gdll 35 (201)
+-|+||.||||+|.++.|. ...|-+.+.--|+=
T Consensus 359 laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~ 395 (556)
T TIGR01842 359 LAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLK 395 (556)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 8887478652588987887210135653364033440
No 325
>pfam01712 dNK Deoxynucleoside kinase. This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.
Probab=95.13 E-value=0.045 Score=33.71 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 653125222103555422125664233112323334556567898999999999-9997569999999679799993899
Q gi|254780240|r 100 ISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIEN-YRKTILPLSSYYRDMGCLYIIDGML 178 (201)
Q Consensus 100 l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~-y~~~~~pv~~~y~~~~~l~~Idg~~ 178 (201)
......+||++|+|+++.+++.+|+.+|..+...+ -+..-.++|.. |++.. ...|. ...+..||++.
T Consensus 61 ~~~~~~~pDliIYL~~~~e~~~~RI~kRgR~~E~~--------I~~~YL~~L~~~~y~~~---~~~~~-~~pvl~Id~~~ 128 (146)
T pfam01712 61 LRQLPKRPDLIIYLKVSPETCLERIKKRGRTEEKN--------IELDYLELLHSEKYEKW---YTKYN-ASPVLVIDGDK 128 (146)
T ss_pred HHHCCCCCCEEEEEECCHHHHHHHHHHHCCHHHCC--------CCHHHHHHHHHHHHHHH---HHHCC-CCCEEEEECCC
T ss_conf 86168999879998388899999999829575428--------99999999989999999---98589-99889888976
Q ss_pred -CHHHHHHHHHHHHH
Q ss_conf -88999999999999
Q gi|254780240|r 179 -DMDEVSRSIDSLLV 192 (201)
Q Consensus 179 -~~~eV~~~I~~~l~ 192 (201)
+..+--++...++.
T Consensus 129 ~Dfv~n~~d~~~~~~ 143 (146)
T pfam01712 129 LDFVEDEEDIMNKRN 143 (146)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 787699999999999
No 326
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.10 E-value=0.019 Score=36.10 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
+.++||.||||||.-+.||
T Consensus 34 ~tlLGPSGcGKTTlLR~IA 52 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998998888899999996
No 327
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=95.09 E-value=0.017 Score=36.40 Aligned_cols=19 Identities=42% Similarity=0.725 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
+-++||.||||+|.-+.||
T Consensus 29 vaLLGPSGSGKsTLLR~iA 47 (241)
T TIGR00968 29 VALLGPSGSGKSTLLRVIA 47 (241)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9854689873789999983
No 328
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.09 E-value=0.019 Score=36.03 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 36 vaivG~nGsGKSTL~k~l~Gl~ 57 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999965999999997288
No 329
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.08 E-value=0.019 Score=36.04 Aligned_cols=19 Identities=37% Similarity=0.761 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
++|+||.||||||.-+.||
T Consensus 32 ~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999888899999996
No 330
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.08 E-value=0.022 Score=35.71 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+||+++|++||||||.-.++...
T Consensus 15 ~Ki~ilG~~~sGKTsll~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 58999979999889999998569
No 331
>KOG0058 consensus
Probab=95.06 E-value=0.023 Score=35.55 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+.++||.||||+|++.+|..-|.-
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058 497 VALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999889998889999999973688
No 332
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.06 E-value=0.025 Score=35.37 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH------------CCCEECHHHHH
Q ss_conf 69998788999678999999971------------89489578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL------------NVPQLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~------------~~~~is~gdll 35 (201)
|.+++|.||.|||.++.-||.+. .+..+++|.|+
T Consensus 201 NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~ 246 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 246 (857)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHH
T ss_conf 9758789998899999999999983899978816902473388786
No 333
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=95.05 E-value=0.017 Score=36.41 Aligned_cols=18 Identities=44% Similarity=0.776 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999878899967899999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRL 20 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~l 20 (201)
.+|.|+||.||||...+|
T Consensus 245 ~li~GGPGTGKTTTv~~L 262 (753)
T TIGR01447 245 SLITGGPGTGKTTTVARL 262 (753)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 899879889778999999
No 334
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.04 E-value=0.02 Score=35.98 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
.+.|+||.||||||.++.|+--+
T Consensus 36 ~vaiiG~nGsGKSTL~~~l~Gll 58 (283)
T PRK13640 36 WTALIGHNGSGKSTISKLINGLL 58 (283)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999987999999996403
No 335
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.03 E-value=0.014 Score=36.98 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=22.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH
Q ss_conf 999878899967899999997189489578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdll 35 (201)
|-++|+.||||||.+.+|-.- .+.+.|++|
T Consensus 391 vALVGRSGSGKsTlv~LlPRF---y~p~~G~Il 420 (603)
T TIGR02203 391 VALVGRSGSGKSTLVNLLPRF---YEPDSGQIL 420 (603)
T ss_pred EEEECCCCCHHHHHHHHCCCC---CCCCCCCEE
T ss_conf 998706885389998552366---045888565
No 336
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.02 E-value=0.11 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.5
Q ss_pred EECCCCCCHHHHHHHHHHH
Q ss_conf 9878899967899999997
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~ 23 (201)
|.|+||||||+.|-.||-.
T Consensus 24 i~G~~GsGKTql~lqla~~ 42 (235)
T cd01123 24 IFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 9999998499999999999
No 337
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.02 E-value=0.026 Score=35.21 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+|.|+||.||||+|..+.|+--|..
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999998799999999987288
No 338
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.018 Score=36.16 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 31 ~~iiGpSGsGKSTll~~i~Gl~ 52 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999977999999997699
No 339
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.01 E-value=0.021 Score=35.79 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 969998788999678999999
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la 21 (201)
+||+++|+|||||||...++.
T Consensus 15 ~KililG~~~sGKTsll~~l~ 35 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred EEEEEECCCCCCHHHHHHHHC
T ss_conf 189999899978899999983
No 340
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.01 E-value=0.022 Score=35.69 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
.+.|+||.||||+|.++.|+--|.
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999966666
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=95.01 E-value=0.045 Score=33.71 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=29.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CC-CEECHHHHHHHHH
Q ss_conf 9998788999678999999971----89-4895789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL----NV-PQLSTGDMLRAEV 39 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~----~~-~~is~gdllR~~~ 39 (201)
|+++|.-||||||-|.+||..| +. +-+...|.+|.+.
T Consensus 103 Im~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA 144 (453)
T PRK10867 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 144 (453)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 999746888518589999999997389837985588770589
No 342
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.00 E-value=0.019 Score=36.07 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 34 ~~iiG~sGsGKSTLl~~i~Gl~ 55 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999986999999997289
No 343
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=94.99 E-value=0.024 Score=35.41 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 6999878899967899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRL 20 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~l 20 (201)
+|+|.||||.|||-=|++.
