HHsearch alignment for GI: 254780240 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=96.72 E-value=0.0015 Score=43.01 Aligned_cols=39 Identities=28% Similarity=0.586 Sum_probs=30.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC----CCEECHHHHHHHHHHH
Q ss_conf 99987889996789999999718----9489578999999960
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN----VPQLSTGDMLRAEVDR 41 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~~~~~ 41 (201)
T Consensus 53 iLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kK 95 (395)
T pfam06068 53 VLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKK 95 (395)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCH
T ss_conf 9987799988899999999974879973450011121256548