HHsearch alignment for GI: 254780240 and conserved domain: pfam01202

>pfam01202 SKI Shikimate kinase.
Probab=98.75  E-value=3.5e-07  Score=65.73  Aligned_cols=152  Identities=16%  Similarity=0.223  Sum_probs=82.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCEEEEC---
Q ss_conf             8999678999999971894895789999999600145666677641-344554103566555420232225317863---
Q gi|254780240|r    9 PGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME-SGSLISDAIVNQVVCDRIRLPDCDSGFILD---   84 (201)
Q Consensus         9 PGsGK~T~a~~la~~~~~~~is~gdllR~~~~~~s~~g~~i~~~l~-~G~lvpd~ii~~li~~~l~~~~~~~g~ilD---   84 (201)
T Consensus         1 mGsGKstigk~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~l~~~~----~~VIstGG   70 (158)
T pfam01202         1 MGAGKTTIGRLLAKALGLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLESEVLKELLAEH----NAVIATGG   70 (158)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEECHHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCC----CEEEEECC
T ss_conf             989779999999999699978872999988------78899999998198999999999999997169----94998078


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             80111245788876665312522210355542212566423311232333455656789899999999999975699999
Q gi|254780240|r   85 GYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSY  164 (201)
Q Consensus        85 GFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~  164 (201)
T Consensus        71 G~v~~~~~~~~----L~~----~g~vi~L~~~~~~i~~Rl~~~~~RPll-----~~~~~~~~~~~---l~~-~R---~~~  130 (158)
T pfam01202        71 GAVLSEENRDL----LRE----NGIVVYLDADPEVLLERLKADKTRPLL-----QDKDPEEELLE---LLF-ER---CPL  130 (158)
T ss_pred             CCCCCHHHHHH----HHH----CCEEEEEECCHHHHHHHHCCCCCCCCC-----CCCCHHHHHHH---HHH-HH---HHH
T ss_conf             60258999999----995----792799849999999997179999989-----89987999999---999-99---999


Q ss_pred             HHHCCCEEEECCC-CCHHHHHHHHHHHH
Q ss_conf             9967979999389-98899999999999
Q gi|254780240|r  165 YRDMGCLYIIDGM-LDMDEVSRSIDSLL  191 (201)
Q Consensus       165 y~~~~~l~~Idg~-~~~~eV~~~I~~~l  191 (201)
T Consensus       131 Y~~~a-~~~i~~~~~~~~ei~~~Ii~~l  157 (158)
T pfam01202       131 YEEAA-DIVVDTDESSPEEVAEEILEAL  157 (158)
T ss_pred             HHHHC-CEEEECCCCCHHHHHHHHHHHH
T ss_conf             99869-9998799999999999999975