T Consensus 88 HVIiYGPPGVGKTAAARLV 106 (532)
T TIGR02902 88 HVIIYGPPGVGKTAAARLV 106 (532)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 3898788696178999999
No 344
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.98 E-value=0.025 Score=35.31 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---C--CCEECHH
Q ss_conf 9998788999678999999971---8--9489578
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---N--VPQLSTG 32 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~--~~~is~g 32 (201)
+.|.|+||+||+|.|-.+|... | ..|+++-
T Consensus 22 t~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE 56 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99989999849999999999986369869999665
No 345
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.98 E-value=0.016 Score=36.52 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=38.9
Q ss_pred EECCCCCCHHHHHHHHHHHHCCC---EECHHHHHHHHHHHHHHHHHHHHHH------HHCCCCCCCHHHHHHHH---HHH
Q ss_conf 98788999678999999971894---8957899999996001456666776------41344554103566555---420
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLNVP---QLSTGDMLRAEVDRNTLLGKQVKGS------MESGSLISDAIVNQVVC---DRI 72 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~~~---~is~gdllR~~~~~~s~~g~~i~~~------l~~G~lvpd~ii~~li~---~~l 72 (201)
|||.|||||||.-.++.+..+-. -+=.||+.-+ .-+.+++.+ ++-|+ ...+=.+|+. +++
T Consensus 39 fmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~------~DA~RlR~~G~~a~~~nTGk--~CHLdA~mv~G~~~~L 110 (225)
T TIGR00073 39 FMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTK------NDADRLRKYGVPAIQINTGK--ECHLDAHMVAGAIHAL 110 (225)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH------HHHHHHHHCCCEEEEECCCC--CCCCHHHHHHHHHHHH
T ss_conf 025886115899999999845789789997553225------56999986498688636886--4440166786587554
Q ss_pred CCCC
Q ss_conf 2322
Q gi|254780240|r 73 RLPD 76 (201)
Q Consensus 73 ~~~~ 76 (201)
+..+
T Consensus 111 ~~~~ 114 (225)
T TIGR00073 111 KDLP 114 (225)
T ss_pred HCCC
T ss_conf 2168
No 346
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=94.97 E-value=0.023 Score=35.58 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+|-|+||.|+||+|+-++|-.-|.=
T Consensus 368 tvAlVGPSGAGKSTlf~LLLRFYDP 392 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 5887668876279999999860488
No 347
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.97 E-value=0.025 Score=35.32 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=40.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC----EE---CHHH----HHHHHHH---HHH-HHHHHHHHHHHCCCC-CCCHHHH
Q ss_conf 69998788999678999999971894----89---5789----9999996---001-456666776413445-5410356
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP----QL---STGD----MLRAEVD---RNT-LLGKQVKGSMESGSL-ISDAIVN 65 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~----~i---s~gd----llR~~~~---~~s-~~g~~i~~~l~~G~l-vpd~ii~ 65 (201)
++.++||.||||+|.+++|..-|... .+ ...+ -+|..+. .++ -+..-+++-+.=|.. .+|+.+.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~i~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~ 436 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIE 436 (567)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 78885588885789999998615888836989999777538567887823546642777766999974578899999999
Q ss_pred HHHHHH
Q ss_conf 655542
Q gi|254780240|r 66 QVVCDR 71 (201)
Q Consensus 66 ~li~~~ 71 (201)
+.++..
T Consensus 437 ~a~k~a 442 (567)
T COG1132 437 EALKLA 442 (567)
T ss_pred HHHHHH
T ss_conf 999994
No 348
>KOG0735 consensus
Probab=94.97 E-value=0.025 Score=35.31 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 69998788999678999999971894
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVP 27 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~ 27 (201)
+|++-||+||||++.++.|+..|--.
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~ 458 (952)
T KOG0735 433 NILLNGPKGSGKTNLVKALFDYYSKD 458 (952)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 18986799877769999999875156
No 349
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.95 E-value=0.022 Score=35.69 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+++++||||.+|+.+|++++..+
T Consensus 41 hvlllGPPGtAKS~larrl~~~~ 63 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred CEEEECCCCHHHHHHHHHHHHHH
T ss_conf 46988899513889999999985
No 350
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.02 Score=35.98 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 28 ~~iiGpSGsGKSTLlr~i~Gl 48 (235)
T cd03299 28 FVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999963599999999749
No 351
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.95 E-value=0.021 Score=35.80 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||+||||||..+.|+-.+
T Consensus 36 ~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 36 MAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899960999999996789
No 352
>KOG0055 consensus
Probab=94.95 E-value=0.061 Score=32.88 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+.++||.||||+|.-++|+.-|.-
T Consensus 382 valVG~SGsGKST~i~LL~RfydP 405 (1228)
T KOG0055 382 VALVGPSGSGKSTLIQLLARFYDP 405 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999889998799999999972688
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=94.94 E-value=0.038 Score=34.20 Aligned_cols=80 Identities=24% Similarity=0.347 Sum_probs=46.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHHHHHHH-HHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9998788999678999999971---89-4895789999999600-14566667764---134455410356655542023
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRAEVDRN-TLLGKQVKGSM---ESGSLISDAIVNQVVCDRIRL 74 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~~~~~~-s~~g~~i~~~l---~~G~lvpd~ii~~li~~~l~~ 74 (201)
|+|+|--|+||||--.+||.+| |. +-|+.||=||++.-++ ..+|+++-=-+ +.|+-=|-.++..-|..+..+
T Consensus 85 il~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~Ak~~ 164 (284)
T TIGR00064 85 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQAAKAR 164 (284)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99984408860102889999998749908998275247999999999898838755407889887178999989999874
Q ss_pred CCCCCEEEEC
Q ss_conf 2225317863
Q gi|254780240|r 75 PDCDSGFILD 84 (201)
Q Consensus 75 ~~~~~g~ilD 84 (201)
.-+-+++|
T Consensus 165 --niDvvliD 172 (284)
T TIGR00064 165 --NIDVVLID 172 (284)
T ss_pred --CCCEEEEE
T ss_conf --99789973
No 354
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.025 Score=35.32 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
++++.||||+|||+..+.+++++
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 07998899987328999999999
No 355
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=94.91 E-value=0.02 Score=35.91 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=35.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE-----E-----------CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987889996789999999718948-----9-----------57899999996001456666776
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLNVPQ-----L-----------STGDMLRAEVDRNTLLGKQVKGS 52 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~~~~-----i-----------s~gdllR~~~~~~s~~g~~i~~~ 52 (201)
+|+|+-||||+|+++-|=++++=++ + |.+++|+. ..+++.|+.+.+|
T Consensus 153 LiCG~TGSGKSTl~AaiY~~~l~t~pdRKivT~EDPvEY~L~~~~~~l~a--p~Q~~IGRDv~sF 215 (374)
T TIGR02525 153 LICGETGSGKSTLAAAIYRHCLETYPDRKIVTYEDPVEYILGSPDDLLPA--PAQSEIGRDVESF 215 (374)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCCCCHHCC--CCCHHCCCCHHHH
T ss_conf 22177897289999999998507488970798657721231885201027--6301106876788
No 356
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.91 E-value=0.021 Score=35.76 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||+|....++-
T Consensus 30 v~i~GpSGsGKSTLl~~i~g 49 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99997999539999999962
No 357
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.019 Score=36.05 Aligned_cols=34 Identities=32% Similarity=0.666 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE--ECHHHHHH
Q ss_conf 99987889996789999999718948--95789999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ--LSTGDMLR 36 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~--is~gdllR 36 (201)
+++.||||+||+..|+.+|-.-+.|. +|-.|.+.
T Consensus 186 vlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 186 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred EEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHH
T ss_conf 268559998727899998454689835303444644
No 358
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.02 Score=35.93 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 53 ~~ivG~SGsGKSTLLr~i~GL 73 (269)
T cd03294 53 FVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999989984899999999759
No 359
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.86 E-value=0.022 Score=35.65 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||+|.-+.|+-
T Consensus 29 ~~ivGpSGsGKSTLL~~i~g 48 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999998449999999981
No 360
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.86 E-value=0.088 Score=31.90 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHH
Q ss_conf 6999878899967899999997-----18948957899999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRA 37 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~ 37 (201)
+++|.|+||.|||-.|.-+|.. +.+.++++-+++..
T Consensus 185 nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~ 225 (330)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIEN 225 (330)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 66988999998899999999999987994999629999999
No 361
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.021 Score=35.76 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+|.|+|+.||||+|..+.|..-|.
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~ 53 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998999829999999966766
No 362
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.81 E-value=0.025 Score=35.34 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+.|+||.||||+|..+.|+--+.
T Consensus 29 ~~iiG~SGsGKSTll~~i~gL~~ 51 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLND 51 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999819999999974450
No 363
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.80 E-value=0.023 Score=35.54 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||..+.|+-
T Consensus 53 ~~lvGpSGsGKSTLLr~i~G 72 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNG 72 (382)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999997349999999975
No 364
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.80 E-value=0.023 Score=35.59 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC------------CEECHHHHHHHHH----HHHHHHHHHHHHHHHCCCCC-CCHHH
Q ss_conf 6999878899967899999997189------------4895789999999----60014566667764134455-41035
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV------------PQLSTGDMLRAEV----DRNTLLGKQVKGSMESGSLI-SDAIV 64 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~------------~~is~gdllR~~~----~~~s~~g~~i~~~l~~G~lv-pd~ii 64 (201)
+|.|+|+.||||+|.++.|.--|.- .+++.- -+|.-+ ++..-+..-+++.+.-|... +++.+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~-~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i 579 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA-SLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEI 579 (709)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHH-HHHHHEEEECCCCHHHCCCHHHHHHCCCCCCCHHHH
T ss_conf 8999879999889999998367888885599998727866999-998654687466532047398797468999997999
Q ss_pred HHH
Q ss_conf 665
Q gi|254780240|r 65 NQV 67 (201)
Q Consensus 65 ~~l 67 (201)
.+.
T Consensus 580 ~~A 582 (709)
T COG2274 580 IEA 582 (709)
T ss_pred HHH
T ss_conf 999
No 365
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=94.80 E-value=0.013 Score=37.08 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=22.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEECHHHHH
Q ss_conf 9878899967899999997189489578999
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~~~~~is~gdll 35 (201)
++||.||||||.=..|| ||...|.|.++
T Consensus 1 LLGpSGcGKTTlLrlLA---Gf~~pd~G~i~ 28 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLA---GFEQPDSGSIM 28 (331)
T ss_pred CCCCCCCCHHHHHHHHH---CCCCCCCCEEE
T ss_conf 97888874799999983---45877755077
No 366
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.80 E-value=0.021 Score=35.77 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+|+.||||+|..+.|..-|.
T Consensus 30 ~vaivG~sGsGKSTll~ll~gl~~ 53 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999859999999967765
No 367
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.80 E-value=0.027 Score=35.07 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+|.|+|+.||||+|.++.|..-|..
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~p 73 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDI 73 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999998199999999605667
No 368
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.74 E-value=0.028 Score=35.04 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||.++.|+--
T Consensus 40 v~iiG~nGsGKSTL~r~l~gl 60 (281)
T PRK13633 40 LVILGHNGSGKSTIAKHMNAL 60 (281)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999998499999999758
No 369
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.025 Score=35.35 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||+|..+.|+--
T Consensus 27 ~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999995599999999769
No 370
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.72 E-value=0.03 Score=34.83 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
|+|.||-||||||--+-+-.+.|
T Consensus 130 iLVTGPTGSGKSTTlAsmIDyIN 152 (350)
T TIGR01420 130 ILVTGPTGSGKSTTLASMIDYIN 152 (350)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89876889867899999997874
No 371
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=94.72 E-value=0.02 Score=35.88 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHH-HHHHHH
Q ss_conf 9998788999678999-999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQAC-RLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~-~la~~~ 24 (201)
+++.||||||||||-- .|.+..
T Consensus 23 ~vl~a~tGsGKtTqvP~~ll~~~ 45 (812)
T PRK11664 23 VLLKAPTGAGKSTWLPLQLLQQG 45 (812)
T ss_pred EEEEECCCCCHHHHHHHHHHHCC
T ss_conf 99990899998999999999646
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.71 E-value=0.032 Score=34.67 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=28.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC--CEECHHHH
Q ss_conf 96999878899967899999997189--48957899
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLNV--PQLSTGDM 34 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~~--~~is~gdl 34 (201)
|-++|+|+..|||+..|..|+..++- .||.++..
T Consensus 2 mi~LVtGG~rSGKS~~AE~la~~~~~~~~YiAT~~~ 37 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 899997987634899999999856998299975888
No 373
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.025 Score=35.36 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 57 ~~ivG~SGsGKSTLlr~i~gL 77 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999984699999999759
No 374
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.027 Score=35.16 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 29 ~~iiG~SGsGKSTll~~i~gL 49 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999997299999999759
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.03 Score=34.80 Aligned_cols=23 Identities=48% Similarity=0.871 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++|.||||+||+|.|..||+.+.
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 00379999978999999999965
No 376
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.70 E-value=0.02 Score=35.94 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+|.|+||.||||+|.++.|+--|.-
T Consensus 493 ~vaIvG~sGsGKSTL~kll~Gl~~p 517 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 8999805898788999985567589
No 377
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.025 Score=35.30 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||+|..+.|+--+
T Consensus 30 ~~ilGpSG~GKSTllr~i~gl~ 51 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999956999999997599
No 378
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.69 E-value=0.024 Score=35.42 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|.|+||.||||+|..+.|.--|
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999985999999996725
No 379
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.028 Score=34.99 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
.+.|+||.||||||.++.|+--+
T Consensus 38 ~vaivG~nGsGKSTLlk~l~Gll 60 (273)
T PRK13632 38 YVAILGHNGSGKSTISKILTGLL 60 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999986999999997387
No 380
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.69 E-value=0.026 Score=35.18 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||+||||+|..+.|+-
T Consensus 38 ~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99998999519999999857
No 381
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.68 E-value=0.028 Score=35.02 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
.+.|+||.||||||.++.|+--+
T Consensus 32 ~vaivG~nGsGKSTL~~~l~Gll 54 (276)
T PRK13650 32 WLSIIGHNGSGKSTTVRLIDGLL 54 (276)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999987999999997388
No 382
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.68 E-value=0.028 Score=35.06 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 29 ~~i~GpSG~GKSTlLr~iaGl~ 50 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999880999999997699
No 383
>KOG0741 consensus
Probab=94.67 E-value=0.03 Score=34.80 Aligned_cols=33 Identities=36% Similarity=0.734 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE---ECHHHHH
Q ss_conf 99987889996789999999718948---9578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ---LSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~---is~gdll 35 (201)
+++-|||||||++.|..+|..-+||. +|.-|++
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi 576 (744)
T KOG0741 541 VLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI 576 (744)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHC
T ss_conf 998669988768899999752799847973778703
No 384
>KOG0729 consensus
Probab=94.66 E-value=0.074 Score=32.38 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH--HHHHHHHHHHH
Q ss_conf 99987889996789999999718948957--89999999600
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST--GDMLRAEVDRN 42 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~--gdllR~~~~~~ 42 (201)
|++.||||+||+-.|+.+|.+.+-+.|-+ ++|+.+.+-.+
T Consensus 214 vllyGPPGtGKTL~ARAVANRTdAcFIRViGSELVQKYvGEG 255 (435)
T KOG0729 214 VLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 378689998610899987456674587631189999986246
No 385
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.66 E-value=0.025 Score=35.34 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||.++.|+--
T Consensus 36 v~iiG~nGsGKSTLl~~l~GL 56 (287)
T PRK13637 36 VALIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999993999999999739
No 386
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.66 E-value=0.023 Score=35.54 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||.++.|+--
T Consensus 23 vaiiG~sGsGKSTLl~~l~GL 43 (276)
T PRK13634 23 VAIIGHTGSGKSTLLQHLNGL 43 (276)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999996999999999749
No 387
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.64 E-value=0.033 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+||.||||+|..+.|+--|.
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999989999999967971
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.029 Score=34.89 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.++||+||||+|..+.|+-
T Consensus 36 ~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999999837
No 389
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.63 E-value=0.028 Score=35.03 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
++.|+|+|||||||-...+|..+.-
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~ 248 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQ 248 (824)
T ss_pred HEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 3334468887626799999999741
No 390
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.61 E-value=0.034 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||+|..+.|+--+
T Consensus 36 ~~i~G~sGsGKSTLlk~i~gl~ 57 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996466
No 391
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.046 Score=33.66 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 6999878899967899999997189489
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
||+.+||.|.||+.+|++||+-.|.|.+
T Consensus 52 NILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 52 NILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 3588888887688999999998489837
No 392
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.61 E-value=0.031 Score=34.72 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
.+|.||+|+||+|.|..+|+.++-
T Consensus 41 yLFsGprG~GKTt~ArilAk~LnC 64 (560)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (560)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 663289987899999999999659
No 393
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.61 E-value=0.031 Score=34.78 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9699987889996789999999718
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
.+|+|.|+.||||||....|.....
T Consensus 163 ~NIlIsGgTGSGKTTllnALl~~IP 187 (343)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (343)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 8899988898619999999996289
No 394
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=94.60 E-value=0.032 Score=34.65 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+||+++|+|||||||...++...
T Consensus 15 ~Ki~llG~~~vGKTsll~~~~~~ 37 (174)
T pfam00025 15 MRILILGLDNAGKTTILYKLKLG 37 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69999999999889999999549
No 395
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.028 Score=35.04 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
+.|+||.||||||..+.|+ |+...+.|.+
T Consensus 26 ~~iiGpSGsGKSTll~~i~---GL~~p~sG~I 54 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIA---GLEKPDGGTI 54 (214)
T ss_pred EEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9999999735999999998---4999996499
No 396
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.59 E-value=0.038 Score=34.18 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99987889996789999999718
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
+.|+||.||||+|..+.|+-.+|
T Consensus 25 taIvGpsGsGKSTLl~~i~~~lg 47 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89999999988999999998747
No 397
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.03 Score=34.84 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
.+.|+|+.||||||.++.|+--+
T Consensus 35 ~~aiiG~sGsGKSTL~~~l~Gl~ 57 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999968999999996389
No 398
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=94.55 E-value=0.031 Score=34.74 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
|+++|+.||||+|.-++|...
T Consensus 32 ~fL~GHSGaGKST~lkLi~~~ 52 (216)
T TIGR00960 32 VFLVGHSGAGKSTLLKLILGI 52 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998568886078999999852
No 399
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.54 E-value=0.08 Score=32.16 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-------CCCEECHHHHHHHHHH
Q ss_conf 9998788999678999999971-------8948957899999996
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL-------NVPQLSTGDMLRAEVD 40 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~-------~~~~is~gdllR~~~~ 40 (201)
++|.||+|||||...+-++.+. .+.|++..++....+.
T Consensus 37 l~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~ 81 (219)
T pfam00308 37 LFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVD 81 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
T ss_conf 699889999888999999999998499982888439999998899
No 400
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.039 Score=34.15 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=46.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHH-----HHHHHHHH
Q ss_conf 99987889996789999999718948----957899999996001456666776413-445541035-----66555420
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDMLRAEVDRNTLLGKQVKGSMES-GSLISDAIV-----NQVVCDRI 72 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdllR~~~~~~s~~g~~i~~~l~~-G~lvpd~ii-----~~li~~~l 72 (201)
|.++||-|+||+|-.++||.+|.... +=+-|-.|=.. -.+++.|-+- | +|-.++ ..-....+
T Consensus 244 IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGA------VEQLKTYAeIMg--VPV~VV~dp~eL~~AL~~l 315 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT------VQQLQDYVKTIG--FEVIAVRDEAAMTRALTYF 315 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH------HHHHHHHHHHHC--CCEEEECCHHHHHHHHHHH
T ss_conf 99989999888999999999986169808999806634769------999999999849--9439968889999999987
Q ss_pred CC-CCCCCEEEEC--CC-HHHHHHHHHHHHHHHHH
Q ss_conf 23-2225317863--80-11124578887666531
Q gi|254780240|r 73 RL-PDCDSGFILD--GY-PRTVDQAKSLHAFISNM 103 (201)
Q Consensus 73 ~~-~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~ 103 (201)
+. .+| +-++|| |- ||+..|...|..++...
T Consensus 316 kdka~~-DLILIDTAGRS~RD~~~I~EL~~~l~~~ 349 (436)
T PRK11889 316 KEEARV-DYILIDTAGKNYRASETVEEMIETMGQV 349 (436)
T ss_pred HHCCCC-CEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 633688-8899929898846899999999998512
No 401
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.54 E-value=0.039 Score=34.12 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+||.||||+|..+.|..-+.
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999979999999960357
No 402
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.03 Score=34.83 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--.
T Consensus 30 ~~iiGpsGsGKSTLl~~i~gl~ 51 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999833999999997499
No 403
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.52 E-value=0.041 Score=33.98 Aligned_cols=24 Identities=46% Similarity=0.685 Sum_probs=21.3
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHH
Q ss_conf 9699-98788999678999999971
Q gi|254780240|r 1 MRII-FLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 1 m~I~-i~G~PGsGK~T~a~~la~~~ 24 (201)
|||+ |+|..+|||||...+|.+.+
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9299999679999999999999999
No 404
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.52 E-value=0.036 Score=34.30 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=14.9
Q ss_pred EECCCCCCHHHHHHHHHHHH-----CCCEECHHHH
Q ss_conf 98788999678999999971-----8948957899
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKL-----NVPQLSTGDM 34 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~-----~~~~is~gdl 34 (201)
|+||.|+|||-.|+.||+.+ .+..|.|++.
T Consensus 544 f~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy 578 (823)
T CHL00095 544 FCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEY 578 (823)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 87899887799999999997478202588535101
No 405
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.032 Score=34.69 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHH
Q ss_conf 9998788999678999999971894895789
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGD 33 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gd 33 (201)
+.|+||.||||+|..+.|+ |+...+.|+
T Consensus 29 ~~ivGpSG~GKSTllr~i~---Gl~~p~~G~ 56 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIA---GLEEPDSGS 56 (178)
T ss_pred EEEECCCCCHHHHHHHHHH---CCCCCCCEE
T ss_conf 9999999983999999998---599999639
No 406
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.031 Score=34.71 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||..+.|+-
T Consensus 29 ~~iiGpSGsGKSTllr~i~G 48 (232)
T cd03300 29 FTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999999839999999977
No 407
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.50 E-value=0.032 Score=34.64 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
+.|+||.||||+|.-+.|+ |+..-+.|.+
T Consensus 27 ~~i~GpSGsGKSTLL~~i~---gl~~p~sG~i 55 (206)
T TIGR03608 27 VAIVGESGSGKSTLLNIIG---LLEKPDSGQV 55 (206)
T ss_pred EEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 9998799970999999997---5999897599
No 408
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=94.49 E-value=0.018 Score=36.26 Aligned_cols=15 Identities=53% Similarity=0.860 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999878899967899
Q gi|254780240|r 3 IIFLGPPGSGKGTQA 17 (201)
Q Consensus 3 I~i~G~PGsGK~T~a 17 (201)
|++.||-||||||-=
T Consensus 248 iLVTGPTGSGKtTTL 262 (495)
T TIGR02533 248 ILVTGPTGSGKTTTL 262 (495)
T ss_pred EEECCCCCCCHHHHH
T ss_conf 884177898525889
No 409
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.027 Score=35.15 Aligned_cols=29 Identities=28% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
+.++||.||||||..+.|| |+...+.|++
T Consensus 35 ~~llGpSG~GKTTlLr~ia---Gl~~p~~G~I 63 (351)
T PRK11432 35 VTLLGPSGCGKTTVLRLVA---GLEKPTSGQI 63 (351)
T ss_pred EEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 9999999649999999997---6999883699
No 410
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.46 E-value=0.035 Score=34.41 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
+.|+||.||||+|.-..|+
T Consensus 34 vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999998999999996
No 411
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.46 E-value=0.036 Score=34.34 Aligned_cols=24 Identities=42% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+||.||||+|..+.|+--|.
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 999999998759999999986176
No 412
>KOG0989 consensus
Probab=94.45 E-value=0.044 Score=33.76 Aligned_cols=29 Identities=41% Similarity=0.753 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEC
Q ss_conf 69998788999678999999971894895
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLS 30 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is 30 (201)
+-+|.||||.|||+-+..+|..+.-+++-
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~~~ 87 (346)
T KOG0989 59 HYLFYGPPGTGKTSTALAFARALNCEQLF 87 (346)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 07866899986768999999985574235
No 413
>KOG0727 consensus
Probab=94.45 E-value=0.036 Score=34.30 Aligned_cols=27 Identities=26% Similarity=0.585 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 999878899967899999997189489
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQL 29 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~i 29 (201)
+++.||||+||+..++.+|.+..-..|
T Consensus 192 vllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727 192 VLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCHHEE
T ss_conf 277579997578999998612611144
No 414
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=94.44 E-value=0.037 Score=34.23 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=24.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
|++-|.|||||+|..+.+.......+..+-.+
T Consensus 1 ~vV~gvpGsGKSt~I~~l~~~~~~~~~p~~~~ 32 (226)
T pfam01443 1 IVVHGVPGCGKSTLIRKLLRTDLTVIRPTAEL 32 (226)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 95940799988999999986478642322777
No 415
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.43 E-value=0.032 Score=34.61 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
++.|+||.||||+|..+.|+--
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~Gl 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999958999889999998698
No 416
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.037 Score=34.24 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 36 ~aiiG~nGsGKSTLl~~l~GLl 57 (286)
T PRK13646 36 YAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999981999999997078
No 417
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.43 E-value=0.031 Score=34.70 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 31 ~~llGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 31 VALLGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999984699999999769
No 418
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.42 E-value=0.07 Score=32.52 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHH
Q ss_conf 99987889996789999999718--948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdl 34 (201)
|+|+|+..|||+..|..++..++ ..||.++..
T Consensus 2 iLVtGG~rSGKS~~AE~la~~~~~~~~YiAT~~~ 35 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEA 35 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 8997786636899999999845998199978898
No 419
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.42 E-value=0.031 Score=34.72 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 33 ~~llGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999863699999999769
No 420
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.41 E-value=0.035 Score=34.41 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
+.|+||.||||||..+.|+
T Consensus 30 ~aliG~sGsGKSTLl~~l~ 48 (248)
T PRK11264 30 VAIIGPSGSGKTTLLRCIN 48 (248)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999980999999997
No 421
>KOG0991 consensus
Probab=94.39 E-value=0.036 Score=34.34 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+++|-||||.||+|-..-||..+
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991 50 NLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 66752799986164899999998
No 422
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=94.37 E-value=0.035 Score=34.38 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9699987889996789999999
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~ 22 (201)
+||+++|++||||||...++..
T Consensus 10 ~kililG~~~sGKTsil~~l~~ 31 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999998999999966
No 423
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.36 E-value=0.033 Score=34.56 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||.-+.||-
T Consensus 33 ~~llGpSG~GKtTlLr~iaG 52 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999995359999999976
No 424
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=94.36 E-value=0.027 Score=35.07 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=17.1
Q ss_pred EEECCCCCCHHHHHHHHHHHH
Q ss_conf 998788999678999999971
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~ 24 (201)
.|+||.||||||.-+-|-.-.
T Consensus 31 AlIGPSGCGKSTlLR~lNRMn 51 (248)
T TIGR00972 31 ALIGPSGCGKSTLLRSLNRMN 51 (248)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 987788986789999988776
No 425
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.36 E-value=0.036 Score=34.37 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||..+.|+-
T Consensus 38 v~iiG~sGsGKSTLl~~i~G 57 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999409999999966
No 426
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.36 E-value=0.035 Score=34.37 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6999878899967899999997189
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
.+.|+|+.||||+|+..+|..-|.-
T Consensus 413 t~AlVG~SGsGKSTii~LL~RfYdP 437 (1467)
T PTZ00265 413 TYAFVGESGCGKSTILKLIERLYDP 437 (1467)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 7998668887566799999632688
No 427
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.36 E-value=0.034 Score=34.50 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||..+.|+-
T Consensus 34 ~~llGpSG~GKTTlLr~iaG 53 (362)
T TIGR03258 34 LALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999997459999999977
No 428
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.04 Score=34.04 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 31 vaiiG~nGsGKSTL~~~l~Gll 52 (274)
T PRK13644 31 IGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999980999999997068
No 429
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.33 E-value=0.035 Score=34.45 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||.++.|+-
T Consensus 35 ~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 35 HAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEEECCCCCCHHHHHHHHCC
T ss_conf 99999999999999999727
No 430
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=94.31 E-value=0.038 Score=34.17 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9699987889996789999999
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~ 22 (201)
+||+++|.+||||||+..++..
T Consensus 14 ~kililG~~~~GKTsil~~l~~ 35 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 9999998899998999999965
No 431
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.29 E-value=0.038 Score=34.20 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
||+++|.|||||||...++...
T Consensus 1 Ki~ilG~~~vGKTsll~~l~~~ 22 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999539
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.041 Score=33.95 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+|+.||||+|..+.|+--+.
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999839999999976775
No 433
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.035 Score=34.40 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 33 ~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999957999999997599
No 434
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=94.28 E-value=0.044 Score=33.77 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=35.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH--CCCEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 969998788999678999999971--894895789999999600145666677641
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL--NVPQLSTGDMLRAEVDRNTLLGKQVKGSME 54 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~--~~~~is~gdllR~~~~~~s~~g~~i~~~l~ 54 (201)
|.|+++|+.-|||++.|..++..- .+.||.+|.-+ +.+...+|+..-+
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~------D~Em~~RI~~Hr~ 50 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQVLYVATGRAF------DDEMQERIAHHRA 50 (175)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCC------CHHHHHHHHHHHH
T ss_conf 9089856866774189999998518964999806778------8789999999985
No 435
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.27 E-value=0.036 Score=34.31 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 699987889996789999999718
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
++.|+|+.||||+|..+.|+-.+.
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~~ 52 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999809999999855565
No 436
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.27 E-value=0.038 Score=34.17 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
++|+||.||||+|.-+-|.
T Consensus 31 v~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999998889999997
No 437
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.26 E-value=0.049 Score=33.48 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|=|.||||+||+|.-..|..++
T Consensus 31 ~iGiTG~PGaGKStli~~l~~~~ 53 (267)
T pfam03308 31 RVGITGVPGAGKSTLIEALGMEL 53 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99876899887999999999999
No 438
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.036 Score=34.36 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 32 ~~llGpsG~GKSTllr~i~Gl 52 (369)
T PRK11000 32 VVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999973699999999779
No 439
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=94.25 E-value=0.2 Score=29.63 Aligned_cols=110 Identities=25% Similarity=0.365 Sum_probs=56.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCCEECHH--------HHHHHHHHHHHHHHHHHHHHHHC---CCCC---------
Q ss_conf 969998788999678999999971-89489578--------99999996001456666776413---4455---------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL-NVPQLSTG--------DMLRAEVDRNTLLGKQVKGSMES---GSLI--------- 59 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~-~~~~is~g--------dllR~~~~~~s~~g~~i~~~l~~---G~lv--------- 59 (201)
++..|.|.||.||+|+|.++++-+ .+-++--| ||+-..+--- +-+.++.+++ |-|-
T Consensus 59 lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trddlvGqy~Ght---aPktke~lk~a~GGvlfideayyly~ 135 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT---APKTKEVLKRAMGGVLFIDEAYYLYR 135 (284)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCC---CCHHHHHHHHHCCCEEEEECHHHHCC
T ss_conf 267751689872489999999999871540036267853001311221257---72268999874287366422033217
Q ss_pred CC------HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 41------035665554202322253178638011124578887666531252221035554221
Q gi|254780240|r 60 SD------AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDA 118 (201)
Q Consensus 60 pd------~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~ 118 (201)
|| ...++++.+.|+.....--+|+-||--.+. .|. -.++|..--..-+++.|+-
T Consensus 136 P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~---~f~--~snPG~~sr~a~h~~fPdy 195 (284)
T TIGR02880 136 PDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD---SFF--ESNPGLSSRVAHHVDFPDY 195 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH---HHH--HCCCCHHHHHHHHCCCCCC
T ss_conf 76410223799999999872365537888717078888---875--1178624677643158887
No 440
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=94.22 E-value=0.054 Score=33.24 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|.++|+.+|||+|.++.|+...
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~ 24 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYL 24 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79999489998999999999999
No 441
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.21 E-value=0.041 Score=33.96 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
|=|.||||+||+|.-..|...|
T Consensus 2 iGitG~pGaGKStLi~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 7625899787899999999999
No 442
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.041 Score=34.01 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 35 vaiiG~nGsGKSTLl~~l~Gll 56 (288)
T PRK13643 35 TALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999947999999997488
No 443
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.20 E-value=0.038 Score=34.21 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 30 ~~lvGpnGaGKSTLl~~i~Gl~ 51 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999846999999997599
No 444
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=94.20 E-value=0.047 Score=33.61 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 99987889996789999999718948
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ 28 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~ 28 (201)
|+++||||.||+-.|+.+|...+-..
T Consensus 243 ~ll~GPPGtGktllaka~ane~~a~f 268 (980)
T TIGR01243 243 VLLYGPPGTGKTLLAKAVANEAGAYF 268 (980)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 58755898617899999875305517
No 445
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=94.19 E-value=0.031 Score=34.73 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
++++|+||||++|.=+-+|.+
T Consensus 91 ~vVLGrPGaGCsTlLk~ia~~ 111 (1466)
T TIGR00956 91 TVVLGRPGAGCSTLLKTIASK 111 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 997248997356655565320
No 446
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.19 E-value=0.039 Score=34.15 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 46 ~~llGpSGsGKSTLlr~iaGl 66 (378)
T PRK09452 46 LTLLGPSGCGKTTVLRLIAGF 66 (378)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999989997699999999769
No 447
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.19 E-value=0.039 Score=34.14 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 33 ~~iiG~sGsGKTTll~~i~Gl~ 54 (218)
T cd03255 33 VAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999986999999996699
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.18 E-value=0.043 Score=33.84 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 29 ~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998899998999999995685
No 449
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.18 E-value=0.056 Score=33.14 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
|+|.|.|.=||||||++..|+..
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~ 23 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKR 23 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 96999659976589999999999
No 450
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.17 E-value=0.044 Score=33.77 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.++||.||||||..+.|+-
T Consensus 28 v~ilGpNGaGKSTllk~i~G 47 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999999999999968
No 451
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.13 E-value=0.25 Score=29.07 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CC--CEECH
Q ss_conf 9998788999678999999971----89--48957
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL----NV--PQLST 31 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~----~~--~~is~ 31 (201)
++|.|+||+||||.+..+|.++ |. .++|.
T Consensus 22 ~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~sl 56 (186)
T pfam03796 22 IIIAARPSMGKTAFALNIARNAALKQDKPVLFFSL 56 (186)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99996799987999999999999970996687547
No 452
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.045 Score=33.72 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 34 ~aiiG~NGsGKSTLl~~l~Gl~ 55 (273)
T PRK13647 34 TAILGPNGAGKSTLLLHLNGIY 55 (273)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999975999999996698
No 453
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.044 Score=33.78 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||+|..+.|+-..
T Consensus 36 ~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 36 VLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999899998899999983787
No 454
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.11 E-value=0.043 Score=33.87 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999878899967899999997
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+|.|+|+.||||||.++.|+-.
T Consensus 31 ~vgLVG~NGsGKSTLl~iL~G~ 52 (632)
T PRK11147 31 RVCLVGRNGAGKSTLMKILSGE 52 (632)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999998799999998389
No 455
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.11 E-value=0.058 Score=33.02 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH------------CCCEECHHHHH
Q ss_conf 69998788999678999999971------------89489578999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL------------NVPQLSTGDML 35 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~------------~~~~is~gdll 35 (201)
|.+++|.||.|||.++.-||++. .+..+++|.|+
T Consensus 210 NPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~Lv 255 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ 255 (852)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHH
T ss_conf 9746579998799999999999976999867743856786788886
No 456
>PRK10744 phosphate transporter subunit; Provisional
Probab=94.10 E-value=0.053 Score=33.28 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
+.|+||.||||+|..+.|+--|++
T Consensus 39 ~~liG~nGaGKSTLlk~i~gl~~l 62 (257)
T PRK10744 39 TAFIGPSGCGKSTLLRTFNKMYEL 62 (257)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999999998199999999876512
No 457
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.045 Score=33.70 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||||.++.|+-
T Consensus 36 v~IiG~nGsGKSTL~k~l~G 55 (304)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNA 55 (304)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99987999859999999966
No 458
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.07 E-value=0.045 Score=33.70 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 699987889996789999999718948957899
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
.+.|+||.||||+|..+.|+ |+...+.|.+
T Consensus 33 ~~~IvG~sGsGKSTLl~~i~---G~~~~~~G~I 62 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALL---GELEKLSGSV 62 (204)
T ss_pred EEEEECCCCCCHHHHHHHHC---CCCCCCCCCC
T ss_conf 99999999985899999981---8952568952
No 459
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.052 Score=33.34 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878899967899999997189
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV 26 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~ 26 (201)
++|.|+|||||+||-.+..=.-++
T Consensus 68 vii~getGsGKTTqlP~~lle~g~ 91 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLLEEGL 91 (845)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 998679988758788999996001
No 460
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.041 Score=33.99 Aligned_cols=20 Identities=45% Similarity=0.552 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998788999678999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la 21 (201)
+|.|+||.||||||..+.|+
T Consensus 340 riaIvG~NGsGKSTLlk~L~ 359 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLA 359 (638)
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 79997478713889999972
No 461
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.04 E-value=0.048 Score=33.54 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.++||-||||||..+.|+--+
T Consensus 30 ~~l~G~NGaGKSTLlkli~Gl~ 51 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998899987999999997785
No 462
>KOG0728 consensus
Probab=94.04 E-value=0.12 Score=31.06 Aligned_cols=43 Identities=19% Similarity=0.488 Sum_probs=35.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHHHHHHHHHHH
Q ss_conf 99987889996789999999718--94895789999999600145
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLRAEVDRNTLL 45 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~~~~~~s~~ 45 (201)
+++.||||.||+-.|..+|-+.. |..+|-.+|+.+.+-.+|-+
T Consensus 184 vlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrm 228 (404)
T KOG0728 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRM 228 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 488469997562999998754140799964499999985013899
No 463
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.046 Score=33.67 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=18.0
Q ss_pred EEE-EECCCCCCHHHHHHHHHHH
Q ss_conf 699-9878899967899999997
Q gi|254780240|r 2 RII-FLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 2 ~I~-i~G~PGsGK~T~a~~la~~ 23 (201)
+|. |+||+||||||.|-.++..
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~ 83 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVAN 83 (279)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 58998468876546689999888
No 464
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.02 E-value=0.041 Score=34.00 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 39 v~ivG~sGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999858999999996699
No 465
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.039 Score=34.13 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+||.||||+|..+.|+-
T Consensus 34 ~~ivG~SGsGKSTllr~i~g 53 (233)
T cd03258 34 FGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99988980589999999967
No 466
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.01 E-value=0.047 Score=33.63 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||.++.++--
T Consensus 40 ~aIiG~nGsGKSTL~~~l~Gl 60 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999995799999999659
No 467
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.00 E-value=0.048 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
.||+++|.+||||||...++...
T Consensus 16 ~KililG~~~sGKTsil~~l~~~ 38 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 99999989999889999999739
No 468
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=94.00 E-value=0.059 Score=32.97 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+||+++|.+|+|||+...++...
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~ 23 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 98999999996799999999839
No 469
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.99 E-value=0.052 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 969998788999678999999971
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
++|+|.|+.||||||....|+...
T Consensus 161 ~NilI~G~TgSGKTTll~aL~~~i 184 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 719998888988999999998358
No 470
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.042 Score=33.89 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|.|+||.||||||..+.|+-.+
T Consensus 29 ~vgLVG~NGsGKSTLlklL~G~~ 51 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC
T ss_conf 99998899988999999980899
No 471
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.055 Score=33.18 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECHHH-------HHHHHHH--HHH--HHHHHHHHHH--HCCCCCCCHHH
Q ss_conf 6999878899967899999997189----4895789-------9999996--001--4566667764--13445541035
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLNV----PQLSTGD-------MLRAEVD--RNT--LLGKQVKGSM--ESGSLISDAIV 64 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~~----~~is~gd-------llR~~~~--~~s--~~g~~i~~~l--~~G~lvpd~ii 64 (201)
||-|+|+.||||+|..+.|+..|.. .+++-++ -+|+.+. .++ -+..-+++.+ .+.. .+|+.+
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel 444 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEEL 444 (573)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-CCHHHH
T ss_conf 6888779998789999999723587887365788673318836689987541232177777899877305999-988999
Q ss_pred HHHHHH
Q ss_conf 665554
Q gi|254780240|r 65 NQVVCD 70 (201)
Q Consensus 65 ~~li~~ 70 (201)
...+++
T Consensus 445 ~~aL~q 450 (573)
T COG4987 445 WAALQQ 450 (573)
T ss_pred HHHHHH
T ss_conf 999998
No 472
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.97 E-value=0.058 Score=33.03 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+||+++|.+|+||++...++...
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 98999996996899999999709
No 473
>KOG0730 consensus
Probab=93.97 E-value=0.079 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCEECHHHHHHHH
Q ss_conf 699987889996789999999718--9489578999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKLN--VPQLSTGDMLRAE 38 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~~ 38 (201)
.+++.||||.||+-.+.-+|++++ +..++...+++..
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHC
T ss_conf 744438999981899999999737225740628999852
No 474
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.94 E-value=0.052 Score=33.36 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+-.+
T Consensus 28 ~~liGpNGaGKSTllk~i~Gl~ 49 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999986999999997687
No 475
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.94 E-value=0.05 Score=33.44 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 969998788999678999999
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la 21 (201)
+||+++|.+|+||||+..++.
T Consensus 4 ~kIvilG~~~~GKTsil~r~~ 24 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLK 24 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999998899999996
No 476
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.94 E-value=0.054 Score=33.21 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.++||.||||||..+.|+-.+
T Consensus 29 ~~l~G~NGsGKTTl~~~l~G~~ 50 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999899984999999984898
No 477
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=93.93 E-value=0.05 Score=33.44 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 699987889996789999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~ 22 (201)
+|+++|.+||||||+..++..
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~ 21 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKP 21 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999972
No 478
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.045 Score=33.72 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 33 ~aliG~NGaGKSTLl~~i~Gll 54 (277)
T PRK13652 33 IAVIGPNGAGKSTLFKHFNGIL 54 (277)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999947999999996699
No 479
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=93.92 E-value=0.06 Score=32.94 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 69998788999678999999971
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+|=|.||||+||+|.-..|...|
T Consensus 51 ~iGiTG~pG~GKStli~~l~~~~ 73 (325)
T PRK09435 51 RIGITGVPGVGKSTFIEALGMHL 73 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99742799986889999999999
No 480
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.05 Score=33.45 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||..+.|+--+
T Consensus 28 v~iiG~nGaGKSTLl~~i~Gll 49 (233)
T PRK10771 28 VAILGPSGAGKSTLLNLIAGFL 49 (233)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999981999999996599
No 481
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.052 Score=33.33 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
+.|+||.||||+|.-..+|
T Consensus 32 vsilGpSGcGKSTLLriiA 50 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999788999999996
No 482
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.051 Score=33.40 Aligned_cols=19 Identities=37% Similarity=0.768 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998788999678999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la 21 (201)
+.|+||.||||||..+.|+
T Consensus 31 ~~iiG~nGaGKSTLl~~l~ 49 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999971999999996
No 483
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=93.90 E-value=0.07 Score=32.53 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 969998788999678999999971
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+||+++|+.+|||+|..+.+---|
T Consensus 29 iKlLLLG~geSGKSTi~KQ~ril~ 52 (350)
T pfam00503 29 VKLLLLGAGESGKSTILKQMKIIH 52 (350)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 759887899875999999999973
No 484
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.052 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 55 vaIIG~nGsGKSTL~~~l~Gll 76 (320)
T PRK13631 55 YFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999499984999999997588
No 485
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.89 E-value=0.048 Score=33.57 Aligned_cols=21 Identities=43% Similarity=0.450 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+--
T Consensus 28 v~liGpNGaGKSTLlk~l~Gl 48 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999979997699999999778
No 486
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.89 E-value=0.052 Score=33.31 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||..+.|+-.
T Consensus 30 ~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 30 HAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999998377
No 487
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.049 Score=33.47 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||.++.|+--
T Consensus 31 vaiiG~nGsGKSTLl~~l~Gl 51 (275)
T PRK13639 31 IAILGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999996499999999739
No 488
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.042 Score=33.91 Aligned_cols=18 Identities=44% Similarity=0.516 Sum_probs=16.3
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 998788999678999999
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la 21 (201)
=|+|+.||||+|.++.|+
T Consensus 37 givGeSGsGKSTL~r~l~ 54 (252)
T COG1124 37 GIVGESGSGKSTLARLLA 54 (252)
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 998489898889999995
No 489
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.86 E-value=0.042 Score=33.93 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||.||||||.++.|+--+
T Consensus 36 ~~iiG~nGsGKSTLl~~l~Gll 57 (286)
T PRK13641 36 VALIGHTGSGKSTLMQHFNALL 57 (286)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999839999999996598
No 490
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.057 Score=33.10 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
++.+++|||++||+|.-+-||.-
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~ 160 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARL 160 (308)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 24699659988707799999998
No 491
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.86 E-value=0.055 Score=33.17 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 699987889996789999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la~ 22 (201)
+|.|+||.||||||.++.|+-
T Consensus 35 ~vgLvG~NGaGKSTLlriLaG 55 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999719999999847
No 492
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.048 Score=33.55 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99987889996789999999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQ 22 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~ 22 (201)
+.|+|+.||||+|.++.|+-
T Consensus 41 l~ivGeSGsGKSTL~r~i~g 60 (266)
T PRK10419 41 VALLGRSGCGKSTLARLLVG 60 (266)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999999779999999966
No 493
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.85 E-value=0.053 Score=33.30 Aligned_cols=29 Identities=31% Similarity=0.770 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
Q ss_conf 99987889996789999999718948957899
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~is~gdl 34 (201)
+.|+||.||||||..+.|+- +...+.|++
T Consensus 30 ~~liG~nGsGKSTll~~i~G---l~~~~~G~i 58 (240)
T PRK09493 30 VVIIGPSGSGKSTLLRCINK---LEEITSGDL 58 (240)
T ss_pred EEEECCCCCHHHHHHHHHHC---CCCCCCCEE
T ss_conf 99999999809999999963---899999748
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=93.82 E-value=0.077 Score=32.27 Aligned_cols=35 Identities=37% Similarity=0.638 Sum_probs=27.1
Q ss_pred EE-EECCCCCCHHHHHHHHHHHH---CC-CEECHHHHHHH
Q ss_conf 99-98788999678999999971---89-48957899999
Q gi|254780240|r 3 II-FLGPPGSGKGTQACRLSQKL---NV-PQLSTGDMLRA 37 (201)
Q Consensus 3 I~-i~G~PGsGK~T~a~~la~~~---~~-~~is~gdllR~ 37 (201)
|+ ++|-=||||||-|.+||=+| || +.+-+-|=+|+
T Consensus 123 ViMfVGLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFRA 162 (453)
T TIGR01425 123 VIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRA 162 (453)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 5888621488715668787777632664325651775423
No 495
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.79 E-value=0.055 Score=33.20 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998788999678999999
Q gi|254780240|r 2 RIIFLGPPGSGKGTQACRLS 21 (201)
Q Consensus 2 ~I~i~G~PGsGK~T~a~~la 21 (201)
||+++|.+||||||+..++.
T Consensus 1 KivilG~~~~GKTsil~r~~ 20 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLK 20 (160)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 99999999999999999995
No 496
>KOG1942 consensus
Probab=93.78 E-value=0.15 Score=30.44 Aligned_cols=39 Identities=31% Similarity=0.597 Sum_probs=28.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC----CCEECHHHHHHHHHHH
Q ss_conf 99987889996789999999718----9489578999999960
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN----VPQLSTGDMLRAEVDR 41 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~~~~~ 41 (201)
+++-||||+||+..|--+++.+| |+..+-.++.-.|++.
T Consensus 67 vLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK 109 (456)
T KOG1942 67 VLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK 109 (456)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9973699876568999999974799985666410555434557
No 497
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.056 Score=33.13 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878899967899999997
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~ 23 (201)
+.|+||.||||||.++.|+--
T Consensus 36 ~aiiG~nGsGKSTLl~~l~Gl 56 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999959998699999999669
No 498
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=93.77 E-value=0.068 Score=32.62 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
+||+++|.+|+|||+...++...
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 98999997995799999999639
No 499
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.062 Score=32.83 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=19.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9987889996789999999718
Q gi|254780240|r 4 IFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 4 ~i~G~PGsGK~T~a~~la~~~~ 25 (201)
.++||||+||+|..+.|..+|.
T Consensus 73 avvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 73 AVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9636998874689999999987
No 500
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.75 E-value=0.064 Score=32.75 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
+.|+||-||||||..+.|+--+
T Consensus 40 ~~l~GpNGaGKTTLlr~l~Gl~ 61 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987999999997697
Done!